Chy11G204590 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G204590
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 25025068 .. 25027239 (-)
RNA-Seq Expression	Chy11G204590
Synteny	Chy11G204590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTCAAAGGAAGTTGAATCAGGTGAGCCCCCAGCAGAGAGATTTAATGGCAATGATGAAGAGATAAATGGGGGAGGGGTTATAATGCTGACTGGGACATGTAGAAAAGATCCCACGTGGAGGGAGGAAGAGGAGGGCATGGGGTGAGGGGGCCACACGTCAGCATCTTTGGACCTCAAAAAAAACCAAGCTGCAAAGGGAATTTGAAATTTTTGTTTGAGTTGAAAGGCTGTTTTGTTTTATGGCTCACACCACCCATCTTGCCAACTGGTACACTTCAATATCTATGCTGATAAAACATTAACTCTATATTTTTATGCTTTTTTATTTTAATATGATATGGATTTTTCCTTTTCTTTTCTTTTCTTTCCTCTCTGGAAAAGTCACTAATGACTAAACTTCTTCCTAGGATCTCTATTTCGGAGAAAATTATGTTCTCTGTCTTTCTTTTTTTTTTTTTAGTTTTAGAATGTAATGATCAGCAGTGATTTTGAGGTTAAGTTTTAGAAAAGTGTATTAAAGTGAAACACTCATCTCTAGGCACTTTTTGAAAAAAGTTTTAGTTACACGTGGACAAATTAACTATCTTTCAATTTAAAACAAAATATGATTTATATATCTCTTTGTACTTATGTTTTTTAGGTCAACAATCGCAAGAATGAGGATCAAGATATCAACTTTTGAAAAGGTAATCAATATCTTATCGACTGAACTATACTTAGATTGATGTTATTATCCATGTGAATTACATTGAATGGATACACATATCTTAAAGCATGAGAACTAAAGTATCATTACGTCAAAACCTAAAAGATTCAAGCTTCTTTTTTCCTCTTCTTTTTATGTACATGCTAAGTGGCCACAAGTGTTTGGTTGTATGTAAATCTTAAAAAGAAGAAGAGACATAGAATGAATCTAAAGGTACATTTTAGGTAATAATGAAGTAGATTTAGACGGTGAAAGGTATGATATGAAAGTGTAAAAAGAAGGGTTATGTGGCCATTGGGACTAATATTATATATATTTATTGAAATTATAATCTCAAACTCCTTTTCATGAAAAGTGAGATTTGGAGCCCTATTATATGGGGTTTGGCATTTTCTTTTCTTTTTTTAGAAACTCATATATAAATATAAAGGAGTAGTAGTATTCTATCATCATTCCCAACTTAATTGCTCCTCTCACTCTCATCATCAAACCCCTCAACTTTACATACCTAACACCAACAAAAAATTATCAACATTACATAATATGATAGAGAGAGAAAATCAATGTGTTCATATAAAAATAAAATCATTAGCTATTTAGTCAAAATTAAGTAGGGACAGGACATTCCTATATGGTAGGATGATATCATTTTTGTGGATGTTCATAGTTAATATTGACATACCTCAATTTAAATATCTTGCTAATATATATATATATATATATATATATACTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAAATCATCGCACCCTAAGCCAAGAAATTCAAAAACGATAAATTTTGAAATTTGGGGATAGGGATCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATATGACTCCTTCATGCAGGCCCCACTTGAACTGTATTAATTAAAACCGTTGTTTTTAATAAACAGATGAGATTGCCTTGGAGCTTATGTATTAACAACAACCTTGAGAATGTATTGGAGCAACATCGATTGGTTATGACATACATCAAGTAAGTAATTATAAGATATGTTACTCCACAAATTTAGTATATGAATATTGAATTTTCTGCTTATTTGATCTATGAGCTTTGAAAATTATAAATTCAATCCTTTAAGCTTTAAAAACATAAAATGAAAACTTTAGTCTTCCATTAGACATGAAATTTATATCTATATTTAAGTAAAAGTTCAATAATCTAATAGACACAAATCTCAACATCCACAAACTAAAATTATAATTCTAACAACATAAAAACATATATTCAAGAGTTAAAATAGATATTTTGAAAGTTGAAGAACCCAACTTTTATTCAAGATTAGGGTTTGTTCTTGTTATCAGCAGTCACCCAACCAGCCTTGCAATGCTCCCACACCCAGCTTGGAATTTGATGAACAAGCCTGCCCTAGCTTTCCACTTTTAG

mRNA sequence

ATGGAGTTTTCAAAGGAAGTTGAATCAGGTGAGCCCCCAGCAGAGAGATTTAATGGCAATGATGAAGAGATAAATGGGGGAGGGGTTATAATGCTGACTGGGACATGTAGAAAAGATCCCACGTGGAGGGAGGAAGAGGAGGGCATGGGAATGTAATGATCAGCAGTGATTTTGAGGTCAACAATCGCAAGAATGAGGATCAAGATATCAACTTTTGAAAAGATGAGATTGCCTTGGAGCTTATGTATTAACAACAACCTTGAGAATGTATTGGAGCAACATCGATTGGTTATGACATACATCAAGTAAGGTTTGTTCTTGTTATCAGCAGTCACCCAACCAGCCTTGCAATGCTCCCACACCCAGCTTGGAATTTGATGAACAAGCCTGCCCTAGCTTTCCACTTTTAG

Coding sequence (CDS)

ATGGAGTTTTCAAAGGAAGTTGAATCAGGTGAGCCCCCAGCAGAGAGATTTAATGGCAATGATGAAGAGATAAATGGGGGAGGGGTTATAATGCTGACTGGGACATGTAGAAAAGATCCCACGTGGAGGGAGGAAGAGGAGGGCATGGGAATGTAATGATCAGCAGTGATTTTGAGGTCAACAATCGCAAGAATGAGGATCAAGATATCAACTTTTGAAAAGATGAGATTGCCTTGGAGCTTATGTATTAACAACAACCTTGAGAATGTATTGGAGCAACATCGATTGGTTATGACATACATCAAGTAAGGTTTGTTCTTGTTATCAGCAGTCACCCAACCAGCCTTGCAATGCTCCCACACCCAGCTTGGAATTTGATGAACAAGCCTGCCCTAGCTTTCCACTTTTAG

Protein sequence

MEFSKEVESGEPPAERFNGNDEEINGGGVIMLTGTCRKDPTWREEEEGMGM**SAVILRSTIARMRIKISTFEKMRLPWSLCINNNLENVLEQHRLVMTYIK*GLFLLSAVTQPALQCSHTQLGI**TSLP*LSTFX

Homology

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BLAST of Chy11G204590 vs. ExPASy TrEMBL
Match: A0A0A0K9B0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087880 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 54  SAVILRSTIARMRIKISTFEKMRLPWSLCINNNLENVLEQHRLVMTY 101
           S  +LRSTIARM+IKISTFEKMRLPW LCINNNLENVLEQ +LVMT+
Sbjct: 94  SPSLLRSTIARMKIKISTFEKMRLPWRLCINNNLENVLEQQQLVMTH 140

The following BLAST results are available for this feature:

BLAST of Chy11G204590 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G204590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9B0	2.1e-12	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087880 PE=4 SV=1	[more]

BLAST of Chy11G204590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Chy11G204590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G204590.1	Chy11G204590.1	mRNA