Chy11G193300 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G193300
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Mitochondrial transcription termination factor family protein
Location	chrH11: 10284699 .. 10285255 (+)
RNA-Seq Expression	Chy11G193300
Synteny	Chy11G193300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGAGTGCCTTGCCACTCTGGGTGGTCAGCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCTTTGCCCACGTTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGGTTGTGGACTTTCATGCTAGTTTTGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGTAAAATATCCATTTATTATGGGGTATAGTGTCGATTAAACGCTACGTCCCACATTAGAATTTTTAAATTCTATAGGTTTGAAGGATATAGATCTTCAAGCAATTGCAGTTGGCTATCCTGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGACACCCGATTTGATTTCCTGAAGAACTGCGGATTTCGAGATGCGCAGATTGCAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGCATTGCACATTCTATAGAACCTCAATTAATTTCTTGA

mRNA sequence

ATGGTCGAGTGCCTTGCCACTCTGGGTGGTCAGCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCTTTGCCCACGTTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGGTTGTGGACTTTCATGCTAGTTTTGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGATATAGATCTTCAAGCAATTGCAGTTGGCTATCCTGAGAACTGCGGATTTCGAGATGCGCAGATTGCAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGCATTGCACATTCTATAGAACCTCAATTAATTTCTTGA

Coding sequence (CDS)

ATGGTCGAGTGCCTTGCCACTCTGGGTGGTCAGCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCTTTGCCCACGTTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGGTTGTGGACTTTCATGCTAGTTTTGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGATATAGATCTTCAAGCAATTGCAGTTGGCTATCCTGAGAACTGCGGATTTCGAGATGCGCAGATTGCAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGCATTGCACATTCTATAGAACCTCAATTAATTTCTTGA

Protein sequence

MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVLDIDLQAIAVGYPENCGFRDAQIAALVAGYPPILIKSIAHSIEPQLIS*

Homology

[Close]

BLAST of Chy11G193300 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.0e-35
Identity = 82/184 (44.57%), Postives = 108/184 (58.70%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KLT +V F AS GLD+ G+IGKVL                            
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 -DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSI 138
            +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

[Close]

BLAST of Chy11G193300 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-05
Identity = 33/139 (23.74%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 5   LATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISY 64
           L TLG   +++A  I++FP +L +S + KL   + F     + E+ +G+++   P ++SY
Sbjct: 275 LETLGIDKNQWAKIISRFPAILTYSRQ-KLTSTVEFLSQTGLTEEQIGRILTRCPNIMSY 334

Query: 65  SIVPKLTEVVDFHASFGLDKQGLI-------GKVLDIDLQAIAVGYPENCGFRDAQIAAL 124
           S+  KL   +++  S  +D   L+       G  ++ +L+ +   + E  GF   +I  +
Sbjct: 335 SVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEK-GFGLDEIGIM 394

Query: 125 VAGYPPILIKSIAHSIEPQ 137
           ++ Y  +   S+  ++ P+
Sbjct: 395 ISRYGALYTFSLKENVMPK 411

[Close]

BLAST of Chy11G193300 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.1e-04
Identity = 31/113 (27.43%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 23  PYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGL 82
           P +    +E  + P++ F Q + IP + +G M++  P L++ S+  K+  VV F  +   
Sbjct: 413 PILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAG 472

Query: 83  DKQGLIGKVLDID--LQAIAVG--------YPENCGFRDAQIAALVAGYPPIL 126
             Q  IGKV+ +D  L   ++G        Y  + G R  Q+  ++A +P +L
Sbjct: 473 VTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLL 525

[Close]

BLAST of Chy11G193300 vs. ExPASy TrEMBL
Match: A0A0A0KE07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117190 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.4e-58
Identity = 125/183 (68.31%), Postives = 130/183 (71.04%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECLATLG  PHEFASA+AQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR
Sbjct: 1   MVECLATLGSHPHEFASAVAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LI YSIVPKLTE+VDFHA+FGLDKQGLI KVL                            
Sbjct: 61  LIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKFFKSIGLK 120

Query: 121 DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIE 138
           D+DLQAIA GYPE                  NCGFRDAQI ALVAGYPPILIKSI HSIE
Sbjct: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180

[Close]

BLAST of Chy11G193300 vs. ExPASy TrEMBL
Match: A0A6P5MY98 (transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X1 OS=Arachis duranensis OX=130453 GN=LOC107469194 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 96/183 (52.46%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPR
Sbjct: 83  MVECLRTLGTKPHEVTSAIAKFPHILSHSVEEKLCPLLAFFQALGIPEKQLGKVILLNPR 142

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KL E+VDF AS GL+K G+IGKV+                            
Sbjct: 143 LISYSIETKLKEIVDFLASLGLNKDGMIGKVIVKDPFIMGYSVDKRLRPTSEFLRSIGLS 202

Query: 121 DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIE 138
           ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+E
Sbjct: 203 ELDLQAVAVNFPAILSRDAKKVLMPNYDFLKKCGFQDKQIAALVVGFPPILIKSIQNSLE 262

[Close]

BLAST of Chy11G193300 vs. ExPASy TrEMBL
Match: A0A6P5MUG8 (transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 OS=Arachis duranensis OX=130453 GN=LOC107469194 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 96/183 (52.46%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPR
Sbjct: 83  MVECLRTLGTKPHEVTSAIAKFPHILSHSVEEKLCPLLAFFQALGIPEKQLGKVILLNPR 142

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KL E+VDF AS GL+K G+IGKV+                            
Sbjct: 143 LISYSIETKLKEIVDFLASLGLNKDGMIGKVIVKDPFIMGYSVDKRLRPTSEFLRSIGLS 202

Query: 121 DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIE 138
           ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+E
Sbjct: 203 ELDLQAVAVNFPAILSRDAKKVLMPNYDFLKKCGFQDKQIAALVVGFPPILIKSIQNSLE 262

[Close]

BLAST of Chy11G193300 vs. ExPASy TrEMBL
Match: A0A445B8S2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g050194 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 96/183 (52.46%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPR
Sbjct: 83  MVECLRTLGTKPHEVTSAIAKFPHILSHSVEEKLCPLLAFFQALGIPEKQLGKVILLNPR 142

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KL E+VDF AS GL+K G+IGKV+                            
Sbjct: 143 LISYSIETKLKEIVDFLASLGLNKDGMIGKVIVKDPFIMGYSVDKRLRPTSEFLRSIGLS 202

Query: 121 DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIE 138
           ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+E
Sbjct: 203 ELDLQAVAVNFPAILSRDAKKVLMPNYDFLKKCGFQDKQIAALVVGFPPILIKSIQNSLE 262

[Close]

BLAST of Chy11G193300 vs. ExPASy TrEMBL
Match: A0A6P6AG45 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Durio zibethinus OX=66656 GN=LOC111309168 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-40
Identity = 95/183 (51.91%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECLATLG + HE ASAIA+FP+++ HS+E+KLCP LAFFQAL +PEK LGKMILLNPR
Sbjct: 83  MVECLATLGTKRHEVASAIARFPHIISHSVEEKLCPLLAFFQALGVPEKQLGKMILLNPR 142

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KLTE+VDF A+ GL ++G+IGK+L                            
Sbjct: 143 LISYSIESKLTEIVDFLATLGLTREGMIGKILAKYPFIMGYSVEKRLHPTSEFLKSVGLS 202

Query: 121 DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIE 138
           + DLQ +A+ +PE                   CGF D QI ALV GYPPILIKSI HS+E
Sbjct: 203 ERDLQTVAMNFPEVLCRDVSKILRTNFAYLKRCGFGDRQITALVTGYPPILIKSIKHSLE 262

[Close]

BLAST of Chy11G193300 vs. NCBI nr
Match: KAE8646817.1 (hypothetical protein Csa_005087 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 5.07e-75
Identity = 125/183 (68.31%), Postives = 130/183 (71.04%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECLATLG  PHEFASA+AQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR
Sbjct: 14  MVECLATLGSHPHEFASAVAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 73

