Chy11G198850 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G198850
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Integrase
Location	chrH11: 19276533 .. 19276958 (+)
RNA-Seq Expression	Chy11G198850
Synteny	Chy11G198850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAAGACGATGTTGTAGAGCCAACATGGTATCTTGATAGTGGTTGTAGTAACCACATGATAGGAAATAGAAGTATATTTGTTACTTTGGATGAACCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACAAAGAAAGGCACAAAACGAGTTATAAATGTGTTCTATGTTCCAAGTCTAAACCATAATCTTTTGAGTATTTGACAACTGCTTCAGCGAGGTTTAAAAGTTTTATTTGAAGGTGACATATGTGTAATCAAAAGATCAGACCAGTGTTCTTATTGCCAAGGTAAAAATGACTGCTAATAAGATGTTTCCTCTTAACTTTACATATGGTCAAATATCTTGCTTTAGCAGCATATTGAAGGATCCATCCTGGCTTTG

mRNA sequence

ATCCAAGACGATGTTGTAGAGCCAACATGGTATCTTGATAGTGGTTGTAGTAACCACATGATAGGAAATAGAAGTATATTTGTTACTTTGGATGAACCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACAAAGAAAGGCACAAAACGAGTTATAAATGTGTTCTATGTTCCAAGTCTAAACCATAATCTTTTGAGTATTTGACAACTGCTTCAGCGAGGTTTAAAAGTTTTATTTGAAGGTGACATATGTGTAATCAAAAGATCAGACCAGTGTTCTTATTGCCAAGGTAAAAATGACTGCTAATAAGATGTTTCCTCTTAACTTTACATATGGTCAAATATCTTGCTTTAGCAGCATATTGAAGGATCCATCCTGGCTTTG

Coding sequence (CDS)

ATCCAAGACGATGTTGTAGAGCCAACATGGTATCTTGATAGTGGTTGTAGTAACCACATGATAGGAAATAGAAGTATATTTGTTACTTTGGATGAACCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACAAAGAAAGGCACAAAACGAGTTATAAATGTGTTCTATGTTCCAAGTCTAAACCATAATCTTTTGAGTATTTGACAACTGCTTCAGCGAGGTTTAAAAGTTTTATTTGAAGGTGACATATGTGTAATCAAAAGATCAGACCAGTGTTCTTATTGCCAAGGTAAAAATGACTGCTAATAAGATGTTTCCTCTTAACTTTACATATGGTCAAATATCTTGCTTTAGCAGCATATTGAAGGATCCATCCTGGCTTTG

Protein sequence

IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIKRSDQCSYCQGKNDC**DVSS*LYIWSNILL*QHIEGSILAL

Homology

[Close]

BLAST of Chy11G198850 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 23/72 (31.94%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 10  WYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVINVF 69
           W  D+GC++HM  +RSIF +     + +   G    + + G G + +    GT ++ +V 
Sbjct: 79  WIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTVNI----GTVQLHDVS 138

Query: 70  YVPSLNHNLLSI 82
           YVP L  NL+S+
Sbjct: 139 YVPDLPVNLISV 146

[Close]

BLAST of Chy11G198850 vs. ExPASy TrEMBL
Match: A0A5A7TED4 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001410 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.9e-47
Identity = 103/142 (72.54%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 330 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 389

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIKRSDQCSYCQGKNDC**DVS 120
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK  DQ               
Sbjct: 390 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK--DQV-------------- 448

Query: 121 S*LYIWSNILL*QHIEGSILAL 143
                   +L+ +HIEGSILAL
Sbjct: 450 -------GVLIAKHIEGSILAL 448

[Close]

BLAST of Chy11G198850 vs. ExPASy TrEMBL
Match: A0A5D3CLV1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 330 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 389

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIK 102
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK
Sbjct: 390 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK 430

[Close]

BLAST of Chy11G198850 vs. ExPASy TrEMBL
Match: A0A5D3BQ81 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00890 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 330 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 389

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIK 102
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK
Sbjct: 390 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK 430

[Close]

BLAST of Chy11G198850 vs. ExPASy TrEMBL
Match: A0A5D3E3T2 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00030 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 330 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 389

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIK 102
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK
Sbjct: 390 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK 430

[Close]

BLAST of Chy11G198850 vs. ExPASy TrEMBL
Match: A0A5A7UZJ8 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001310 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 330 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 389

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIK 102
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK
Sbjct: 390 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK 430

[Close]

BLAST of Chy11G198850 vs. NCBI nr
Match: KAA0041660.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 7.30e-57
Identity = 103/142 (72.54%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 330 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 389

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIKRSDQCSYCQGKNDC**DVS 120
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK  DQ               
Sbjct: 390 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK--DQV-------------- 448

Query: 121 S*LYIWSNILL*QHIEGSILAL 142
                   +L+ +HIEGSILAL
Sbjct: 450 -------GVLIAKHIEGSILAL 448

[Close]

BLAST of Chy11G198850 vs. NCBI nr
Match: XP_008462674.1 (PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo])

HSP 1 Score: 179 bits (455), Expect = 4.22e-55
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+V+EPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNT LQVKGQ DILVKTKK
Sbjct: 21  VQDNVLEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTILQVKGQCDILVKTKK 80

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIKRSDQCSYCQGK 112
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK  DQ S    K
Sbjct: 81  GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK--DQPSVLIAK 130

[Close]

BLAST of Chy11G198850 vs. NCBI nr
Match: TYK05177.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (473), Expect = 1.28e-53
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQSEVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 262 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 321

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIK 101
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK
Sbjct: 322 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK 362

[Close]

BLAST of Chy11G198850 vs. NCBI nr
Match: KAA0063962.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 6.92e-53
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM GNRSIFVTLDE FQ+EVKTGDNTRLQVKGQGDILVKTKK
Sbjct: 262 VQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQNEVKTGDNTRLQVKGQGDILVKTKK 321

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIK 101
           GTKRV NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK
Sbjct: 322 GTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK 362

[Close]

BLAST of Chy11G198850 vs. NCBI nr
Match: TYK21845.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 9.01e-53
Identity = 87/101 (86.14%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   IQDDVVEPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKK 60
           +QD+VVEPTWYLDSGCSNHM  NRSIFVTLDE FQSE+KT DNTRLQVKGQGDILVKTKK
Sbjct: 115 VQDNVVEPTWYLDSGCSNHMTENRSIFVTLDESFQSELKTCDNTRLQVKGQGDILVKTKK 174

Query: 61  GTKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFEGDICVIK 101
           GTK+V NVFYVP L HNLLSI QLLQRGLKV FEGDIC IK
Sbjct: 175 GTKQVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIK 215

[Close]

BLAST of Chy11G198850 vs. TAIR 10
Match: AT3G20980.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-10
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 7   EPTWYLDSGCSNHMIGNRSIFVTLDEPFQSEVK--TGD---NTRLQVKGQGDILVKTKKG 66
           E  W + S  SNHM  +   F TLD   + +VK  +GD    T   V+G GD+   T +G
Sbjct: 266 ENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEG 325

Query: 67  TKRVINVFYVPSLNHNLLSI*QLLQRGLKVLFE 95
            K + NV YVP +  N LS+ QL + G +V  E
Sbjct: 326 NKTIKNVLYVPGIEGNALSVSQLKRNGFEVSME 358

[Close]

BLAST of Chy11G198850 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-09
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 10  WYLDSGCSNHMIGNRSIFVTLDEPFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVI-NV 69
           W +      +M      F TLD  F++ V T D T L V+G+GD+ ++ K+G K+ I NV
Sbjct: 280 WIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNV 339

Query: 70  FYVPSLNHNLLSI*QLLQR--GLKVLFEGDICVIKRSD 105
            +VP LN N+LS  +++ +   +    +G+  V  R +
Sbjct: 340 IFVPGLNRNVLSFGKMVSKRYSISTGMQGECIVCDRGE 377

The following BLAST results are available for this feature:

BLAST of Chy11G198850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25601	1.6e-04	31.94	Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Chy11G198850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TED4	7.9e-47	72.54	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001410 PE=4...	[more]
A0A5D3CLV1	1.3e-44	90.10	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4...	[more]
A0A5D3BQ81	1.3e-44	90.10	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00890 PE=4...	[more]
A0A5D3E3T2	1.3e-44	90.10	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00030 PE=4...	[more]
A0A5A7UZJ8	1.3e-44	90.10	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001310 PE=4...	[more]

BLAST of Chy11G198850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041660.1	7.30e-57	72.54	integrase [Cucumis melo var. makuwa]	[more]
XP_008462674.1	4.22e-55	82.14	PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo]	[more]
TYK05177.1	1.28e-53	90.10	integrase [Cucumis melo var. makuwa]	[more]
KAA0063962.1	6.92e-53	89.11	integrase [Cucumis melo var. makuwa]	[more]
TYK21845.1	9.01e-53	86.14	integrase [Cucumis melo var. makuwa]	[more]

BLAST of Chy11G198850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20980.1	7.6e-10	38.71	Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	3.8e-09	32.65	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34676:SF9	SUBFAMILY NOT NAMED	coord: 9..99
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 9..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G198850.1	Chy11G198850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding