Chy12G207450 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G207450
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH12: 1645818 .. 1646234 (+)
RNA-Seq Expression	Chy12G207450
Synteny	Chy12G207450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATTGCCCGAGCTGACGGCAGAGCTCCTCATGGGTTGGTATATGAGAGCCCGGTGGCCTTTTCTCCAATGGCATATGATTTCTTCCATCCAAGCACTCAGAATCCCAGTGGGAAAGACCCATGTGGTGATTCCAAATGTTCCCCCCTTCCCCTTGCGGCACAAGTGCAATCCACTCCTGCAAAAGAAAGCAAATACTCCACAACGATCCAGAACAGTAACCACCGTGTGGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGACAATGGGAGTGTACTATGTTCTACGTACACGCCAAGCCAATGCAAACCGAGCTATGTCTGCTGCACAACCTAGCGCTTGA

mRNA sequence

ATGACTCGAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATTGCCCGAGCTGACGGCAGAGCTCCTCATGGGTTGGTATATGAGAGCCCGGTGGCCTTTTCTCCAATGGCATATGATTTCTTCCATCCAAGCACTCAGAATCCCAGTGGGAAAGACCCATGTGGTGATTCCAAATGTTCCCCCCTTCCCCTTGCGGCACAAGTGCAATCCACTCCTGCAAAAGAAAGCAAATACTCCACAACGATCCAGAACAGTAACCACCGTGTGGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGACAATGGGAGTGTACTATGTTCTACGTACACGCCAAGCCAATGCAAACCGAGCTATGTCTGCTGCACAACCTAGCGCTTGA

Coding sequence (CDS)

ATGACTCGAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATTGCCCGAGCTGACGGCAGAGCTCCTCATGGGTTGGTATATGAGAGCCCGGTGGCCTTTTCTCCAATGGCATATGATTTCTTCCATCCAAGCACTCAGAATCCCAGTGGGAAAGACCCATGTGGTGATTCCAAATGTTCCCCCCTTCCCCTTGCGGCACAAGTGCAATCCACTCCTGCAAAAGAAAGCAAATACTCCACAACGATCCAGAACAGTAACCACCGTGTGGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGACAATGGGAGTGTACTATGTTCTACGTACACGCCAAGCCAATGCAAACCGAGCTATGTCTGCTGCACAACCTAGCGCTTGA

Protein sequence

MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCGDSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVLRTRQANANRAMSAAQPSA*

Homology

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BLAST of Chy12G207450 vs. ExPASy TrEMBL
Match: A0A0A0LV85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCL+SFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPAKESKYSTTIQ+SNHRVGAGGILGIVFGITFAVFLTMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPSA 139
           RTRQANANRAMSAAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

[Close]

BLAST of Chy12G207450 vs. ExPASy TrEMBL
Match: A0A5A7SXJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00600 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCLSSFTFLS+ARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPA+ESKYSTTIQNS HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPSA 139
           RTRQANANRAMSAAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

[Close]

BLAST of Chy12G207450 vs. ExPASy TrEMBL
Match: A0A1S3C6E2 (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCLSSFTFLS+ARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPA+ESKYSTTIQNS HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPSA 139
           RTRQANANRAMSAAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

[Close]

BLAST of Chy12G207450 vs. ExPASy TrEMBL
Match: A0A6J1DWP3 (uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025099 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 111/138 (80.43%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MT+MLTFLFCLSS TFLS+ARA+GRAPHGLVYESP+AFSPMAYDFFHPS QN + KDPC 
Sbjct: 1   MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
            SKCSPLPLAAQVQSTPA++SKYST +Q   H +GAGG+LGIV GI FAVFL MGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPSA 139
           RTRQANANRAMS  QP A
Sbjct: 121 RTRQANANRAMS-TQPGA 137

[Close]

BLAST of Chy12G207450 vs. ExPASy TrEMBL
Match: A0A6J1GD80 (uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC111452884 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.7e-49
Identity = 104/133 (78.20%), Postives = 114/133 (85.71%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           M + LTFLF LSSF+FLSI RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++P+ +DPCG
Sbjct: 1   MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
            SKCSPLPLAAQ+QS PA+ESKYSTT Q      G GGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSA 134
           RTR AN NRAMSA
Sbjct: 121 RTRLANTNRAMSA 130

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BLAST of Chy12G207450 vs. NCBI nr
Match: XP_011657962.2 (uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical protein Csa_020080 [Cucumis sativus])

HSP 1 Score: 273 bits (699), Expect = 1.82e-92
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCL+SFTFLSIA+ADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIAQADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPSA 138
           RTRQANANRAMSAAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

[Close]

BLAST of Chy12G207450 vs. NCBI nr
Match: XP_008457527.1 (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 uncharacterized protein E6C27_scaffold43059G00740 [Cucumis melo var. makuwa] >TYK01273.1 uncharacterized protein E5676_scaffold49G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (688), Expect = 8.69e-91
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCLSSFTFLS+ARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPA+ESKYSTTIQNS HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPSA 138
           RTRQANANRAMSAAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

[Close]

BLAST of Chy12G207450 vs. NCBI nr
Match: KAG7019217.1 (hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247 bits (631), Expect = 4.14e-82
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MT+MLTFLFCLSSFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
            SKCSPLPLAAQVQSTPAKESKYSTTIQ   HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPS 137
           RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSA-QPS 136

[Close]

BLAST of Chy12G207450 vs. NCBI nr
Match: KAG6583459.1 (hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245 bits (625), Expect = 3.40e-81
Identity = 124/137 (90.51%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MT+MLTFLFCLSSFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
            SKCSPLPLAAQVQSTPAKESKYSTTIQ   HRVGAGGILGIVFGITFAV L MGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120

Query: 121 RTRQANANRAMSAAQPS 137
           RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSA-QPS 136

[Close]

BLAST of Chy12G207450 vs. NCBI nr
Match: XP_038876402.1 (uncharacterized protein LOC120068840 [Benincasa hispida])

HSP 1 Score: 243 bits (621), Expect = 1.25e-80
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCL+SFTFLSIARA GRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKD CG
Sbjct: 1   MTRMLTFLFCLTSFTFLSIARAQGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDLCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           +SKCSPLPLAAQVQSTPA+ESKYSTTIQ  NHRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAM 131
            TRQANANRA+
Sbjct: 121 HTRQANANRAV 131

[Close]

BLAST of Chy12G207450 vs. TAIR 10
Match: AT2G28410.1 (unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-20
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 1   MTRMLTFLFCLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGK-DPC 60
           MT     +F  SS    + A A  RAPHGL YE+PVAFSP A+DFFH   +NP    +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GDSKCSPLPLAAQVQ--STPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFL 113
            +S CSPLP+AA+VQ  S  A+ES   +    +   +   G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

[Close]

BLAST of Chy12G207450 vs. TAIR 10
Match: AT5G60650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-15
Identity = 51/140 (36.43%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 1   MTRMLTFLF-CLSSFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHP----STQNPSG 60
           +T  L F F CLS    +SI  A  R  HG  Y +P AFSP AYDFFHP    S  N   
Sbjct: 4   LTHSLLFFFSCLSMLLCVSI--AGSRPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPP 63

Query: 61  KDPCGDSKCSPLPLAAQVQSTPAKESKYS----TTIQNSNHRVGAGGILGIVFGITFAVF 120
           K        SP P    +    ++ SK S    TT ++     G G  +G+V G++F  F
Sbjct: 64  KSSPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAF 123

Query: 121 LTMGVYYVLRTRQANANRAM 132
           L++G+Y+V++ ++AN  R +
Sbjct: 124 LSLGIYFVIKKQRANIIRTI 141

The following BLAST results are available for this feature:

BLAST of Chy12G207450 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G207450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV85	1.4e-69	98.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1	[more]
A0A5A7SXJ1	2.1e-68	96.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C6E2	2.1e-68	96.38	uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=...	[more]
A0A6J1DWP3	1.3e-54	80.43	uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1GD80	3.7e-49	78.20	uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]

BLAST of Chy12G207450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657962.2	1.82e-92	98.55	uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical ...	[more]
XP_008457527.1	8.69e-91	96.38	PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 unc...	[more]
KAG7019217.1	4.14e-82	91.24	hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583459.1	3.40e-81	90.51	hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038876402.1	1.25e-80	91.60	uncharacterized protein LOC120068840 [Benincasa hispida]	[more]

BLAST of Chy12G207450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28410.1	2.7e-20	45.22	unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bact...	[more]
AT5G60650.1	5.9e-15	36.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35718	EXPRESSED PROTEIN	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G207450.1	Chy12G207450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane