Chy11G195070 (gene) Cucumber (hystrix) v1

Overview
NameChy11G195070
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 12867502 .. 12869002 (+)
RNA-Seq ExpressionChy11G195070
SyntenyChy11G195070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTTTGCGTAAGCTTAACTCTGGTAAATCTAGAAGTAAAAAATGGATTCAAGAAGAGCATATTCGCACATCAGTCGGTAGTTGTCCACAAGGGTAATCACTAGAACCATACACTTTCATGTTTATTTTGGATCTAAACTAATCAGATCCAATATATTTTGTAGGTTGCCCTTGCTCTCGAAGTTCCCAAAAGTTCCATCACACCTTCCTTAAGATGGATAGCTCACGGACTTCTCCAGATGTGGCCACTTATTCTGGTTACATGATCAATGGTTATTACTACCACACAAAAAGCCTTGATGATATTAGGAGAGTTCAAAATAGTGGAGTTAGTATAACAGCGAGTACAATGCAAGTGTCTAGTTCTAAAGACAAAAACCCAGTCATGTCAGATATGACATTTTATGGCATAATACAAGAGATATAGGAGATTGATTACCATCAATTATCTTTTGTTTTATTTAAGTGTGATTGGGTTGATACTTTGAAGTGGAGTCAAAGTGGACGAGCTTGGTTTTACATTGTGGATATCAAACGTATTGGACATAAATCAGACCCATTCATTTTAGCATCCCAAGCAAAACAAGTATTCTACGTGAATGATTCTTCAAATCCTGAATGGTTAGTGGTTTTAACATCTCCACAAAGAACTATTGAAGAAGATTTCTTTGAAGATGAAATAGGAGATATGCTTCTAGAGTGTGGTTATGGAGTTGTTCAAAAGATGCCCAATGTTCATACACCTCACGAGATTGATGCTTCATCATATATTAGACATGATTGTGAAGGTAGATGGGTTGATAAGTAATGGTTGTATGAATGCTTTATTAAGGTATGTCATTTACTTTCCTTTATAATAGATTTATGTTTAGAGTTTGTAATTAGTAAGCTTATGATATGTCATTACTGAAGGGATAAAATCCCTATGGCAGCGGAAGAATTTAAAGAATAGTTACTCCAATTAATTTGGGAATAATAAAATACCAATACATTGGCAAAATTTTAGAATCAAAATTCTAACACTAAGCATGCTTTTAAATTAAAGGATACAGAGAACTTACTTTCGATGACGTCTCTGAATCTACATATCACCGAATTGGGGACACCACCCGTCAGAGACCTTCCTATCCTCTAGGATGAGATTGGTTTGTGGGAACCAATTGGGATGGAAAAAATGTTTAGAGAAATTCTTTTCTTTTTGCAGAGAGAAAAAACCTTGGTTTTTTCCTTGATGAATTTTCGGTTAAAGAAAACTGTTTTCTTCTAGATATTTATAACTCGATTTCCTTCTTGGAATAGGAAAAGGAGTAAGAGAGAATCATGAGATTCTATTATCAAATCTACTAATTAATTAACAATTATTCAATTAATTAATAATTAATTAAATCATATTTAATTAATATTTCATTCAAATCTTATTTGAATAAATATCTCTCCAATATCTTATAGATTTATATTAATATAATTAATTAAATCATATTTAATTAATATTTCAT

mRNA sequence

ATGGAGAGTTTGCGTAAGCTTAACTCTGGTAAATCTAGAAGTAAAAAATGGATTCAAGAAGAGCATATTCGCACATCAGTCGGTAGTTGTCCACAAGGGTTGCCCTTGCTCTCGAAGTTCCCAAAAGTTCCATCACACCTTCCTTAAGATGGATAGCTCACGGACTTCTCCAGATGTGGCCACTTATTCTGGTTACATGATCAATGGTTATTACTACCACACAAAAAGCCTTGATGATATTAGGAGAGTTCAAAATAGTGGAGTTAGTATAACAGCGAGTACAATGCAAGTGTCTAGTTCTAAAGACAAAAACCCAGTCATGTCAGATATGACATTTTATGGCTGTGATTGGGTTGATACTTTGAAGTGGAGTCAAAGTGGACGAGCTTGGTTTTACATTGTGGATATCAAACGTATTGGACATAAATTTATATTAATATAATTAATTAAATCATATTTAATTAATATTTCAT

Coding sequence (CDS)

ATGGAGAGTTTGCGTAAGCTTAACTCTGGTAAATCTAGAAGTAAAAAATGGATTCAAGAAGAGCATATTCGCACATCAGTCGGTAGTTGTCCACAAGGGTTGCCCTTGCTCTCGAAGTTCCCAAAAGTTCCATCACACCTTCCTTAAGATGGATAGCTCACGGACTTCTCCAGATGTGGCCACTTATTCTGGTTACATGATCAATGGTTATTACTACCACACAAAAAGCCTTGATGATATTAGGAGAGTTCAAAATAGTGGAGTTAGTATAACAGCGAGTACAATGCAAGTGTCTAGTTCTAAAGACAAAAACCCAGTCATGTCAGATATGACATTTTATGGCTGTGATTGGGTTGATACTTTGAAGTGGAGTCAAAGTGGACGAGCTTGGTTTTACATTGTGGATATCAAACGTATTGGACATAAATTTATATTAATATAATTAATTAAATCATATTTAATTAATATTTCAT

Protein sequence

MESLRKLNSGKSRSKKWIQEEHIRTSVGSCPQGLPLLSKFPKVPSHLP*DG*LTDFSRCGHLFWLHDQWLLLPHKKP**Y*ESSK*WS*YNSEYNASV*F*RQKPSHVRYDILWL*LG*YFEVESKWTSLVLHCGYQTYWT*IYINIIN*IIFN*YFX
Homology
[Close]
BLAST of Chy11G195070 vs. NCBI nr
Match: KAA0047122.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.45e-05
Identity = 45/141 (31.91%), Postives = 62/141 (43.97%), Query Frame = 0 

Query: 1   MESLRKLNSGKSRSKKWIQEEHIRTSVGSCPQGLPLLSKFPKVPSHLP*DG*---LTDFS 60
           MESLRKLNSGK+RSKKWIQEEH R    S  + L     +    S +  D     + D  
Sbjct: 355 MESLRKLNSGKARSKKWIQEEHNR----SFSRWLSTRCDWVDNRSGVKVDELGFTIIDLK 414

Query: 61  RCGHLFWLHDQWLLLPHKKP**Y*ESSK*WS*YNSEYNASV*F*RQKPSHVRYDILWL*L 120
           R GH     D ++L    K   Y + S      N E++  +         +  D      
Sbjct: 415 RIGH---KSDSFILATQAKQVFYVQDSA-----NPEWSVVL---TSPQRTIEED------ 470

Query: 121 G*YFEVESKWTSLVLHCGYQT 138
             +FE E  +  ++  CGY+T
Sbjct: 475 --FFEDEKGY--MLQECGYET 470

[Close]
BLAST of Chy11G195070 vs. NCBI nr
Match: KAA0041989.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 5.80e-05
Identity = 44/138 (31.88%), Postives = 60/138 (43.48%), Query Frame = 0 

Query: 1   MESLRKLNSGKSRSKKWIQEEHIRTSVGSCPQGLPLLSKFPKVPSHLP*DG*LTDFSRCG 60
           MESLRKLNSGK+RSKKWIQEEH R    S  + + L  +   V         + D  R G
Sbjct: 294 MESLRKLNSGKARSKKWIQEEHNR----SFNRVIGLTIEVESVDEL---GFTIVDLKRIG 353

Query: 61  HLFWLHDQWLLLPHKKP**Y*ESSK*WS*YNSEYNASV*F*RQKPSHVRYDILWL*LG*Y 120
           H     D ++L+   K   Y + S      N E++            +  D        +
Sbjct: 354 H---KSDSFILVTQAKQVFYVQDST-----NPEWSVVS---TSPQRTIEED--------F 403

Query: 121 FEVESKWTSLVLHCGYQT 138
           FE E     ++  CGY+T
Sbjct: 414 FEDEIG--DMLQECGYET 403

[Close]
BLAST of Chy11G195070 vs. NCBI nr
Match: TYK11037.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 2.03e-04
Identity = 48/163 (29.45%), Postives = 64/163 (39.26%), Query Frame = 0 

Query: 1   MESLRKLNSGKSRSKKWIQEEHIRTSVGSCPQGLPLLSKFPK---VPS-----HLP*DG* 60
           MESLRKLNSGK+RSKKWIQEEH R+        + L  + PK    PS     H P    
Sbjct: 350 MESLRKLNSGKARSKKWIQEEHNRSFSRWLSTRVELALEVPKNSITPSLRWIAHGPSPDC 409

Query: 61  -----------------LTDFSRCGHLFWLHDQWLLLPHKKP**Y*ESSK*WS*YNSEYN 120
                            + D  R GH     D ++L    K   Y + S      N E++
Sbjct: 410 DWVDNKSGVKVDELGFTIVDLKRIGH---KSDSFILATQAKQVFYVQDST-----NPEWS 469

Query: 121 ASV*F*RQKPSHVRYDILWL*LG*YFEVESKWTSLVLHCGYQT 138
             +         +  D        +FE E     ++  CGY+T
Sbjct: 470 VVL---TSPQRTIEED--------FFEYEIG--DMLQECGYET 491

The following BLAST results are available for this feature:
BLAST of Chy11G195070 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G195070 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G195070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047122.14.45e-0531.91transposase [Cucumis melo var. makuwa][more]
KAA0041989.15.80e-0531.88transposase [Cucumis melo var. makuwa][more]
TYK11037.12.03e-0429.45transposase [Cucumis melo var. makuwa][more]
BLAST of Chy11G195070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G195070.1Chy11G195070.1mRNA