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LI YSIVPKLTE+VDFHA+FGLDKQGLI KVL                            
Sbjct: 74  LIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKFFKSIGLK 133

Query: 121 DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIE 137
           D+DLQAIA GYPE                  NCGFRDAQI ALVAGYPPILIKSI HSIE
Sbjct: 134 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 193

[Close]

BLAST of Chy11G193300 vs. NCBI nr
Match: XP_031744171.1 (LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 2.60e-71
Identity = 125/183 (68.31%), Postives = 130/183 (71.04%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECLATLG  PHEFASA+AQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR
Sbjct: 247 MVECLATLGSHPHEFASAVAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 306

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LI YSIVPKLTE+VDFHA+FGLDKQGLI KVL                            
Sbjct: 307 LIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKFFKSIGLK 366

Query: 121 DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIE 137
           D+DLQAIA GYPE                  NCGFRDAQI ALVAGYPPILIKSI HSIE
Sbjct: 367 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 426

[Close]

BLAST of Chy11G193300 vs. NCBI nr
Match: XP_020968925.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis ipaensis] >XP_020968926.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis ipaensis] >XP_020968927.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis ipaensis] >XP_020968928.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis ipaensis] >XP_025622764.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis hypogaea] >XP_025683066.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis hypogaea] >XP_025683067.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis hypogaea] >XP_025683068.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis hypogaea] >XP_025683069.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis hypogaea])

HSP 1 Score: 174 bits (442), Expect = 2.95e-51
Identity = 96/183 (52.46%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPR
Sbjct: 83  MVECLRTLGTKPHEVTSAIAKFPHILSHSVEEKLCPLLAFFQALGIPEKQLGKVILLNPR 142

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KL E+VDF AS GL+K G+IGKV+                            
Sbjct: 143 LISYSIETKLKEIVDFLASLGLNKDGMIGKVIVKDPFIMGYSVDKRLRPTSEFLRSIGLS 202

Query: 121 DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIE 137
           ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+E
Sbjct: 203 ELDLQAVAVNFPAILSRDAKKVLMPNYDFLKKCGFQDKQIAALVVGFPPILIKSIQNSLE 262

[Close]

BLAST of Chy11G193300 vs. NCBI nr
Match: XP_020988432.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis duranensis] >XP_020988433.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis duranensis] >XP_020988434.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis duranensis] >XP_020988435.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis duranensis])

HSP 1 Score: 174 bits (442), Expect = 2.95e-51
Identity = 96/183 (52.46%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPR
Sbjct: 83  MVECLRTLGTKPHEVTSAIAKFPHILSHSVEEKLCPLLAFFQALGIPEKQLGKVILLNPR 142

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KL E+VDF AS GL+K G+IGKV+                            
Sbjct: 143 LISYSIETKLKEIVDFLASLGLNKDGMIGKVIVKDPFIMGYSVDKRLRPTSEFLRSIGLS 202

Query: 121 DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIE 137
           ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+E
Sbjct: 203 ELDLQAVAVNFPAILSRDAKKVLMPNYDFLKKCGFQDKQIAALVVGFPPILIKSIQNSLE 262

[Close]

BLAST of Chy11G193300 vs. NCBI nr
Match: XP_015944058.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X1 [Arachis duranensis] >XP_020988431.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X1 [Arachis duranensis])

HSP 1 Score: 174 bits (442), Expect = 8.31e-51
Identity = 96/183 (52.46%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPR
Sbjct: 83  MVECLRTLGTKPHEVTSAIAKFPHILSHSVEEKLCPLLAFFQALGIPEKQLGKVILLNPR 142

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KL E+VDF AS GL+K G+IGKV+                            
Sbjct: 143 LISYSIETKLKEIVDFLASLGLNKDGMIGKVIVKDPFIMGYSVDKRLRPTSEFLRSIGLS 202

Query: 121 DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIE 137
           ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+E
Sbjct: 203 ELDLQAVAVNFPAILSRDAKKVLMPNYDFLKKCGFQDKQIAALVVGFPPILIKSIQNSLE 262

[Close]

BLAST of Chy11G193300 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 82/184 (44.57%), Postives = 108/184 (58.70%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KLT +V F AS GLD+ G+IGKVL                            
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 -DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSI 138
            +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

[Close]

BLAST of Chy11G193300 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 82/184 (44.57%), Postives = 108/184 (58.70%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KLT +V F AS GLD+ G+IGKVL                            
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 -DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSI 138
            +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

[Close]

BLAST of Chy11G193300 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 82/184 (44.57%), Postives = 108/184 (58.70%), Query Frame = 0


Query: 1   MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEVVDFHASFGLDKQGLIGKVL---------------------------- 120
           LISYSI  KLT +V F AS GLD+ G+IGKVL                            
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 -DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSI 138
            +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

[Close]

BLAST of Chy11G193300 vs. TAIR 10
Match: AT4G14605.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 33/139 (23.74%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 5   LATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISY 64
           L TLG   +++A  I++FP +L +S + KL   + F     + E+ +G+++   P ++SY
Sbjct: 275 LETLGIDKNQWAKIISRFPAILTYSRQ-KLTSTVEFLSQTGLTEEQIGRILTRCPNIMSY 334

Query: 65  SIVPKLTEVVDFHASFGLDKQGLI-------GKVLDIDLQAIAVGYPENCGFRDAQIAAL 124
           S+  KL   +++  S  +D   L+       G  ++ +L+ +   + E  GF   +I  +
Sbjct: 335 SVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEK-GFGLDEIGIM 394

Query: 125 VAGYPPILIKSIAHSIEPQ 137
           ++ Y  +   S+  ++ P+
Sbjct: 395 ISRYGALYTFSLKENVMPK 411

[Close]

BLAST of Chy11G193300 vs. TAIR 10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 31/113 (27.43%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 23  PYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGL 82
           P +    +E  + P++ F Q + IP + +G M++  P L++ S+  K+  VV F  +   
Sbjct: 413 PILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAG 472

Query: 83  DKQGLIGKVLDID--LQAIAVG--------YPENCGFRDAQIAALVAGYPPIL 126
             Q  IGKV+ +D  L   ++G        Y  + G R  Q+  ++A +P +L
Sbjct: 473 VTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLL 525

The following BLAST results are available for this feature:

BLAST of Chy11G193300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	5.0e-35	44.57	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4JVI3	1.4e-05	23.74	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	2.1e-04	27.43	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of Chy11G193300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE07	4.4e-58	68.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117190 PE=3 SV=1	[more]
A0A6P5MY98	1.1e-40	52.46	transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X1 ...	[more]
A0A6P5MUG8	1.1e-40	52.46	transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 ...	[more]
A0A445B8S2	1.1e-40	52.46	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g050194 PE=3 SV=1	[more]
A0A6P6AG45	1.8e-40	51.91	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Durio zi...	[more]

BLAST of Chy11G193300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646817.1	5.07e-75	68.31	hypothetical protein Csa_005087 [Cucumis sativus]	[more]
XP_031744171.1	2.60e-71	68.31	LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mito...	[more]
XP_020968925.1	2.95e-51	52.46	transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 ...	[more]
XP_020988432.1	2.95e-51	52.46	transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 ...	[more]
XP_015944058.1	8.31e-51	52.46	transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X1 ...	[more]

BLAST of Chy11G193300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	3.6e-36	44.57	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	3.6e-36	44.57	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	3.6e-36	44.57	Mitochondrial transcription termination factor family protein	[more]
AT4G14605.1	1.0e-06	23.74	Mitochondrial transcription termination factor family protein	[more]
AT2G21710.1	1.5e-05	27.43	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 16..47 e-value: 0.037 score: 23.2 coord: 52..83 e-value: 0.24 score: 20.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 3..86 e-value: 6.9E-9 score: 35.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 103..136 coord: 1..95
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..137 e-value: 5.4E-15 score: 57.2
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 103..136 coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G193300.1	Chy11G193300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding