Chy12G209310 (gene) Cucumber (hystrix) v1

Overview
NameChy12G209310
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionzinc finger protein CONSTANS-LIKE 6
LocationchrH12: 3550113 .. 3551552 (-)
RNA-Seq ExpressionChy12G209310
SyntenyChy12G209310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGAGAGAGAAGTGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAACTTCATGAACAACAAGTTCCTACACCTTCTTCCATTTGGGAAGATGATTTCAGAGCTTTTTTCGACCTCACCCACGAAGAAACCCCCCCGCCGCCGCTGCATCACCCGGACTACTACCTTTTCCAGGACCACGTCAATGACGTTATGGAAAACAACAACAAGGTTTCTAATTTGAATTTAAATCTTAACTATGAAGAGGTTTTGGAAGCATGGTCCGACCGTGGATCTCTTTGGGCCGCTGCATCCTCTTCTCATTCCAACGACTCAACTCACGCCCCTTATGTAAGCATCGTCATTCCCTCCTTCATGTCCCTTCACTTCCTGCTTCTTTTCATACCTGAAGTAGTTCCATTTTCTGTACACTTCACACACACACATTCATTGTAAAAAAAAATATGAAAGTTATTGATAATGTTGAATATATATATAATATATGAGTGTGTGTGTATAGATGGGAGAGGTTCCAATAATAAGAATGGAGGAAGAAAGAAGAAGAAGGGTGAAGAGATATAAGGAAAAGCGTCAAGCAAGAATATTCTGTAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCTGACAGAAGGCCTAGAATTAAGGTCTTTCTTTTTTTCTTTTATTTCTTTTATTATACTATACTTTACTTATGATCTTATTCATCATCTTTTCATTACCATCTCATTTAACACCTAGCTACCTTATTATATTGAAAACGTTTTTCAAAACCTCATACTCATACGAAGAAAATAGTTACACCCATGGCCATGTATTAACTTCTTTTAAAAATATATAAGGAAAGAAAAAATCATTTGGTAACCATTTTAATTACCTTTTTTCTAAGATAAACCCTTTAATTTTTAGTTAACTTCTAAAAATAAAAACTACTATTGAAAATTCTCTCTTTTTTAGTTTTCAAAATTTAGCTTGGTTTCTTCAAACATGGGTGGAGTACGTATGGATAAATAAAAAGAAAAGAAAAACTAGAAAACCCTAAACCATGAAGACCCCTTTTAAGTAATCATTTTGTTAATGGTTTATGAAAAATGTTATTTGAATATTCCATTGATGTGAAGAAATTAAAGTGTTGATTTGATTTGACACAGGGGCGTTTTGTGAAGACAGATTGTTGAATGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGTTGAAAAATATCTCAACACAAAAATAAAAGTCTCTCTCCAACTTTTCCTTTATTAACATTCTTCATGAAAATATCTAAAATTTGTATGCACTTTATTATTTCACATAGATATAATATATCTGTGTGATGCTCAGAAGCTTTGTGTGTGGGACTGTGGGGTTTCTAATTTCAATAATGGTGGGTCTGATCTCCAGAGGGACCCCAACTTAATTGTCTATTGA

mRNA sequence

ATGGAAGAGAGAGAGAAGTGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAACTTCATGAACAACAAGTTCCTACACCTTCTTCCATTTGGGAAGATGATTTCAGAGCTTTTTTCGACCTCACCCACGAAGAAACCCCCCCGCCGCCGCTGCATCACCCGGACTACTACCTTTTCCAGGACCACGTCAATGACGTTATGGAAAACAACAACAAGGTTTCTAATTTGAATTTAAATCTTAACTATGAAGAGGTTTTGGAAGCATGGTCCGACCGTGGATCTCTTTGGGCCGCTGCATCCTCTTCTCATTCCAACGACTCAACTCACGCCCCTTATAAGCTTTGTGTGTGGGACTGTGGGGTTTCTAATTTCAATAATGGTGGGTCTGATCTCCAGAGGGACCCCAACTTAATTGTCTATTGA

Coding sequence (CDS)

ATGGAAGAGAGAGAGAAGTGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAACTTCATGAACAACAAGTTCCTACACCTTCTTCCATTTGGGAAGATGATTTCAGAGCTTTTTTCGACCTCACCCACGAAGAAACCCCCCCGCCGCCGCTGCATCACCCGGACTACTACCTTTTCCAGGACCACGTCAATGACGTTATGGAAAACAACAACAAGGTTTCTAATTTGAATTTAAATCTTAACTATGAAGAGGTTTTGGAAGCATGGTCCGACCGTGGATCTCTTTGGGCCGCTGCATCCTCTTCTCATTCCAACGACTCAACTCACGCCCCTTATAAGCTTTGTGTGTGGGACTGTGGGGTTTCTAATTTCAATAATGGTGGGTCTGATCTCCAGAGGGACCCCAACTTAATTGTCTATTGA

Protein sequence

MEEREKCFSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYLFQDHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHAPYKLCVWDCGVSNFNNGGSDLQRDPNLIVY*
Homology
[Close]
BLAST of Chy12G209310 vs. ExPASy TrEMBL
Match: A0A0A0LYC0 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G533540 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.3e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0 

Query: 1   MEEREKCFSWLVKSPKKE-LHEQQ-VPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYL 60
           MEERE CFSWLVKSPKKE LHEQQ VPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYY 
Sbjct: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH 60

Query: 61  FQDHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHAPY 113
           FQ+HVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTH PY
Sbjct: 61  FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPY 114

[Close]
BLAST of Chy12G209310 vs. ExPASy TrEMBL
Match: A0A6J1HJ00 (zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita moschata OX=3662 GN=LOC111464884 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 58/152 (38.16%), Postives = 74/152 (48.68%), Query Frame = 0 

Query: 8   FSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPP------------PPL---- 67
           +S L+KSPKKE  E++   P+SIW DDF+AFF+L++EE  P             PL    
Sbjct: 3   YSSLLKSPKKEGEEEEQEVPNSIW-DDFKAFFELSNEEKLPLQQQENFSIVNGGPLNWDL 62

Query: 68  --HHPD--YYLFQDHVN---------------------------DVMENNNKVSNLNLNL 113
             HH +  + L +   N                           D +  + K ++LNLNL
Sbjct: 63  MDHHSNHQFSLSETKANHGGHGYGIEAEAEAFSRVVPKACSFDGDGVMKSKKKASLNLNL 122

[Close]
BLAST of Chy12G209310 vs. ExPASy TrEMBL
Match: A0A6J1DLJ5 (uncharacterized protein LOC111022043 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022043 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 51/146 (34.93%), Postives = 66/146 (45.21%), Query Frame = 0 

Query: 8   FSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYLFQDHVND-- 67
           +SW +KSPK+E  EQ+V  P+   + DF AF +   ++ PPPP    D +L      D  
Sbjct: 3   YSWFLKSPKEE--EQEV--PNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGGPPDWG 62

Query: 68  -----------VMENNNKVS----------------------------NLNLNLNYEEVL 113
                      V+   N V                             +L LNLNYEEVL
Sbjct: 63  LNFDYEYFPVPVLSQTNIVGANEEAAAAAAFGRVSDDGDGRKKEEEEISLKLNLNYEEVL 122

[Close]
BLAST of Chy12G209310 vs. ExPASy TrEMBL
Match: A0A6J1DMX8 (zinc finger protein CONSTANS-LIKE 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022043 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 51/146 (34.93%), Postives = 66/146 (45.21%), Query Frame = 0 

Query: 8   FSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYLFQDHVND-- 67
           +SW +KSPK+E  EQ+V  P+   + DF AF +   ++ PPPP    D +L      D  
Sbjct: 3   YSWFLKSPKEE--EQEV--PNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGGPPDWG 62

Query: 68  -----------VMENNNKVS----------------------------NLNLNLNYEEVL 113
                      V+   N V                             +L LNLNYEEVL
Sbjct: 63  LNFDYEYFPVPVLSQTNIVGANEEAAAAAAFGRVSDDGDGRKKEEEEISLKLNLNYEEVL 122

[Close]
BLAST of Chy12G209310 vs. ExPASy TrEMBL
Match: A0A6J1I4F9 (zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita maxima OX=3661 GN=LOC111469554 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 55/152 (36.18%), Postives = 70/152 (46.05%), Query Frame = 0 

Query: 8   FSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPPPPL---------------- 67
           +S L+K  KKE  E+Q   P+SI  DDF+AFF+L++EE  P                   
Sbjct: 3   YSSLLKGLKKEEEEEQ-EVPNSI-RDDFKAFFELSNEEKLPLQQQENFSIVNGGSLNWDL 62

Query: 68  --HHPD--YYLFQDHVN---------------------------DVMENNNKVSNLNLNL 113
             HH +  + L +   N                           D +  + K ++LNLNL
Sbjct: 63  MDHHSNHQFSLSETKTNHGGHGDGVEAEAEVFSRVVPKACSFDGDGVMKSKKKASLNLNL 122

[Close]
BLAST of Chy12G209310 vs. NCBI nr
Match: KGN65847.1 (hypothetical protein Csa_023240 [Cucumis sativus])

HSP 1 Score: 220 bits (561), Expect = 6.48e-71
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0 

Query: 1   MEEREKCFSWLVKSPKKEL-HEQQV-PTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYL 60
           MEERE CFSWLVKSPKKEL HEQQV PTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYY 
Sbjct: 1   MEEREVCFSWLVKSPKKELLHEQQVVPTPSSIWEDDFRAFFDLTHEETPPPPLHHPDYYH 60

Query: 61  FQDHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHAPY 112
           FQ+HVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTH PY
Sbjct: 61  FQNHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHTPY 114

[Close]
BLAST of Chy12G209310 vs. NCBI nr
Match: XP_038893946.1 (zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida])

HSP 1 Score: 145 bits (367), Expect = 1.48e-41
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 0 

Query: 1   MEEREKCFSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPP-PPLHHPDYYLF 60
           MEERE  FSWLVKSPKKE  EQQVP  +SIWEDDF+AFF+LT EE PP PPL  PDY+  
Sbjct: 1   MEEREMGFSWLVKSPKKE-DEQQVP--NSIWEDDFKAFFELTDEENPPRPPLQQPDYHF- 60

Query: 61  QDHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHAPY 112
             H    MEN NK+S LNLNLNYEEVLEAWSDRGSLWAAA+SS ++D+TH PY
Sbjct: 61  --HDGAFMENKNKIS-LNLNLNYEEVLEAWSDRGSLWAAAASSLTDDATHDPY 106

[Close]
BLAST of Chy12G209310 vs. NCBI nr
Match: XP_038893945.1 (zinc finger protein CONSTANS-LIKE 7 isoform X2 [Benincasa hispida])

HSP 1 Score: 145 bits (367), Expect = 2.47e-41
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 0 

Query: 1   MEEREKCFSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPP-PPLHHPDYYLF 60
           MEERE  FSWLVKSPKKE  EQQVP  +SIWEDDF+AFF+LT EE PP PPL  PDY+  
Sbjct: 1   MEEREMGFSWLVKSPKKE-DEQQVP--NSIWEDDFKAFFELTDEENPPRPPLQQPDYHF- 60

Query: 61  QDHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHAPY 112
             H    MEN NK+S LNLNLNYEEVLEAWSDRGSLWAAA+SS ++D+TH PY
Sbjct: 61  --HDGAFMENKNKIS-LNLNLNYEEVLEAWSDRGSLWAAAASSLTDDATHDPY 106

[Close]
BLAST of Chy12G209310 vs. NCBI nr
Match: XP_038893944.1 (zinc finger protein CONSTANS-LIKE 16 isoform X1 [Benincasa hispida])

HSP 1 Score: 145 bits (367), Expect = 7.86e-41
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 0 

Query: 1   MEEREKCFSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPP-PPLHHPDYYLF 60
           MEERE  FSWLVKSPKKE  EQQVP  +SIWEDDF+AFF+LT EE PP PPL  PDY+  
Sbjct: 1   MEEREMGFSWLVKSPKKE-DEQQVP--NSIWEDDFKAFFELTDEENPPRPPLQQPDYHF- 60

Query: 61  QDHVNDVMENNNKVSNLNLNLNYEEVLEAWSDRGSLWAAASSSHSNDSTHAPY 112
             H    MEN NK+S LNLNLNYEEVLEAWSDRGSLWAAA+SS ++D+TH PY
Sbjct: 61  --HDGAFMENKNKIS-LNLNLNYEEVLEAWSDRGSLWAAAASSLTDDATHDPY 106

[Close]
BLAST of Chy12G209310 vs. NCBI nr
Match: XP_023520167.1 (zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.6 bits (187), Expect = 4.73e-14
Identity = 62/151 (41.06%), Postives = 75/151 (49.67%), Query Frame = 0 

Query: 8   FSWLVKSPKKELHEQQVPTPSSIWEDDFRAFFDLTHEETPP------------PPL---- 67
           +S L+KSPKKE  E++   P+SIW DDF+AFF+L++EE  P             PL    
Sbjct: 3   YSSLLKSPKKEGAEEEQEVPNSIW-DDFKAFFELSNEEKLPLQQQENFSIVNGGPLNWDL 62

Query: 68  --HHPDYY--LFQDHVND--------------------------VMENNNKVSNLNLNLN 112
             HH ++   L +   N                           VME+  K S LNLNLN
Sbjct: 63  MDHHSNHQFSLSETKTNHSGHGDGVEAEVFSRVVPKACSFDGDGVMESKKKAS-LNLNLN 122

The following BLAST results are available for this feature:
BLAST of Chy12G209310 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G209310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYC02.3e-5494.74CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G533540 PE=4 SV... [more]
A0A6J1HJ004.5e-1038.16zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita moschata OX=3662 GN=LOC11146488... [more]
A0A6J1DLJ51.0e-0634.93uncharacterized protein LOC111022043 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DMX81.0e-0634.93zinc finger protein CONSTANS-LIKE 6 isoform X1 OS=Momordica charantia OX=3673 GN... [more]
A0A6J1I4F93.0e-0636.18zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita maxima OX=3661 GN=LOC111469554 ... [more]
BLAST of Chy12G209310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65847.16.48e-7194.74hypothetical protein Csa_023240 [Cucumis sativus][more]
XP_038893946.11.48e-4171.68zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida][more]
XP_038893945.12.47e-4171.68zinc finger protein CONSTANS-LIKE 7 isoform X2 [Benincasa hispida][more]
XP_038893944.17.86e-4171.68zinc finger protein CONSTANS-LIKE 16 isoform X1 [Benincasa hispida][more]
XP_023520167.14.73e-1441.06zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo][more]
BLAST of Chy12G209310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G209310.1Chy12G209310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus