Chy11G202080 (gene) Cucumber (hystrix) v1

Overview
NameChy11G202080
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 22791815 .. 22792139 (+)
RNA-Seq ExpressionChy11G202080
SyntenyChy11G202080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCTCTCTTCGTAACGACATAGATCAACTTCTTAACCTATCCTTTTTCACTTCTTCTGGTAATTAGTACTATTGTCTATGATCTCTAATTAATTATTAGTCTTTTGAGTTTTCTTTCTTTCTTTCTTTCTTTCTTGCAATTAACTTTGTTTAATTATGATTCACTTTTATTTTAGGCGATGATCGATTTGAAGCTTACTTGCCTTTATTGCTTTCTTATCAAGAATTTGACGTTGGAGTTATTAATTATGGATGCTTTGTCTCAATTGAAGCACAAAATTTCAAACATTGCTTATCGATGCTTGATAATAATACTCATG

mRNA sequence

ATGATTTTCTCTCTTCGTAACGACATAGATCAACTTCTTAACCTATCCTTTTTCACTTCTTCTGGCGATGATCGATTTGAAGCTTACTTGCCTTTATTGCTTTCTTATCAAGAATTTGACGTTGGAGTTATTAATTATGGATGCTTTGTCTCAATTGAAGCACAAAATTTCAAACATTGCTTATCGATGCTTGATAATAATACTCATG

Coding sequence (CDS)

ATGATTTTCTCTCTTCGTAACGACATAGATCAACTTCTTAACCTATCCTTTTTCACTTCTTCTGGCGATGATCGATTTGAAGCTTACTTGCCTTTATTGCTTTCTTATCAAGAATTTGACGTTGGAGTTATTAATTATGGATGCTTTGTCTCAATTGAAGCACAAAATTTCAAACATTGCTTATCGATGCTTGATAATAATACTCATG

Protein sequence

MIFSLRNDIDQLLNLSFFTSSGDDRFEAYLPLLLSYQEFDVGVINYGCFVSIEAQNFKHCLSMLDNNTHX
Homology
[Close]
BLAST of Chy11G202080 vs. ExPASy TrEMBL
Match: A0A6J1H7T7 (uncharacterized protein LOC111460352 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460352 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 13  LNLSFFTSSGDDRFEAYLPLLLSYQEFDVGVINYGCFVSIEAQNFKHCLSMLDNNTH 70
           L   F + S  D  EA+LPLLL+++E DVGVINYG FVSI+ + F    + L++ TH
Sbjct: 105 LKFIFSSPSRCDGCEAFLPLLLAHEEVDVGVINYGIFVSIDLRKFTLFGTFLNDATH 161

[Close]
BLAST of Chy11G202080 vs. NCBI nr
Match: XP_023549339.1 (uncharacterized protein LOC111807722 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 7.72e-08
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 13  LNLSFFTSSGDDRFEAYLPLLLSYQEFDVGVINYGCFVSIEAQNFKHCLSMLDNNTH 69
           L   FF+ S  D  EA LPLLL+++EFDVGVINYG FVSI+ + F      L++ TH
Sbjct: 77  LKFIFFSPSRCDGCEALLPLLLAHEEFDVGVINYGIFVSIDLRKFTLFGMFLNDATH 133

[Close]
BLAST of Chy11G202080 vs. NCBI nr
Match: XP_023549340.1 (uncharacterized protein LOC111807722 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.5 bits (127), Expect = 1.16e-06
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 24 DRFEAYLPLLLSYQEFDVGVINYGCFVSIEAQNFKHCLSMLDNNTH 69
          D  EA LPLLL+++EFDVGVINYG FVSI+ + F      L++ TH
Sbjct: 10 DGCEALLPLLLAHEEFDVGVINYGIFVSIDLRKFTLFGMFLNDATH 55

[Close]
BLAST of Chy11G202080 vs. NCBI nr
Match: XP_022959355.1 (uncharacterized protein LOC111460352 isoform X2 [Cucurbita moschata])

HSP 1 Score: 53.1 bits (126), Expect = 1.63e-06
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 24 DRFEAYLPLLLSYQEFDVGVINYGCFVSIEAQNFKHCLSMLDNNTH 69
          D  EA+LPLLL+++E DVGVINYG FVSI+ + F    + L++ TH
Sbjct: 10 DGCEAFLPLLLAHEEVDVGVINYGIFVSIDLRKFTLFGTFLNDATH 55

[Close]
BLAST of Chy11G202080 vs. NCBI nr
Match: XP_022959354.1 (uncharacterized protein LOC111460352 isoform X1 [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 1.77e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 13  LNLSFFTSSGDDRFEAYLPLLLSYQEFDVGVINYGCFVSIEAQNFKHCLSMLDNNTH 69
           L   F + S  D  EA+LPLLL+++E DVGVINYG FVSI+ + F    + L++ TH
Sbjct: 105 LKFIFSSPSRCDGCEAFLPLLLAHEEVDVGVINYGIFVSIDLRKFTLFGTFLNDATH 161

The following BLAST results are available for this feature:
BLAST of Chy11G202080 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G202080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H7T74.1e-0449.12uncharacterized protein LOC111460352 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Chy11G202080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023549339.17.72e-0852.63uncharacterized protein LOC111807722 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023549340.11.16e-0656.52uncharacterized protein LOC111807722 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022959355.11.63e-0654.35uncharacterized protein LOC111460352 isoform X2 [Cucurbita moschata][more]
XP_022959354.11.77e-0649.12uncharacterized protein LOC111460352 isoform X1 [Cucurbita moschata][more]
BLAST of Chy11G202080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G202080.1Chy11G202080.1mRNA