Chy11G191870 (gene) Cucumber (hystrix) v1

Overview
NameChy11G191870
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGlutamate receptor
LocationchrH11: 7135005 .. 7135941 (-)
RNA-Seq ExpressionChy11G191870
SyntenyChy11G191870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCTCCCACTGTCGCTATGTGATTCTGTAAGTGTTCTTGAGATCGATTTTCTTTGAATCCCCGCTGTTAAATTTTGTTTTAGAAGTGGGGATTGATTGATGTCGAGTTTGTAATTCTATGTAATGTCCTGTTTCAGTTTAATTCAGTGACTGGAGTGTGGTTCGATGGAGAAGAATTCTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTAAGGGGAGATAACTTTTGTGTTGGTTTGCTGTGAACTTTCAGTTGTTAAGTCTGTTCTGTAACAGTAGTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGTTGTAAGCATCGATCAACAATGATTGATGGGATCATCGGCGCAACCATCACCACGTTGTTAAACAGCTTTAGGGCGTCAAATCGGATGCATGCATTAATTAGGAACAGCGTCCTGTTTTGGCTTAAAATCCTCTCCGAGTAAATTTTCTTGTTCATTCTTGAGCTTTGCTTATGGAAGTCAATCTTTATTCTCATTTTACGTTATTGGTTTAGTGTTTTTTTTTTACAATGACAGGTTCCACCGAAAGTAATCCCATGGGTTTGTTTTCTTTCACCGCCAATGGGATTCGAATGATTCCCTCTGATAAGACGTGCCAATCCCCCATGGCTTCGTTTTTCTTGCCTTCCTTTGTACTTATTCTTGACTCACATCTTTTTCCTATTCACGGTTTACTATTGATGATTCTGTGTTGCTAAAGGAGCTATGGTTAACTTGAGTTTATTCTTTACGAGCTCTATACAAGAATTAGTAGTAAATAGTTCTGTAATGAATCTTTTAGGTGGAATGCTTGTTCTGCTGTGGTTTAAGTTCTTGAGCTCCTTCTCTTCATTTAAAGTTTTCCTGGTTATCACCAATAGCTTTTTGCTTGTTCAGCAGTCTCCAGCTCTGTGA

mRNA sequence

ATGATCCTCCCACTGTCGCTATGTGATTCTTTTAATTCAGTGACTGGAGTGTGGTTCGATGGAGAAGAATTCTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTGGAATGCTTGTTCTGCTGTGGTTTAAGTTCTTGAGCTCCTTCTCTTCATTTAAAGTTTTCCTGGTTATCACCAATAGCTTTTTGCTTGTTCAGCAGTCTCCAGCTCTGTGA

Coding sequence (CDS)

ATGATCCTCCCACTGTCGCTATGTGATTCTTTTAATTCAGTGACTGGAGTGTGGTTCGATGGAGAAGAATTCTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTGGAATGCTTGTTCTGCTGTGGTTTAAGTTCTTGAGCTCCTTCTCTTCATTTAAAGTTTTCCTGGTTATCACCAATAGCTTTTTGCTTGTTCAGCAGTCTCCAGCTCTGTGA

Protein sequence

MILPLSLCDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWFKFLSSFSSFKVFLVITNSFLLVQQSPAL*
Homology
[Close]
BLAST of Chy11G191870 vs. ExPASy TrEMBL
Match: A0A5A7TN37 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00740 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MILPLSLCDSFNSVTGVWFDGEEFWGSAILSFDKQIS 38
          MILPLSL DSFNSVTGVWF G+EFWGSAILSFDKQIS
Sbjct: 3  MILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIS 39

[Close]
BLAST of Chy11G191870 vs. ExPASy TrEMBL
Match: A0A5D3DKR7 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00320 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 1  MILPLSLCDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWF 46
          MILPLSL DSFNSVTGVWF G+EFWGSAILSFDKQI  M+ L  F
Sbjct: 3  MILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIIAMVNLSLF 47

[Close]
BLAST of Chy11G191870 vs. ExPASy TrEMBL
Match: A0A0A0LT93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418910 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 38 GMLVLLWFKFLSSFSSFKVFLVITNSFLLVQQSPAL 74
          GMLVLLW  FLSSFSSFKVFLVITNSFLLVQQSPAL
Sbjct: 46 GMLVLLWSMFLSSFSSFKVFLVITNSFLLVQQSPAL 81

[Close]
BLAST of Chy11G191870 vs. NCBI nr
Match: KAE8652291.1 (hypothetical protein Csa_021898 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 4.63e-40
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 1  MILPLSLCDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWFKFLSSFSSFKVFLVI 60
          MILPLSL DSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLW  FLSSFSSFKVFLVI
Sbjct: 1  MILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWSMFLSSFSSFKVFLVI 60

Query: 61 TNSFLLVQQSPAL 73
          TNSFLLVQQSPAL
Sbjct: 61 TNSFLLVQQSPAL 73

[Close]
BLAST of Chy11G191870 vs. NCBI nr
Match: KAA0043456.1 (glutamate receptor 3.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 4.50e-13
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MILPLSLCDSFNSVTGVWFDGEEFWGSAILSFDKQIS 37
          MILPLSL DSFNSVTGVWF G+EFWGSAILSFDKQIS
Sbjct: 3  MILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIS 39

[Close]
BLAST of Chy11G191870 vs. NCBI nr
Match: TYK24226.1 (glutamate receptor 3.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 6.16e-13
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MILPLSLCDSFNSVTGVWFDGEEFWGSAILSFDKQISGM 39
          MILPLSL DSFNSVTGVWF G+EFWGSAILSFDKQI  M
Sbjct: 3  MILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIIAM 41

[Close]
BLAST of Chy11G191870 vs. NCBI nr
Match: KAG7010730.1 (hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 2.73e-07
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   MILPLSLCDSFNSVTGVWFDG---EEFWGSAILSFDKQIS 37
           M+LPLSL DSFNSVT VWF+G   ++ +GSAIL FDK+IS
Sbjct: 99  MVLPLSLRDSFNSVTEVWFNGSRGKKLYGSAILRFDKEIS 138

The following BLAST results are available for this feature:
BLAST of Chy11G191870 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G191870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TN374.0e-1091.89Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G... [more]
A0A5D3DKR75.2e-1080.00Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00... [more]
A0A0A0LT935.4e-0794.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418910 PE=4 SV=1[more]
BLAST of Chy11G191870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652291.14.63e-4095.89hypothetical protein Csa_021898 [Cucumis sativus][more]
KAA0043456.14.50e-1391.89glutamate receptor 3.7-like [Cucumis melo var. makuwa][more]
TYK24226.16.16e-1387.18glutamate receptor 3.7-like [Cucumis melo var. makuwa][more]
KAG7010730.12.73e-0767.50hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Chy11G191870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G191870.1Chy11G191870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015276 ligand-gated ion channel activity