Chy12G212410 (gene) Cucumber (hystrix) v1

Overview
NameChy12G212410
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
LocationchrH12: 9165497 .. 9165859 (+)
RNA-Seq ExpressionChy12G212410
SyntenyChy12G212410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGCTTTATTCGTCTTGGATCCTCACCATTGTTCTTATCATTGCAGGTTCTCTTCTACTTCTGAATTATGTATAATTATTGCCAGCATCCATATGTTGTACATTTTTTAAATGAAAAATACCATATTTATAGTGGCTAAGTATATTTCACATACATTGTGGTGCAGTTGCAATGATTTCGGTACCTCAAGAAGCCTTAGCCGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGATGCCTCCCGTCAGTGCATACCAACTGATCCTGGCCAAACTATCTACGCTTGTTATTGTTTCTATAATTGTGGTTAA

mRNA sequence

ATGACAAAGCTTTATTCGTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCGGTACCTCAAGAAGCCTTAGCCGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGATGCCTCCCGTCAGTGCATACCAACTGATCCTGGCCAAACTATCTACGCTTGTTATTGTTTCTATAATTGTGGTTAA

Coding sequence (CDS)

ATGACAAAGCTTTATTCGTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCGGTACCTCAAGAAGCCTTAGCCGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGATGCCTCCCGTCAGTGCATACCAACTGATCCTGGCCAAACTATCTACGCTTGTTATTGTTTCTATAATTGTGGTTAA

Protein sequence

MTKLYSSWILTIVLIIAVAMISVPQEALAARCQDILYNSGCTLADCGQKCWEKHHDASRQCIPTDPGQTIYACYCFYNCG*
Homology
BLAST of Chy12G212410 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.5e-37
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISVPQEALAARCQDILYNSGCTLADCGQKCWEKHHDASRQ 60
          MTKLYSSWILTIVLIIAVAMIS+PQ ALAARCQDILYNSGCTLADCGQKCWEKHH+ASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPGQTIYACYCFYNCG 81
          CIPTDP QTIYACYCFY CG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

BLAST of Chy12G212410 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISVPQEALAA-RCQDILYNSGCTLADCGQKCWEKHHDASR 60
          MTKLYSSWILTI L IAVAMI VPQ ALA  RCQD LY++GCTLADCGQKCWEKHHDAS 
Sbjct: 1  MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 61 QCIPTDPGQTIYACYCFYNCG 81
          QCIPTDPGQTIYACYCFYNCG
Sbjct: 61 QCIPTDPGQTIYACYCFYNCG 81

BLAST of Chy12G212410 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 6  SSWILTIVLIIAVAMISVPQEALAA-RCQDILYNSGCTLADCGQKCWEKHHDASRQCIPT 65
          SS I+   LI AVA++   Q+  AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPGQTIYACYCFYNCG 81
          +P QTIYACYCF++CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

BLAST of Chy12G212410 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISVPQEALAARCQDILYNSGCTLADCGQKCWEKHHDASRQ 60
          M  L S  +  I++I AV+MI VPQ   A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPGQTIYACYCFYNC 80
          CI TDP  T YACYCFYNC
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

BLAST of Chy12G212410 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.4e-13
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 22  SVPQEALAARCQDILYNSGCTLADCGQKCWEKHHDASRQCIPTDPGQTIYACYCFYNC 80
           +VPQ     RC + LY SGCTL+DCG+KCWEKHHD   +CI  +  QT YACYC +NC
Sbjct: 56  NVPQAYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

BLAST of Chy12G212410 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 163 bits (412), Expect = 1.57e-50
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISVPQEALAARCQDILYNSGCTLADCGQKCWEKHHDASRQ 60
          MTKLYSSWILTIVLIIAVAMIS+PQ ALAARCQDILYNSGCTLADCGQKCWEKHH+ASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPGQTIYACYCFYNCG 80
          CIPTDP QTIYACYCFY CG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

BLAST of Chy12G212410 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (379), Expect = 1.87e-45
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISVPQEALAAR-CQDILYNSGCTLADCGQKCWEKHHDASR 60
          MTKLYSSWILTI L IAVAMI VPQ ALA R CQD LY++GCTLADCGQKCWEKHHDAS 
Sbjct: 1  MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 61 QCIPTDPGQTIYACYCFYNCG 80
          QCIPTDPGQTIYACYCFYNCG
Sbjct: 61 QCIPTDPGQTIYACYCFYNCG 81

BLAST of Chy12G212410 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 6.93e-27
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 19 AMISVPQEALAA-RCQDILYNSGCTLADCGQKCWEKHHDASRQCIPTDPGQTIYACYCFY 78
          A++   Q+  AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT+P QTIYACYCF+
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 79 NCG 80
          +CG
Sbjct: 61 DCG 63

BLAST of Chy12G212410 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 81.6 bits (200), Expect = 7.90e-18
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 22  SVPQEALAARCQDILYNSGCTLADCGQKCWEKHHDASRQCIPTDPGQTIYACYCFYNC 79
           +VPQ     RC + LY SGCTL+DCG+KCWEKHHD   +CI  +  QT YACYC +NC
Sbjct: 56  NVPQAYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

BLAST of Chy12G212410 vs. NCBI nr
Match: CAB4286917.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 80.9 bits (198), Expect = 9.32e-18
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 22 SVPQEALAARCQDILYNSGCTLADCGQKCWEKHHDASRQCIPTDPGQTIYACYCFYNC 79
          +VPQ     RC++ LY+SGCTL DCG+KCW+KHHDA   C+  +  Q  YACYC +NC
Sbjct: 36 NVPQAYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYCMFNC 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LVZ52.5e-3793.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A5A7THQ71.7e-3387.65S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0L2R31.5e-2164.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A0A0KYP71.3e-1453.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A4Y1RT059.4e-1358.62Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
KGN64987.11.57e-5093.75hypothetical protein Csa_022748 [Cucumis sativus][more]
KAA0042348.11.87e-4587.65S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KAE8649772.16.93e-2766.67hypothetical protein Csa_012405, partial [Cucumis sativus][more]
BBH07492.17.90e-1858.62hypothetical protein Prudu_019451 [Prunus dulcis][more]
CAB4286917.19.32e-1855.17unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 30..79
e-value: 4.5E-7
score: 30.2
IPR010851Defensin-like proteinPANTHERPTHR33830DEFENSIN-LIKE PROTEIN 184-RELATEDcoord: 1..79
NoneNo IPR availablePANTHERPTHR33830:SF21DEFENSIN-LIKE PROTEIN 140-RELATEDcoord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G212410.1Chy12G212410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0031640 killing of cells of other organism