Chy11G192780 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G192780
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Thymidine kinase
Location	chrH11: 8857941 .. 8858972 (+)
RNA-Seq Expression	Chy11G192780
Synteny	Chy11G192780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCTGCAGGACTCCACTTCCGTTGACCTCCTCCTACGCCGACGCCATTAGAGCAGAATCTTCTCATCGCCTTGCCGGTGAAGTTCATGTCATCATCGGCCCTATGTTTGCTGGAAAAACCACGGCGCTCCTCCGCCGGATCAAATCCGAGAGCAACAGTGGAAGGTAAAGAAATTTGCGTTCTATGGGTTAATCCAAACTGTTATTCTTACGATCTGCAAACCGATCGAATTACTTTTTAGATTGATCGTCGATCGGATCTGTGTTTGATTTGTTATATGATGAGCAGGAACGTGGTGATGATCAAGTCAAGTAAAGACACAAGATACGCCGTAGATTCAGTAGTAACACATGATGGGGCCAAATTTCCATGCTGGGCACTGCCAGATCTTTCATCTTTTCGTCAGAAATTCGGAGAGGATGCTTATAATGAGGTATAATTTTTACAAATAATCATTCTATAGTATTAATTTGCGATATTCATCTTGTTCTGTATCTCACTCTTCAATAAAACCGGCAGCTGGATGTGATTGGTGTTGATGAAGCTCAATTTTTCGATGATCTCTATGATTTTTGCTGCAATGTTGCTGATAGAGATGGTAAAGTCATTGTTGTTGCTGGCTTAGATGGAGATTACTTAAGGTACTATTCAAAAATTTACGTAGTATCTTGCATCTGATGAGAAATCATTGGTTTATGCAAAAGTTTAATTTGGTGGGTGGGTTTTGTATGGTTTTATCTTTATTTTTTTGGCAGGAGGAGTTTTGGTTCAGTGCTTGACGTTGTTCCTCTGGCTGATACAGTAACAAAGTTGACAGCTAGATGTGAACTTTGTGGGAAAAGAGCTTTTTTTACATTGAGAAAAACAGAGGAGACAAAGACCGAACTTATCGCTGGGGCTGATGTCTATATGCCTGTGTGCCGCCATCACTATGCCATTGGACAAGAAGTCATACAATCTTCGAAGAATGTTATGGGATCTCGAACTATTACCTCAAATCTAGAGGCACTTTCTTCACTTATCTAA

mRNA sequence

ATGGACTCCTGCAGGACTCCACTTCCGTTGACCTCCTCCTACGCCGACGCCATTAGAGCAGAATCTTCTCATCGCCTTGCCGGTGAAGTTCATGTCATCATCGGCCCTATGTTTGCTGGAAAAACCACGGCGCTCCTCCGCCGGATCAAATCCGAGAGCAACAGTGGAAGGAACGTGGTGATGATCAAGTCAAGTAAAGACACAAGATACGCCGTAGATTCAGTAGTAACACATGATGGGGCCAAATTTCCATGCTGGGCACTGCCAGATCTTTCATCTTTTCGTCAGAAATTCGGAGAGGATGCTTATAATGAGCTGGATGTGATTGGTGTTGATGAAGCTCAATTTTTCGATGATCTCTATGATTTTTGCTGCAATGTTGCTGATAGAGATGGTAAAGTCATTGTTGTTGCTGGCTTAGATGGAGATTACTTAAGGAGGAGTTTTGGTTCAGTGCTTGACGTTGTTCCTCTGGCTGATACAGTAACAAAGTTGACAGCTAGATGTGAACTTTGTGGGAAAAGAGCTTTTTTTACATTGAGAAAAACAGAGGAGACAAAGACCGAACTTATCGCTGGGGCTGATGTCTATATGCCTGTGTGCCGCCATCACTATGCCATTGGACAAGAAGTCATACAATCTTCGAAGAATGTTATGGGATCTCGAACTATTACCTCAAATCTAGAGGCACTTTCTTCACTTATCTAA

Coding sequence (CDS)

ATGGACTCCTGCAGGACTCCACTTCCGTTGACCTCCTCCTACGCCGACGCCATTAGAGCAGAATCTTCTCATCGCCTTGCCGGTGAAGTTCATGTCATCATCGGCCCTATGTTTGCTGGAAAAACCACGGCGCTCCTCCGCCGGATCAAATCCGAGAGCAACAGTGGAAGGAACGTGGTGATGATCAAGTCAAGTAAAGACACAAGATACGCCGTAGATTCAGTAGTAACACATGATGGGGCCAAATTTCCATGCTGGGCACTGCCAGATCTTTCATCTTTTCGTCAGAAATTCGGAGAGGATGCTTATAATGAGCTGGATGTGATTGGTGTTGATGAAGCTCAATTTTTCGATGATCTCTATGATTTTTGCTGCAATGTTGCTGATAGAGATGGTAAAGTCATTGTTGTTGCTGGCTTAGATGGAGATTACTTAAGGAGGAGTTTTGGTTCAGTGCTTGACGTTGTTCCTCTGGCTGATACAGTAACAAAGTTGACAGCTAGATGTGAACTTTGTGGGAAAAGAGCTTTTTTTACATTGAGAAAAACAGAGGAGACAAAGACCGAACTTATCGCTGGGGCTGATGTCTATATGCCTGTGTGCCGCCATCACTATGCCATTGGACAAGAAGTCATACAATCTTCGAAGAATGTTATGGGATCTCGAACTATTACCTCAAATCTAGAGGCACTTTCTTCACTTATCTAA

Protein sequence

MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEALSSLI*

Homology

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BLAST of Chy11G192780 vs. ExPASy Swiss-Prot
Match: O81263 (Thymidine kinase OS=Oryza sativa subsp. japonica OX=39947 GN=TK PE=2 SV=2)

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-83
Identity = 147/220 (66.82%), Postives = 178/220 (80.91%), Query Frame = 0


Query: 7   PLPLTSSYADAIRA------ESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSG-RNV 66
           P+   ++ AD  R       E+     GE+HVI+GPMFAGKTTALLRR++ E+ +G RNV
Sbjct: 40  PVSAAAAAADKSRGGGGSAMEAQPSYPGEIHVIVGPMFAGKTTALLRRVQVEAGTGSRNV 99

Query: 67  VMIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDD 126
            +IKS KD RY +DSVVTHDG K PCWALP+LSSF+ K G +AY+++DVIG+DEAQFFDD
Sbjct: 100 ALIKSDKDNRYGLDSVVTHDGTKMPCWALPELSSFQDKLGTEAYDKVDVIGIDEAQFFDD 159

Query: 127 LYDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT 186
           L+DFCC  ADRDGK++VVAGLDGDY R  FGSVLD++PLAD+VTKLTARCELCG+RAFFT
Sbjct: 160 LHDFCCKAADRDGKIVVVAGLDGDYKRNKFGSVLDIIPLADSVTKLTARCELCGRRAFFT 219

Query: 187 LRKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVM 220
           LRKT ETKTELI GADVYMPVCR HY  GQ VI++++ V+
Sbjct: 220 LRKTRETKTELIGGADVYMPVCRQHYLDGQIVIEATRIVL 259

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BLAST of Chy11G192780 vs. ExPASy Swiss-Prot
Match: Q9S750 (Thymidine kinase a OS=Arabidopsis thaliana OX=3702 GN=TK1A PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.7e-83
Identity = 145/210 (69.05%), Postives = 174/210 (82.86%), Query Frame = 0


Query: 10  LTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTR 69
           L S       ++   R +G VHVI+GPMF+GK+T+LLRRIKSE + GR+V M+KSSKDTR
Sbjct: 13  LDSDVTGDFLSDLERRGSGAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTR 72

Query: 70  YAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVAD 129
           YA DSVVTHDG  FPCWALPDL SF +KFG DAYN+LDVIG+DEAQFF DLY+FCC VAD
Sbjct: 73  YAKDSVVTHDGIGFPCWALPDLMSFPEKFGLDAYNKLDVIGIDEAQFFGDLYEFCCKVAD 132

Query: 130 RDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKTE 189
            DGK+++VAGLDGDYLRRSFG+VLD++P+AD+VTKLTARCE+CG +AFFTLRK  +T+TE
Sbjct: 133 DDGKIVIVAGLDGDYLRRSFGAVLDIIPIADSVTKLTARCEVCGHKAFFTLRKNCDTRTE 192

Query: 190 LIAGADVYMPVCRHHYAIGQEVIQSSKNVM 220
           LI GADVYMPVCR HY     VI++SK V+
Sbjct: 193 LIGGADVYMPVCRKHYITNHIVIKASKKVL 222

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BLAST of Chy11G192780 vs. ExPASy Swiss-Prot
Match: F4KBF5 (Thymidine kinase b OS=Arabidopsis thaliana OX=3702 GN=TK1B PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.7e-78
Identity = 133/213 (62.44%), Postives = 175/213 (82.16%), Query Frame = 0


Query: 10  LTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTR 69
           +TSS +    + SS    GE+HV++GPMF+GKTT LLRRI +E  +G+ + +IKS+KDTR
Sbjct: 62  VTSSSSSQPLSSSS---PGEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTR 121

Query: 70  YAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAY-NELDVIGVDEAQFFDDLYDFCCNVA 129
           Y  +S+VTHDG K+PCW+LPDLSSF+++FG D Y N LDVIG+DEAQFF DLY+FC   A
Sbjct: 122 YCTESIVTHDGEKYPCWSLPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAA 181

Query: 130 DRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKT 189
           D++GK ++VAGLDGD++RR FGSVLD++P+ADTVTKLT+RCE+CGKRA FT+RKTEE +T
Sbjct: 182 DKEGKTVIVAGLDGDFMRRRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMRKTEEKET 241

Query: 190 ELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGS 222
           ELI GA+VYMPVCR HY  GQ V+++++ V+ S
Sbjct: 242 ELIGGAEVYMPVCRSHYVCGQNVLETARAVLDS 271

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BLAST of Chy11G192780 vs. ExPASy Swiss-Prot
Match: P23335 (Thymidine kinase OS=Swinepox virus (strain Kasza) OX=10277 GN=TK PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-35
Identity = 72/178 (40.45%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 28  GEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRYAVDSVVTHDGAKFPCWA 87
           G +H+I+GPMF+GK+T L+R +     +  N  +IK SKD RY  D+V THD       +
Sbjct: 4   GFIHLILGPMFSGKSTELIRLVNRYQIATYNCRVIKYSKDNRYGNDAVYTHDKCYISAVS 63

Query: 88  LPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADRDGKVIVVAGLDGDYLRR 147
              L   +     D  +++D++G+DE QFF+D+ +FC  +A++ GK+++VA LDG Y R+
Sbjct: 64  TDSLFDIK-----DTLDDVDIVGIDEGQFFNDIVEFCEYIANK-GKIVIVAALDGTYERK 123

Query: 148 SFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKTELIAGADVYMPVCRHHY 206
            FG++L+++PL++ VTKL A C +C + A F+ R ++E + ELI G + Y+ VCR  Y
Sbjct: 124 PFGNILNLIPLSEKVTKLNAICMICHRDASFSKRLSDEKEIELIGGKEKYLSVCRSCY 175

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BLAST of Chy11G192780 vs. ExPASy Swiss-Prot
Match: Q27564 (Thymidine kinase 1 OS=Dictyostelium discoideum OX=44689 GN=thyB PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.5e-34
Identity = 85/199 (42.71%), Postives = 119/199 (59.80%), Query Frame = 0


Query: 25  RLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRY--AVDS--VVTHDG 84
           ++AG++ VI GPMF+GKTT L+RRIK  + + +  ++IK SKDTRY   +D   +VTHD 
Sbjct: 5   QIAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTHDK 64

Query: 85  AK---FPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADRDGKVIVV 144
                FPC  L D+    Q +        DVIG+DE QFF D+  F  ++A++ GK +++
Sbjct: 65  QNYQAFPCSILEDVKEQAQNY--------DVIGIDEGQFFPDVVQFSEDLANQ-GKTVII 124

Query: 145 AGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKTELIAGADVY 204
           A LDG + R+ F SV+D+V  A+ +TKLTA C +C   A F+ R  E    ELI G D Y
Sbjct: 125 AALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKY 184

Query: 205 MPVCRHHYAIGQEVIQSSK 217
           + VCR  Y   Q    S+K
Sbjct: 185 ISVCRGCYNSDQNEGNSTK 194

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BLAST of Chy11G192780 vs. ExPASy TrEMBL
Match: A0A0A0KAS7 (Thymidine kinase OS=Cucumis sativus OX=3659 GN=Csa_6G110310 PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.0e-123
Identity = 220/231 (95.24%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+SCRT LP TSSYAD +R ESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MESCRTSLPFTSSYADTVRPESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDG KFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGVKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVADRDGK+IVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEAL 232
           RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKN MGSRTI SNLEAL
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNAMGSRTIASNLEAL 231

[Close]

BLAST of Chy11G192780 vs. ExPASy TrEMBL
Match: A0A5D3CJB6 (Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00640 PE=3 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.8e-121
Identity = 222/235 (94.47%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+SCR+ L LTSS ADAIR ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSGRNVV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAVDSVVTHDGAKFPCWALP LSSFRQKFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVADRDGK+IVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEALSSLI 236
           RKTEETKTELIAGADVYMPVCRHHYA GQEVIQSSKNVMGSRTI SNLEAL SLI
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTIASNLEALPSLI 235

[Close]

BLAST of Chy11G192780 vs. ExPASy TrEMBL
Match: A0A1S3CKW8 (Thymidine kinase OS=Cucumis melo OX=3656 GN=LOC103502126 PE=3 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.8e-121
Identity = 222/235 (94.47%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+SCR+ L LTSS ADAIR ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSGRNVV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAVDSVVTHDGAKFPCWALP LSSFRQKFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVADRDGK+IVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEALSSLI 236
           RKTEETKTELIAGADVYMPVCRHHYA GQEVIQSSKNVMGSRTI SNLEAL SLI
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTIASNLEALPSLI 235

[Close]

BLAST of Chy11G192780 vs. ExPASy TrEMBL
Match: A0A5A7TX27 (Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005900 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.8e-120
Identity = 223/236 (94.49%), Postives = 226/236 (95.76%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSG-RNV 60
           M+SCR+ L LTSS ADAIR ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSG RNV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGNRNV 60

Query: 61  VMIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDD 120
           VMIKSSKDTRYAVDSVVTHDGAKFPCWALP LSSFRQKFGEDAYNELDVIGVDEAQFFDD
Sbjct: 61  VMIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDD 120

Query: 121 LYDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT 180
           LYDFCCNVADRDGK+IVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT
Sbjct: 121 LYDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT 180

Query: 181 LRKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEALSSLI 236
           LRKTEETKTELIAGADVYMPVCRHHYA GQEVIQSSKNVMGSRTITSNLEAL SLI
Sbjct: 181 LRKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTITSNLEALPSLI 236

[Close]

BLAST of Chy11G192780 vs. ExPASy TrEMBL
Match: A0A6J1CH59 (Thymidine kinase OS=Momordica charantia OX=3673 GN=LOC111011151 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 8.9e-112
Identity = 204/236 (86.44%), Postives = 222/236 (94.07%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MDS R+ L LT++    +RA S  R+AGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MDSFRSSLSLTTTDGGTVRAGSYPRVAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDGAKFPCWALPDLSSFRQKFGEDAY++LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYDKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVAD+DGK+++VAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADKDGKIVIVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTIT--SNLEALSSL 235
           RKTEET+TELIAGADVYMPVCR HYA GQ+VIQ+SKNV+GSRT+T  SNLEAL+SL
Sbjct: 181 RKTEETRTELIAGADVYMPVCRQHYANGQQVIQASKNVLGSRTVTTGSNLEALASL 236

[Close]

BLAST of Chy11G192780 vs. NCBI nr
Match: XP_011656878.1 (thymidine kinase a [Cucumis sativus] >KAE8646797.1 hypothetical protein Csa_005307 [Cucumis sativus])

HSP 1 Score: 449 bits (1154), Expect = 3.87e-158
Identity = 220/231 (95.24%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+SCRT LP TSSYAD +R ESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MESCRTSLPFTSSYADTVRPESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDG KFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGVKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVADRDGK+IVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEAL 231
           RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKN MGSRTI SNLEAL
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNAMGSRTIASNLEAL 231

[Close]

BLAST of Chy11G192780 vs. NCBI nr
Match: XP_008464186.1 (PREDICTED: thymidine kinase [Cucumis melo] >TYK11901.1 thymidine kinase [Cucumis melo var. makuwa])

HSP 1 Score: 443 bits (1139), Expect = 2.35e-156
Identity = 222/235 (94.47%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+SCR+ L LTSS ADAIR ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSGRNVV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAVDSVVTHDGAKFPCWALP LSSFRQKFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVADRDGK+IVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEALSSLI 235
           RKTEETKTELIAGADVYMPVCRHHYA GQEVIQSSKNVMGSRTI SNLEAL SLI
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTIASNLEALPSLI 235

[Close]

BLAST of Chy11G192780 vs. NCBI nr
Match: KAA0046021.1 (thymidine kinase [Cucumis melo var. makuwa])

HSP 1 Score: 440 bits (1132), Expect = 2.84e-155
Identity = 223/236 (94.49%), Postives = 226/236 (95.76%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSG-RNV 60
           M+SCR+ L LTSS ADAIR ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSG RNV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGNRNV 60

Query: 61  VMIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDD 120
           VMIKSSKDTRYAVDSVVTHDGAKFPCWALP LSSFRQKFGEDAYNELDVIGVDEAQFFDD
Sbjct: 61  VMIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDD 120

Query: 121 LYDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT 180
           LYDFCCNVADRDGK+IVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT
Sbjct: 121 LYDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT 180

Query: 181 LRKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTITSNLEALSSLI 235
           LRKTEETKTELIAGADVYMPVCRHHYA GQEVIQSSKNVMGSRTITSNLEAL SLI
Sbjct: 181 LRKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTITSNLEALPSLI 236

[Close]

BLAST of Chy11G192780 vs. NCBI nr
Match: XP_038901065.1 (thymidine kinase isoform X1 [Benincasa hispida])

HSP 1 Score: 424 bits (1090), Expect = 7.43e-149
Identity = 213/237 (89.87%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+SCR+   LTSS    +RAESSH LAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MESCRSSFSLTSSNDAVVRAESSHCLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDGAKFPCWALPDLSSFRQKFGEDAYN+LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVAD+DGK+IVVAGLDGDYLRRSFGSVLDV+PLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTIT--SNLEALSSLI 235
           RKTEET+TELIAGADVYMPVCR HYA GQEVIQSSKNV+GSRTI   SNLEAL SLI
Sbjct: 181 RKTEETETELIAGADVYMPVCRQHYANGQEVIQSSKNVLGSRTIRTGSNLEALPSLI 237

[Close]

BLAST of Chy11G192780 vs. NCBI nr
Match: XP_038901066.1 (thymidine kinase isoform X2 [Benincasa hispida])

HSP 1 Score: 419 bits (1076), Expect = 9.07e-147
Identity = 209/233 (89.70%), Postives = 219/233 (93.99%), Query Frame = 0


Query: 1   MDSCRTPLPLTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+SCR+   LTSS    +RAESSH LAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MESCRSSFSLTSSNDAVVRAESSHCLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDGAKFPCWALPDLSSFRQKFGEDAYN+LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180
           YDFCCNVAD+DGK+IVVAGLDGDYLRRSFGSVLDV+PLADTVTKLTARCELCGKRAFFTL
Sbjct: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETKTELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGSRTIT--SNLEAL 231
           RKTEET+TELIAGADVYMPVCR HYA GQEVIQSSKNV+GSRTI   SNLE L
Sbjct: 181 RKTEETETELIAGADVYMPVCRQHYANGQEVIQSSKNVLGSRTIRTGSNLEGL 233

[Close]

BLAST of Chy11G192780 vs. TAIR 10
Match: AT3G07800.1 (Thymidine kinase )

HSP 1 Score: 309.3 bits (791), Expect = 2.7e-84
Identity = 145/210 (69.05%), Postives = 174/210 (82.86%), Query Frame = 0


Query: 10  LTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTR 69
           L S       ++   R +G VHVI+GPMF+GK+T+LLRRIKSE + GR+V M+KSSKDTR
Sbjct: 13  LDSDVTGDFLSDLERRGSGAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTR 72

Query: 70  YAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVAD 129
           YA DSVVTHDG  FPCWALPDL SF +KFG DAYN+LDVIG+DEAQFF DLY+FCC VAD
Sbjct: 73  YAKDSVVTHDGIGFPCWALPDLMSFPEKFGLDAYNKLDVIGIDEAQFFGDLYEFCCKVAD 132

Query: 130 RDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKTE 189
            DGK+++VAGLDGDYLRRSFG+VLD++P+AD+VTKLTARCE+CG +AFFTLRK  +T+TE
Sbjct: 133 DDGKIVIVAGLDGDYLRRSFGAVLDIIPIADSVTKLTARCEVCGHKAFFTLRKNCDTRTE 192

Query: 190 LIAGADVYMPVCRHHYAIGQEVIQSSKNVM 220
           LI GADVYMPVCR HY     VI++SK V+
Sbjct: 193 LIGGADVYMPVCRKHYITNHIVIKASKKVL 222

[Close]

BLAST of Chy11G192780 vs. TAIR 10
Match: AT5G23070.1 (Thymidine kinase )

HSP 1 Score: 292.4 bits (747), Expect = 3.4e-79
Identity = 133/213 (62.44%), Postives = 175/213 (82.16%), Query Frame = 0


Query: 10  LTSSYADAIRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTR 69
           +TSS +    + SS    GE+HV++GPMF+GKTT LLRRI +E  +G+ + +IKS+KDTR
Sbjct: 62  VTSSSSSQPLSSSS---PGEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTR 121

Query: 70  YAVDSVVTHDGAKFPCWALPDLSSFRQKFGEDAY-NELDVIGVDEAQFFDDLYDFCCNVA 129
           Y  +S+VTHDG K+PCW+LPDLSSF+++FG D Y N LDVIG+DEAQFF DLY+FC   A
Sbjct: 122 YCTESIVTHDGEKYPCWSLPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAA 181

Query: 130 DRDGKVIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKT 189
           D++GK ++VAGLDGD++RR FGSVLD++P+ADTVTKLT+RCE+CGKRA FT+RKTEE +T
Sbjct: 182 DKEGKTVIVAGLDGDFMRRRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMRKTEEKET 241

Query: 190 ELIAGADVYMPVCRHHYAIGQEVIQSSKNVMGS 222
           ELI GA+VYMPVCR HY  GQ V+++++ V+ S
Sbjct: 242 ELIGGAEVYMPVCRSHYVCGQNVLETARAVLDS 271

The following BLAST results are available for this feature:

BLAST of Chy11G192780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81263	1.7e-83	66.82	Thymidine kinase OS=Oryza sativa subsp. japonica OX=39947 GN=TK PE=2 SV=2	[more]
Q9S750	3.7e-83	69.05	Thymidine kinase a OS=Arabidopsis thaliana OX=3702 GN=TK1A PE=1 SV=1	[more]
F4KBF5	4.7e-78	62.44	Thymidine kinase b OS=Arabidopsis thaliana OX=3702 GN=TK1B PE=1 SV=1	[more]
P23335	2.2e-35	40.45	Thymidine kinase OS=Swinepox virus (strain Kasza) OX=10277 GN=TK PE=3 SV=1	[more]
Q27564	5.5e-34	42.71	Thymidine kinase 1 OS=Dictyostelium discoideum OX=44689 GN=thyB PE=1 SV=1	[more]

BLAST of Chy11G192780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAS7	5.0e-123	95.24	Thymidine kinase OS=Cucumis sativus OX=3659 GN=Csa_6G110310 PE=3 SV=1	[more]
A0A5D3CJB6	2.8e-121	94.47	Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G006...	[more]
A0A1S3CKW8	2.8e-121	94.47	Thymidine kinase OS=Cucumis melo OX=3656 GN=LOC103502126 PE=3 SV=1	[more]
A0A5A7TX27	1.8e-120	94.49	Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005...	[more]
A0A6J1CH59	8.9e-112	86.44	Thymidine kinase OS=Momordica charantia OX=3673 GN=LOC111011151 PE=3 SV=1	[more]

BLAST of Chy11G192780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656878.1	3.87e-158	95.24	thymidine kinase a [Cucumis sativus] >KAE8646797.1 hypothetical protein Csa_0053...	[more]
XP_008464186.1	2.35e-156	94.47	PREDICTED: thymidine kinase [Cucumis melo] >TYK11901.1 thymidine kinase [Cucumis...	[more]
KAA0046021.1	2.84e-155	94.49	thymidine kinase [Cucumis melo var. makuwa]	[more]
XP_038901065.1	7.43e-149	89.87	thymidine kinase isoform X1 [Benincasa hispida]	[more]
XP_038901066.1	9.07e-147	89.70	thymidine kinase isoform X2 [Benincasa hispida]	[more]

BLAST of Chy11G192780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07800.1	2.7e-84	69.05	Thymidine kinase	[more]
AT5G23070.1	3.4e-79	62.44	Thymidine kinase	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.60.20		coord: 166..206 e-value: 9.8E-16 score: 59.8
None	No IPR available	PANTHER	PTHR11441:SF8	THYMIDINE KINASE B	coord: 15..228
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 166..208
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 22..165 e-value: 1.4E-45 score: 156.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 28..166
IPR001267	Thymidine kinase	PIRSF	PIRSF035805	Tdk	coord: 26..219 e-value: 6.1E-61 score: 203.1
IPR001267	Thymidine kinase	PFAM	PF00265	TK	coord: 28..205 e-value: 1.3E-52 score: 178.3
IPR001267	Thymidine kinase	PANTHER	PTHR11441	THYMIDINE KINASE	coord: 15..228
IPR020633	Thymidine kinase, conserved site	PROSITE	PS00603	TK_CELLULAR_TYPE	coord: 192..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G192780.1	Chy11G192780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0046104	thymidine metabolic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004797	thymidine kinase activity