Chy12G207770 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G207770
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Osmotin-like protein
Location	chrH12: 2157727 .. 2158728 (+)
RNA-Seq Expression	Chy12G207770
Synteny	Chy12G207770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCTTCACTCTTCCACACCTTACATTTCCTCTATAATGGCCACCATCTCCCTCTCTTTCTTTCTCCCTCTCCTCCTCACTTTCCTTTCCCTCTTCTATCTCTCCGCCGCAACATATCCGGGCAGCGGCCTTATCATGACCCTCGTCAACAACTGCCCCTACCCAATCTGGCCCGCCATCCAACCCAACGCCGGCCATCCCGTCCCTGAACACGGAGGCTTCTACCTCCCCTCCCTCTCCCACCGCTCCTTCCCTGCTCCCTACCAACACTGGTCCGGCCGCGTCTGGGCTCGAACCGGCTGCACCAGTGACCACAACCACTTTACCTGCGCAACCGGCGACTGCGGCGGTAAATTACAATGTAACGGCGCCGGCGGCAAAACCCCAGCCACACTCGCGCAGTTCAGCCTCCACCATGGCCACAAAGACTTCTCCTCTTACGGCGTCAGCCTCGTCGACGGCTTCAATATCCCCTTAACCATAACCCCACACGAAGGCCAAGGCGTGTGTCCGGTCGTAGGCTGTAAAGCGAACCTCCTCCTGACTTGCCCACGCGAGCTTCAAGTCCACGCGCCGGGCCGATACGGCGGAGTTATAGCTTGTAAGAGCGGGTGTGAAGCGCTTAATAGCGACGCGTTTTGCTGTAGAGGGCATTATAATAGCCCACAGACTTGCAATGCGTCGTCGTTTTCGCGTTTCTTCAAGGACGCTTGTCCTTCTACTTTTACTTATGCTCACGATACTCCTTCGCTTATGCATGAGTGTGCTGCGCCACGTGAGCTTAAAGTTATTTTCTGCCACTAATATTGCTTACGTGGACATGCCACGTCTGTGTTCCTGGGTCTAACTTTGTTGACGTGTCGTCGTGGTTGTTGTTGTTGTATGGTATGTAGATTTTTCTAGTGGGTTTGAAAGTTTTAGATGTCTTTTCTATGCAAAAATATGTACTATCTATCCGTTACTTTTAATTAAAATAAAGTGAATAAAATTATTAATCATTA

mRNA sequence

CCACCTTCACTCTTCCACACCTTACATTTCCTCTATAATGGCCACCATCTCCCTCTCTTTCTTTCTCCCTCTCCTCCTCACTTTCCTTTCCCTCTTCTATCTCTCCGCCGCAACATATCCGGGCAGCGGCCTTATCATGACCCTCGTCAACAACTGCCCCTACCCAATCTGGCCCGCCATCCAACCCAACGCCGGCCATCCCGTCCCTGAACACGGAGGCTTCTACCTCCCCTCCCTCTCCCACCGCTCCTTCCCTGCTCCCTACCAACACTGGTCCGGCCGCGTCTGGGCTCGAACCGGCTGCACCAGTGACCACAACCACTTTACCTGCGCAACCGGCGACTGCGGCGGTAAATTACAATGTAACGGCGCCGGCGGCAAAACCCCAGCCACACTCGCGCAGTTCAGCCTCCACCATGGCCACAAAGACTTCTCCTCTTACGGCGTCAGCCTCGTCGACGGCTTCAATATCCCCTTAACCATAACCCCACACGAAGGCCAAGGCGTGTGTCCGGTCGTAGGCTGTAAAGCGAACCTCCTCCTGACTTGCCCACGCGAGCTTCAAGTCCACGCGCCGGGCCGATACGGCGGAGTTATAGCTTGTAAGAGCGGGTGTGAAGCGCTTAATAGCGACGCGTTTTGCTGTAGAGGGCATTATAATAGCCCACAGACTTGCAATGCGTCGTCGTTTTCGCGTTTCTTCAAGGACGCTTGTCCTTCTACTTTTACTTATGCTCACGATACTCCTTCGCTTATGCATGAGTGTGCTGCGCCACGTGAGCTTAAAGTTATTTTCTGCCACTAATATTGCTTACGTGGACATGCCACGTCTGTGTTCCTGGGTCTAACTTTGTTGACGTGTCGTCGTGGTTGTTGTTGTTGTATGGTATGTAGATTTTTCTAGTGGGTTTGAAAGTTTTAGATGTCTTTTCTATGCAAAAATATGTACTATCTATCCGTTACTTTTAATTAAAATAAAGTGAATAAAATTATTAATCATTA

Coding sequence (CDS)

CCACCTTCACTCTTCCACACCTTACATTTCCTCTATAATGGCCACCATCTCCCTCTCTTTCTTTCTCCCTCTCCTCCTCACTTTCCTTTCCCTCTTCTATCTCTCCGCCGCAACATATCCGGGCAGCGGCCTTATCATGACCCTCGTCAACAACTGCCCCTACCCAATCTGGCCCGCCATCCAACCCAACGCCGGCCATCCCGTCCCTGAACACGGAGGCTTCTACCTCCCCTCCCTCTCCCACCGCTCCTTCCCTGCTCCCTACCAACACTGGTCCGGCCGCGTCTGGGCTCGAACCGGCTGCACCAGTGACCACAACCACTTTACCTGCGCAACCGGCGACTGCGGCGGTAAATTACAATGTAACGGCGCCGGCGGCAAAACCCCAGCCACACTCGCGCAGTTCAGCCTCCACCATGGCCACAAAGACTTCTCCTCTTACGGCGTCAGCCTCGTCGACGGCTTCAATATCCCCTTAACCATAACCCCACACGAAGGCCAAGGCGTGTGTCCGGTCGTAGGCTGTAAAGCGAACCTCCTCCTGACTTGCCCACGCGAGCTTCAAGTCCACGCGCCGGGCCGATACGGCGGAGTTATAGCTTGTAAGAGCGGGTGTGAAGCGCTTAATAGCGACGCGTTTTGCTGTAGAGGGCATTATAATAGCCCACAGACTTGCAATGCGTCGTCGTTTTCGCGTTTCTTCAAGGACGCTTGTCCTTCTACTTTTACTTATGCTCACGATACTCCTTCGCTTATGCATGAGTGTGCTGCGCCACGTGAGCTTAAAGTTATTTTCTGCCACTAATATTGCTTACGTGGACATGCCACGTCTGTGTTCCTGGGTCTAACTTTGTTGACGTGTCGTCGTGGTTGTTGTTGTTGTATGGTATGTAGATTTTTCTAGTGGGTTTGAAAGTTTTAGATGTCTTTTCTATGCAAAAATATGTACTATCTATCCGTTACTTTTAATTAAAATAAAGTGAATAAAATTATTAATCATTA

Protein sequence

PPSLFHTLHFLYNGHHLPLFLSPSPPHFPFPLLSLRRNISGQRPYHDPRQQLPLPNLARHPTQRRPSRP*TRRLLPPLPLPPLLPCSLPTLVRPRLGSNRLHQ*PQPLYLRNRRLRR*ITM*RRRRQNPSHTRAVQPPPWPQRLLLLRRQPRRRLQYPLNHNPTRRPRRVSGRRL*SEPPPDLPTRASSPRAGPIRRSYSL*ERV*SA**RRVLL*RAL**PTDLQCVVVFAFLQGRLSFYFYLCSRYSFAYA*VCCAT*A*SYFLPLILLTWTCHVCVPGSNFVDVSSWLLLLYGM*IFLVGLKVLDVFSMQKYVLSIRYF*LK*SE*NY*SL

Homology

[Close]

BLAST of Chy12G207770 vs. ExPASy TrEMBL
Match: A0A5B6Z8R1 (Putative osmotin-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009901 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 80/167 (47.90%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 7   TLHFLYNGHHLPLFLSPSPPHFP-FPLLSLRRNISGQRPYHDPRQQLPLPNLARHPTQRR 66
           T+  LY  H   LF S +   FP +P+   +R   G   Y + RQQLPL +LA HPTQ R
Sbjct: 15  TISTLYFNH--GLFYSSAFIFFPAYPVHPHQRYAPG--AYFNSRQQLPLHDLASHPTQLR 74

Query: 67  PSRP*TRRLLPPLPLPPLLPCSLPTLVRPRLGSNRLHQ*PQPLYLRNRRLRR*ITM*RRR 126
           P RP  RR  P    PPLLPC  P L    +G + LH   +PL +R RRLRR   + R R
Sbjct: 75  PPRPRARRFRPREADPPLLPCPNPALDGAPVGPHGLHLRSRPLLVRYRRLRRPPGVQRSR 134

Query: 127 RQNPSHTRAVQPPPWPQRLLLLRRQPRRRLQYPLNHNPTRRPRRVSG 173
           R++P H   VQPPP P R +LLRRQPRRRLQ P + +P R  R V G
Sbjct: 135 RRHPRHPSPVQPPPRPHRPILLRRQPRRRLQSPDDRDPARGQRHVPG 177

[Close]

BLAST of Chy12G207770 vs. ExPASy TrEMBL
Match: A0A059AFS3 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J02061 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 47  DPRQQLPLPNLARHPTQRRPSRP*TRRLLPPLPLPPLLPCSLPTLVRPRLGSNRL 102
           DP QQLPL  +A HP QRRP RP  RRL PP P PPLLP   P LVRPRLG +RL
Sbjct: 4   DPGQQLPLHGVACHPAQRRPPRPRARRLPPPHPHPPLLPAPTP-LVRPRLGPHRL 57

[Close]

BLAST of Chy12G207770 vs. ExPASy TrEMBL
Match: A0A438G1Q7 (Osmotin-like protein OS=Vitis vinifera OX=29760 GN=OLP1 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 52/111 (46.85%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 15  HHLPLFLSPSPPHFPFPLLSLRRNISGQRPYHDPRQQLPLPNLARHPTQRRPSRP*TRRL 74
           HHL +F        PFPL  L     G   + + RQQL L +LA HP +RRP RP   RL
Sbjct: 56  HHLLVFCFLC--GVPFPLHPLPCYEPG--AHFNRRQQLSLYHLASHPAKRRPRRPGAWRL 115

Query: 75  LPPLPLPPLLPCSLPTLVRPRLGSNRLHQ*PQPLYLRNRRLRR*ITM*RRR 126
            PP P PPLL      LVRP LGS+R+H   + + LR+RRLRR   M R R
Sbjct: 116 RPPHPHPPLLLRPFSPLVRPDLGSHRMHLHQRQVLLRHRRLRRPPRMQRLR 162

[Close]

BLAST of Chy12G207770 vs. NCBI nr
Match: KCW52693.1 (hypothetical protein EUGRSUZ_J02061, partial [Eucalyptus grandis])

HSP 1 Score: 64.7 bits (156), Expect = 5.11e-08
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 47  DPRQQLPLPNLARHPTQRRPSRP*TRRLLPPLPLPPLLPCSLPTLVRPRLGSNRL 101
           DP QQLPL  +A HP QRRP RP  RRL PP P PPLLP   P LVRPRLG +RL
Sbjct: 4   DPGQQLPLHGVACHPAQRRPPRPRARRLPPPHPHPPLLPAPTP-LVRPRLGPHRL 57

[Close]

BLAST of Chy12G207770 vs. NCBI nr
Match: GFP81729.1 (osmotin-like protein [Phtheirospermum japonicum])

HSP 1 Score: 64.3 bits (155), Expect = 5.68e-08
Identity = 46/92 (50.00%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 67  SRP*TRRLLPPLPLPPLLPCSLPTLVRPRLGSNRLHQ*PQPLYLRNRRLRR*ITM*RRRR 126
           +RP +    PP P PPLLP     LVRP LG +RL    + L LR+R L R   + R +R
Sbjct: 31  TRPSSAAAHPPHPHPPLLPRPPIPLVRPHLGPHRLLPLQRQLLLRHRLLWRPPRVRRPQR 90

Query: 127 QNPSHTRAVQPPPWPQRLLLLRRQPRRRLQYP 158
           + P H  AV PPP   R LLLRRQPRR+LQ P
Sbjct: 91  RRPRHPDAVLPPPRRHRPLLLRRQPRRQLQRP 122

[Close]

BLAST of Chy12G207770 vs. NCBI nr
Match: RVW66149.1 (Osmotin-like protein [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 6.42e-08
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 29  PFPLLSLRRNISGQRPYHDPRQQLPLPNLARHPTQRRPSRP*TRRLLPPLPLPPLLPCSL 88
           PFPL  L     G   + + RQQL L +LA HP +RRP RP   RL PP P PPLL    
Sbjct: 68  PFPLHPLPCYEPGA--HFNRRQQLSLYHLASHPAKRRPRRPGAWRLRPPHPHPPLLLRPF 127

Query: 89  PTLVRPRLGSNRLHQ*PQPLYLRNRRLRR 117
             LVRP LGS+R+H   + + LR+RRLRR
Sbjct: 128 SPLVRPDLGSHRMHLHQRQVLLRHRRLRR 154

The following BLAST results are available for this feature:

BLAST of Chy12G207770 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G207770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B6Z8R1	1.3e-20	47.90	Putative osmotin-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_...	[more]
A0A059AFS3	1.1e-06	67.27	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J02...	[more]
A0A438G1Q7	1.4e-06	46.85	Osmotin-like protein OS=Vitis vinifera OX=29760 GN=OLP1 PE=4 SV=1	[more]

BLAST of Chy12G207770 vs. NCBI nr


Match Name	E-value	Identity	Description
KCW52693.1	5.11e-08	67.27	hypothetical protein EUGRSUZ_J02061, partial [Eucalyptus grandis]	[more]
GFP81729.1	5.68e-08	50.00	osmotin-like protein [Phtheirospermum japonicum]	[more]
RVW66149.1	6.42e-08	50.56	Osmotin-like protein [Vitis vinifera]	[more]

BLAST of Chy12G207770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G207770.1	Chy12G207770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response