Chy11G192580 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G192580
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chrH11: 8486382 .. 8488221 (+)
RNA-Seq Expression	Chy11G192580
Synteny	Chy11G192580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGAGCAAATTCTGATGTTTATTAGGTGAATTTTGACAAAGAAAACAGGGCAGGTGGTTTTCTCGCCAAATTAGGAGACCTCTGGGTTTTTTTGTATTTCAGAGTGTACCGATAGAGTTAGGATCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTACTACAACTTTTCTGAAGAAACCTTGAACCAAAAAAAACTAAAATAAGTGAAATTGTAGGGACAAGTTAAAGGGGTCGTGGTACTTGCGATTGTTGGAGTGGTTCCGTTTCGAGAGCTACCTCATATTATACATAGGGAATCAGATTTACCTGTTGAGATAAGTTTTAGAGGACCTCAAAATGAATATTTTTACATAAAGAAATCTCATTTTGGTTAAATAGTGGAAGAGTTATGATCATTTGAATTGTGTGCTGCGAATCTGGAGAATTCTGAGAAATGTGTAGAGTATGGATTATTATTTTAAAGGATAGACTTCTTTAGCAATATCCTTAGTGCTATGTCAAGAATAATATTTGAAGATCATAATATTTAGGTTTCTAATACTCGGTTCTGGTTGTTTGACAGGCCAAGAGGAAATAGGTAGAATTTACACATCGAGAAACTAGTCTTAGACTGTGAATGACCAAACCAATTTTGAAAATATTTTTTTCTCCTAATTATTAATTATGATTAACTGATCTACACGTTTATTTGCAAGCTTTGAAAATCATTTGAATTCCATGATTATTTTCAAGTATGAGTTTCGAGACTAGATTTCTTAATGAAAATTTATGCTAGCACGTGATTATCGAATGCTTGGAAAGTATTTGAACCACTGTGTTTCAAACAAAGCAAGAGTTACCAAGTTTTGTTTTAAGAACTACAGCTTTTCACGAACAATCTAAGTAAGCTTGAGCTTTACGAAAGATAAAGATAGCAGGCATGTTTTAATGTTTTCGTATGATTTTTCTGATGTTTCTATTAACTACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCATAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTGCGACAAAGACGATGGGAGTGCTGGGCGGGTCCCACTACATCATAGAGCTTGTAAACGTTGTTGTACTGGGTGTGCCCTACACAACGTAGATTTTTCATGTTAGTTAAAATATTTGATATACTTGATATGCCTTGCTAGATTTCAATGACGTATATATTGAGTATTTGAGGAAGCTATTCTTACTATTGTATGTCTATGTTTACAACTCGTATAAACAGATTTATATGTGTAACCTTTCACGTGCTCTTACCTTTAAATTTCTAGTTTTAAAATGAGTCACTCACTGAGCTTTATAGCTTACCCTTCCAAAATGTTTTACCCACTTTTCAGGTAGAGATTGAGTTTCTTGTGCCTGATAAACTGCCTTAGTCTGCTGAAGCTCCGATATCGATTGTCAGTACGTGGTTAGAGTTGTGCATAGAGTCTGTTGTGTAATGATGTATATATCTTAGTATGATATAGATACTCTATAGTTTATGTAAGCTTTAGGTATTGCGGTTGTATAAACCTTTGTTAGTTATGTTTTGGTTAAGGTGTCACCAGGTTTACTCGTGAAATCAGTTATTTTTTGGCTACACTTCATGTATGTATATGATTAGTATAGGATCCGCTTTGTTATGTTGCATGTACAATAGTTTATATACTAGATTAGCAAGTTTATCACGATAAAGATTTCGCCAGAGTCGGCAGATACAGTTAGAGAAATGCATTGTCTGTCGGCTTCACGCCGTCTTTCAATCTAAGCTAG

mRNA sequence

CTTGAGCAAATTCTGATGTTTATTAGGTGAATTTTGACAAAGAAAACAGGGCAGGTGGTTTTCTCGCCAAATTAGGAGACCTCTGGGTTTTTTTGTATTTCAGAGTGTACCGATAGAGTTAGGATCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTACTACAACTTTTCTGAAGAAACCTTGAACCAAAAAAAACTAAAATAAGTGAAATTGTAGGGACAAGTTAAAGGGGTCGTGGTACTTGCGATTGTTGGAGTGGTTCCGTTTCGAGAGCTACCTCATATTATACATAGGGAATCAGATTTACCTGCATGTTTTAATGTTTTCGTATGATTTTTCTGATGTTTCTATTAACTACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCATAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTGCGACAAAGACGATGGGAGTGCTGGGCGGGTCCCACTACATCATAGAGCTTGTAAACGTTGTTGTACTGGGTGTGCCCTACACAACGTAGATTTTTCATGTGTCACCAGGTTTACTCGTGAAATCAATTAGCAAGTTTATCACGATAAAGATTTCGCCAGAGTCGGCAGATACAGTTAGAGAAATGCATTGTCTGTCGGCTTCACGCCGTCTTTCAATCTAAGCTAG

Coding sequence (CDS)

CTTGAGCAAATTCTGATGTTTATTAGGTGAATTTTGACAAAGAAAACAGGGCAGGTGGTTTTCTCGCCAAATTAGGAGACCTCTGGGTTTTTTTGTATTTCAGAGTGTACCGATAGAGTTAGGATCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTACTACAACTTTTCTGAAGAAACCTTGAACCAAAAAAAACTAAAATAAGTGAAATTGTAGGGACAAGTTAAAGGGGTCGTGGTACTTGCGATTGTTGGAGTGGTTCCGTTTCGAGAGCTACCTCATATTATACATAGGGAATCAGATTTACCTGCATGTTTTAATGTTTTCGTATGATTTTTCTGATGTTTCTATTAACTACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCATAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTGCGACAAAGACGATGGGAGTGCTGGGCGGGTCCCACTACATCATAGAGCTTGTAAACGTTGTTGTACTGGGTGTGCCCTACACAACGTAGATTTTTCATGTGTCACCAGGTTTACTCGTGAAATCAATTAGCAAGTTTATCACGATAAAGATTTCGCCAGAGTCGGCAGATACAGTTAGAGAAATGCATTGTCTGTCGGCTTCACGCCGTCTTTCAATCTAAGCTAG

Protein sequence

LEQILMFIR*ILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEETLNQKKLK*VKL*GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFFMCHQVYS*NQLASLSR*RFRQSRQIQLEKCIVCRLHAVFQSKLX

Homology

[Close]

BLAST of Chy11G192580 vs. ExPASy TrEMBL
Match: A0A5A7UNA3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00100 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-12
Identity = 77/236 (32.63%), Postives = 94/236 (39.83%), Query Frame = 0


Query: 1   LEQILMFIR*ILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEE 60
           LEQI +FI   L KKTGQ+VF+ N E SGF CISEC   VRISIW               
Sbjct: 92  LEQIRIFIWCFLMKKTGQLVFTRNQEVSGFSCISECIGGVRISIW--------------- 151

Query: 61  TLNQKKLK*VKL*GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*L 120
                                          +L     R+S   +   V      C Y  
Sbjct: 152 ------------------------------NKLKRSCARDSGSGSVLRVI-----CVY-- 211

Query: 121 HD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*T 180
                   A   R     I LLTLSVL NNDAVV     P+  R    + G      +  
Sbjct: 212 --------ARGIRFICLQISLLTLSVLRNNDAVVEID-FPVPDRL--PYLGSDVFCGMYN 246

Query: 181 LLYWVCPTQRRFFMCHQVYS*NQLASLSR*RFRQSRQIQLEKCIVCRLHAVFQSKL 237
            LY                   +LAS S   F+QSRQIQ++K +V RLHA+F+SK+
Sbjct: 272 SLY------------------TRLASSSHESFKQSRQIQVQKNVVRRLHAIFRSKV 246

[Close]

BLAST of Chy11G192580 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-11
Identity = 49/121 (40.50%), Postives = 57/121 (47.11%), Query Frame = 0


Query: 74  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYR 133
           GQVKGVVV  IVGVV FR +  IIH+ESDL                            YR
Sbjct: 714 GQVKGVVVYVIVGVVLFRGMSEIIHKESDLHVLRG-----------------------YR 773

Query: 134 VHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFF 193
           VHT  I LLTLSVL +N+ ++S  R PL +        P    +    LYW C TQR   
Sbjct: 774 VHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACSTQRNEV 811

Query: 194 M 195
           M
Sbjct: 834 M 811

[Close]

BLAST of Chy11G192580 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-11
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 114 F*CFY*LHD*GVE------PKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWE 173
           F CF+ L+D  ++         +   V+TG + LLTL+VL +NDA+VSAGR PLRQR+WE
Sbjct: 2   FQCFHMLYDISIDYMTEILSLRLEDTVYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWE 61

Query: 174 CWAGPTTS 176
           CWA PTTS
Sbjct: 62  CWASPTTS 69

[Close]

BLAST of Chy11G192580 vs. ExPASy TrEMBL
Match: A0A5A7TCY8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003250 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-10
Identity = 49/121 (40.50%), Postives = 57/121 (47.11%), Query Frame = 0


Query: 74  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYR 133
           GQVKGVVV  IVGVV FR +  IIH+ESDL                     + P+     
Sbjct: 734 GQVKGVVVYVIVGVVLFRGMSEIIHKESDLHV-------------------LRPR----- 793

Query: 134 VHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFF 193
              G I LLTLSVL +N+ VVS  R PL +        P    +    LYW CPTQR   
Sbjct: 794 ---GYISLLTLSVLRDNNVVVSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACPTQRNEV 827

Query: 194 M 195
           M
Sbjct: 854 M 827

[Close]

BLAST of Chy11G192580 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 140 PLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS 176
           PL TLSVL +NDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of Chy11G192580 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 5.97e-14
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 114 F*CFY*LHD*GVE--PKAIWYR----VHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWE 173
           F CF+ L+D  ++   + +  R    V+TG + LLTL+VL +NDA+VSAGR PLRQR+WE
Sbjct: 2   FQCFHMLYDISIDYMTEILSLRLEDTVYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWE 61

Query: 174 CWAGPTTS 175
           CWA PTTS
Sbjct: 62  CWASPTTS 69

[Close]

BLAST of Chy11G192580 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 1.56e-12
Identity = 77/235 (32.77%), Postives = 93/235 (39.57%), Query Frame = 0


Query: 1   LEQILMFIR*ILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEE 60
           LEQI +FI   L KKTGQ+VF+ N E SGF CISEC   VRISIW               
Sbjct: 92  LEQIRIFIWCFLMKKTGQLVFTRNQEVSGFSCISECIGGVRISIW--------------- 151

Query: 61  TLNQKKLK*VKL*GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*L 120
                                          +L     R+S   +   V      C Y  
Sbjct: 152 ------------------------------NKLKRSCARDSGSGSVLRVI-----CVY-- 211

Query: 121 HD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*T 180
                   A   R     I LLTLSVL NNDAVV     P+  R    + G      +  
Sbjct: 212 --------ARGIRFICLQISLLTLSVLRNNDAVVEID-FPVPDRL--PYLGSDVFCGMYN 245

Query: 181 LLYWVCPTQRRFFMCHQVYS*NQLASLSR*RFRQSRQIQLEKCIVCRLHAVFQSK 235
            LY                   +LAS S   F+QSRQIQ++K +V RLHA+F+SK
Sbjct: 272 SLY------------------TRLASSSHESFKQSRQIQVQKNVVRRLHAIFRSK 245

[Close]

BLAST of Chy11G192580 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 6.23e-12
Identity = 49/121 (40.50%), Postives = 57/121 (47.11%), Query Frame = 0


Query: 74  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYR 133
           GQVKGVVV  IVGVV FR +  IIH+ESDL                            YR
Sbjct: 714 GQVKGVVVYVIVGVVLFRGMSEIIHKESDLHVLRG-----------------------YR 773

Query: 134 VHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFF 193
           VHT  I LLTLSVL +N+ ++S  R PL +        P    +    LYW C TQR   
Sbjct: 774 VHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACSTQRNEV 811

[Close]

BLAST of Chy11G192580 vs. NCBI nr
Match: KAA0041324.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.73e-10
Identity = 49/121 (40.50%), Postives = 57/121 (47.11%), Query Frame = 0


Query: 74  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYR 133
           GQVKGVVV  IVGVV FR +  IIH+ESDL                     + P+     
Sbjct: 734 GQVKGVVVYVIVGVVLFRGMSEIIHKESDLHV-------------------LRPR----- 793

Query: 134 VHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFF 193
              G I LLTLSVL +N+ VVS  R PL +        P    +    LYW CPTQR   
Sbjct: 794 ---GYISLLTLSVLRDNNVVVSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACPTQRNEV 827

[Close]

BLAST of Chy11G192580 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.84e-08
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 140 PLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS 175
           PL TLSVL +NDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

The following BLAST results are available for this feature:

BLAST of Chy11G192580 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G192580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNA3	6.1e-12	32.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73...	[more]
A0A5D3BTJ5	3.1e-11	40.50	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]
A0A5A7SUV2	6.8e-11	52.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TCY8	4.4e-10	40.50	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BTP3	2.0e-07	83.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]

BLAST of Chy11G192580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033241.1	5.97e-14	54.41	hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041...	[more]
KAA0056684.1	1.56e-12	32.77	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK02787.1	6.23e-12	40.50	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]
KAA0041324.1	1.73e-10	40.50	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK03091.1	5.84e-08	83.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Chy11G192580 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G192580.1	Chy11G192580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding