Chy11G192710 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G192710
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	patellin-1-like
Location	chrH11: 8762826 .. 8763451 (+)
RNA-Seq Expression	Chy11G192710
Synteny	Chy11G192710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTGCTGAGGTAAATTTGGCTTCCCATAATTAAGCAAGTTTCTCTCTCTCTGTTTTTTTTTTCTTTAAATTAATCATAATTCAAAATCATATAACTATGTTTCTCGATACATTTGAACTTCTTTTATGTATGGATATGTGAAACTCTTTTGAACAAATTTGGAACTGAGTCATTGTTCTTTGCAGGTTGTACCACCGGAGACAGCTCTCTCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGACAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAAAAGAATGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGACGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAAGAGAAGCCAGAGGAAGAGGTTGAAGCAGAGAAGGTTGAGTAA

mRNA sequence

ATGGCTACTGCTGAGGTTGTACCACCGGAGACAGCTCTCTCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGACAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAAAAGAATGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGACGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAAGAGAAGCCAGAGGAAGAGGTTGAAGCAGAGAAGGTTGAGTAA

Coding sequence (CDS)

ATGGCTACTGCTGAGGTTGTACCACCGGAGACAGCTCTCTCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGACAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAAAAGAATGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGACGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAAGAGAAGCCAGAGGAAGAGGTTGAAGCAGAGAAGGTTGAGTAA

Protein sequence

MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAVEETETPVEVETKEVVVEEEAKEEKNEEEVVEEEEKEENKTEEAAEVVVEDETKAPVEEAEEKAVEVVEEKPAEEAEEKPEEEVEAEKVE*

Homology

[Close]

BLAST of Chy11G192710 vs. ExPASy TrEMBL
Match: A0A0A0KAS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.4e-46
Identity = 140/150 (93.33%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV PETAL EEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKN-EEEVVEEEEKEENKTEEAAEVVVEDETKAPVEEA 120
           EE ETPVEVETKEVVVEEEAKEEKN EEEVVEEEEKEENKTEEAAEVVVE+ETKAPVEEA
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 121 EEKAVEVVEEKPAEEAEEKPEEEVEAEKVE 150
           EEKAVEV   KPAEEAEEK EEEV AEKVE
Sbjct: 121 EEKAVEV---KPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of Chy11G192710 vs. ExPASy TrEMBL
Match: A0A5A7UC23 (Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001030 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.2e-40
Identity = 131/155 (84.52%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV P+TA+ EEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEVVEEEEKEENKTEEAAEVVVEDETKA-----P 120
           EETETPVE ETKEVVVEEE+KEEKNEEEVVEEEEKEE KTEEAAE  V +ETKA     P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 V-EEAEEKAVEVVEEKPAEEAEEKPEEEVEAEKVE 150
           V EE EEKAVEVVEEKP EE EEKPEEEVEAEK E
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of Chy11G192710 vs. ExPASy TrEMBL
Match: A0A1S3C239 (patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.2e-40
Identity = 131/155 (84.52%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV P+TA+ EEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEVVEEEEKEENKTEEAAEVVVEDETKA-----P 120
           EETETPVE ETKEVVVEEE+KEEKNEEEVVEEEEKEE KTEEAAE  V +ETKA     P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 V-EEAEEKAVEVVEEKPAEEAEEKPEEEVEAEKVE 150
           V EE EEKAVEVVEEKP EE EEKPEEEVEAEK E
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of Chy11G192710 vs. ExPASy TrEMBL
Match: A0A6J1I4V1 (fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111469887 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-05
Identity = 90/164 (54.88%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV  E AL EE T   EVEVPP KVEEE    P   DPPAEEVAKEE      A 
Sbjct: 1   MATAEVVTQEPALQEEVT---EVEVPPLKVEEE---APAAADPPAEEVAKEE------AA 60

Query: 61  EETETPVEVETKEVVV---EEEAKEEKNEEE------VVEEEEKEENKTEEAAEVV---- 120
           E  E PVEVETKEVV    EEEAKEE  EE+       VE EEKEE   E    V     
Sbjct: 61  EVAEPPVEVETKEVVAKEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAEEEE 120

Query: 121 -VEDETKAPVEEAEEKAVEVVEEKPAEEAEEKP-EEEVEAEKVE 150
             E+E K   E A E+    V+E  AEEAEEKP EEE  AEK E
Sbjct: 121 EEEEEAKPEAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152

[Close]

BLAST of Chy11G192710 vs. ExPASy TrEMBL
Match: A0A6J1G7J6 (enolase-phosphatase E1-like OS=Cucurbita moschata OX=3662 GN=LOC111451476 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 88/164 (53.66%), Postives = 93/164 (56.71%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV  E AL EE T   EVEVPP KVEEE          PAEEVAKEE      A 
Sbjct: 1   MATAEVVTQEAALQEEVT---EVEVPPLKVEEE---------APAEEVAKEE------AA 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEV----------VEEEEKEENKTEEAAEVVVED 120
           E  E PV VETKEVV EEE +EE  EE V          VE EEKEE   E    V  E+
Sbjct: 61  EVAEPPVAVETKEVVAEEEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAAAESEPAVAAEE 120

Query: 121 ETKAPVEE----AEEKAVEVVEEKPAEEAEEKP-EEEVEAEKVE 150
           E +    E    AEE+AVE V+E  AEEAEEKP EEE  AEK E
Sbjct: 121 EEEEAKPEAEPAAEEEAVE-VKETAAEEAEEKPAEEEQAAEKAE 145

[Close]

BLAST of Chy11G192710 vs. NCBI nr
Match: XP_004140479.1 (cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothetical protein Csa_004785 [Cucumis sativus])

HSP 1 Score: 194 bits (494), Expect = 6.69e-61
Identity = 140/150 (93.33%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV PETAL EEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEE-VVEEEEKEENKTEEAAEVVVEDETKAPVEEA 120
           EE ETPVEVETKEVVVEEEAKEEKNEEE VVEEEEKEENKTEEAAEVVVE+ETKAPVEEA
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 121 EEKAVEVVEEKPAEEAEEKPEEEVEAEKVE 149
           EEKAVEV   KPAEEAEEK EEEV AEKVE
Sbjct: 121 EEKAVEV---KPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of Chy11G192710 vs. NCBI nr
Match: XP_008455963.1 (PREDICTED: patellin-1-like [Cucumis melo])

HSP 1 Score: 177 bits (448), Expect = 8.62e-54
Identity = 131/155 (84.52%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV P+TA+ EEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEVVEEEEKEENKTEEAAEVVVEDETKA-----P 120
           EETETPVE ETKEVVVEEE+KEEKNEEEVVEEEEKEE KTEEAAE  V +ETKA     P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 VEEAEE-KAVEVVEEKPAEEAEEKPEEEVEAEKVE 149
           VEE EE KAVEVVEEKP EE EEKPEEEVEAEK E
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of Chy11G192710 vs. NCBI nr
Match: KAA0053292.1 (patellin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (448), Expect = 8.15e-52
Identity = 131/155 (84.52%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV P+TA+ EEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEVVEEEEKEENKTEEAAEVVVEDETKA-----P 120
           EETETPVE ETKEVVVEEE+KEEKNEEEVVEEEEKEE KTEEAAE  V +ETKA     P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 VEEAEE-KAVEVVEEKPAEEAEEKPEEEVEAEKVE 149
           VEE EE KAVEVVEEKP EE EEKPEEEVEAEK E
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of Chy11G192710 vs. NCBI nr
Match: XP_038900947.1 (cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 142 bits (358), Expect = 2.54e-40
Identity = 112/151 (74.17%), Postives = 116/151 (76.82%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVVPPET L EEATEVVEV  PPPKVEEEEAPPP   DPPAEEVAKEE+ TDPPA 
Sbjct: 1   MATAEVVPPETVLPEEATEVVEV--PPPKVEEEEAPPPAAVDPPAEEVAKEEEATDPPAA 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEVVEEEEKEENKTEEAAEVVVEDETKAPVEEA- 120
           EETETPVEVETKEVVVEEE KEEK EEE          K EEA E VVE+E+K    EA 
Sbjct: 61  EETETPVEVETKEVVVEEEPKEEKKEEE---------EKEEEAGEAVVEEESKPAEAEAP 120

Query: 121 -EEKAVEVVEEKPAEEAEEKPEEEVEAEKVE 149
            EE+AVEVVEEKP EE EEKPEEE  AEK E
Sbjct: 121 AEEEAVEVVEEKPVEETEEKPEEEPAAEKAE 140

[Close]

BLAST of Chy11G192710 vs. NCBI nr
Match: KAG6604898.1 (hypothetical protein SDJN03_02215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 2.31e-10
Identity = 93/175 (53.14%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 1   MATAEVVPPETALSEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVV  E AL EE TE   V+VPP KVEEE AP  V  DPPAEE+AKEE      A 
Sbjct: 1   MATAEVVTQEAALQEEVTE---VQVPPLKVEEE-APAAV--DPPAEELAKEE------AA 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEVVEEEEKEENKTEEAAEVVVEDETKAPVEE-- 120
           E  E PVEVETKEVV EEE +EE+ +EEVVEE      K  EAAEV  E++ +AP E   
Sbjct: 61  EVAEPPVEVETKEVVAEEEEEEEEAKEEVVEE-----KKEVEAAEVEAEEKEEAPAESEP 120

Query: 121 -----------------------AEEKAVEVVEEKPAEEAEEKP-EEEVEAEKVE 149
                                  AEE+AVEV E   AEEAEEKP EEE  AEK E
Sbjct: 121 AVAAAAEEEEEEEEEAKPEAEPAAEEEAVEVKE-TAAEEAEEKPAEEEPAAEKAE 157

The following BLAST results are available for this feature:

BLAST of Chy11G192710 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G192710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAS3	5.4e-46	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1	[more]
A0A5A7UC23	1.2e-40	84.52	Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G0010...	[more]
A0A1S3C239	1.2e-40	84.52	patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1	[more]
A0A6J1I4V1	7.9e-05	54.88	fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1G7J6	3.0e-04	53.66	enolase-phosphatase E1-like OS=Cucurbita moschata OX=3662 GN=LOC111451476 PE=4 S...	[more]

BLAST of Chy11G192710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140479.1	6.69e-61	93.33	cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothe...	[more]
XP_008455963.1	8.62e-54	84.52	PREDICTED: patellin-1-like [Cucumis melo]	[more]
KAA0053292.1	8.15e-52	84.52	patellin-1-like [Cucumis melo var. makuwa]	[more]
XP_038900947.1	2.54e-40	74.17	cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benin...	[more]
KAG6604898.1	2.31e-10	53.14	hypothetical protein SDJN03_02215, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy11G192710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..110
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G192710.1	Chy11G192710.1	mRNA