Chy11G191430 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G191430
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Exosome complex component RRP45A-like isoform X1
Location	chrH11: 6390190 .. 6392078 (+)
RNA-Seq Expression	Chy11G191430
Synteny	Chy11G191430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTCCATCTTCTTCTTCTATTCTTCCTGTTTGTGGTCGACTGATGAAGACCATCCAAGACGACATCGATATAAGTGTCTTCATCGACTTGAAGACATTGAGAGCTCTGCACCATCCAATGTATCAAGTGTTCCTAAAGTCCCAAGCACCTCTACCATATTGCATGCTTCATCTGTACCCATTCCCAGTCGCTCAACCACTTAGTGCGTAAATGAGTCAAATTCAGTTCCTCAGGCTCTTACTACTCAGGTACCAAGGCCTTTCACCTCTTCATCCATTCCTGGCTCTAGAATTGCCATTGAAACTATTCAACTGGACTATGATTTTGACTCTTCTAAGGAGATGATATAGTTGTTTTATAAAAAAAATTTAGCCGCTCTCAACGTCTTGAGGTCTTTGTGTGTCCACTTGCTTGTAGGCATGTTCTAGTTTCCTTTACCCTGCCTTCCTCCTCCCATACATCGTCTCCTACTAGTCATACTGCCTATGTGCATGTGTCAAATGCCTCAGTTAGCCCCACTGTTAACAATTTTTCTGACCTAAACAATGTATTGAGTGATTCTTCCATGCTTGAAGTTCCTAAGTCCATACCTTCTTCATCTCAAGTACCTCCATGTCATTATACTGCTTCCACTTTGCCTTCCAATCTAGGCTCTGCTACTCCTGAAGTACCTATGAATGCCCAGAGTTGCCCTTATTTTGAAGTCTAATTCTTCTGTTGATCCTCCTACTCCCTCTAATCCGCCAATAAACCCCTCCACTGTTGTTCCCCACTTCGGGGACATGAGGTCTTCTACTATTCCCAAAATGACTCGTCGTCCTCTAGTTAAAGGCCAGCGTGTAATTACTACCAAGGTTGGTCATGTAAGCTTCCGCCAAATGTGCCAACAGTACTTATTCACGGTGTTTTTTTCCATTCAGAGGATAGTGTACAAATGGAAGTACATTGTGCAATAACGCATTCCTAATGAGATGAATATTTCAGATAAACATCAGTCTCTTGTACTCTTCTGATTGAATTCATTCAGCCAGTTGGTTTTCTCAAAACTGTGACATATGTTGGTCTCTTCTATCCCCGACTGATTCATGAGTTAATCATTAATCTTCCAGCAGAGTTCAACGATCCGAGTGTTGCTAAATAGCATAAGATGCATGTTCAAGGGGTCTATTTTAATATCTCTCCATCACTTATTAATCACTTCTTGGGTCTGACTGTTCCTGATGATCTTGTGCGCAATTATCCATCCACTAGGCAACTGGCTGTGGAGTTATCTTGTGGCATAATACACATTCCTGTCCTGTTGATGGTCAGCTACCTGCGGTCTCTTTAAGCATAAAGTATGTCATTCTGCACAAGATAGGTATTGCCAACTGGATCCCCTCTACTCATGTTCCACTGTATCTATTGTTCTTGGTCATTTTATATATTTTATATATCCAATAAATGTGAGGGAGTTTGTTTTTCGCACTTATTGCGCCATGTGGATTTGTTTGGGATCAATATCCCTATCTGTTTTTCTCACCTCTGTGTGCCTTTTCGTTGGCTCAACATCCTTCCATTTTATCTCATATTGATATGGCTGGCCCTACACCAAAGACTATGGCCCTGAGTTTCAGACTATTTCTTGATGCTCATGTACCGGACCTGCCTTCAAAGTTTTGTCCTCCTCCTCCTTTTCTGATATTTATGTTCCTTCTGTTGGGTTGCTACTTCTTGCTGCCACTGTATCTTGGGTCTTTCATGTTATGTTTGAGGAATCCCGTGTGCTTGCTAGCGCAGTGAGGGATTTATCTACCCAACGATCTACTATTGATTCATTACTTCAAGATCTTCAACGGCTGGTGGCTTCAACTTCTACTTCTGCTTCTGGACCTCCTTCCTAG

mRNA sequence

ATGGCTTTTCCATCTTCTTCTTCTATTCTTCCTGTTTGTGGTCGACTGATGAAGACCATCCAAGACGACATCGATATAAGTGTCTTCATCGACTTGAAGACATTGAGAGCTCTGCACCATCCAATGTATCAAGTGTTCCTAAAGTCCCAAGCACCTCTACCATATTGCATGCTTCATCTGCATGTTCTAGTTTCCTTTACCCTGCCTTCCTCCTCCCATACATCGTCTCCTACTAGTCATACTGCCTATGTGCATGTGTCAAATGCCTCAGTTAGCCCCACTGTTAACAATTTTTCTGACCTAAACAATGTATTGAGTGATTCTTCCATGCTTGAAGTTCCTAAGTCCATACCTTCTTCATCTCAAGTACCTCCATGTCATTATACTGCTTCCACTTTGCCTTCCAATCTAGGCTCTGCTACTCCTGAAGAATCCCGTGTGCTTGCTAGCGCAGTGAGGGATTTATCTACCCAACGATCTACTATTGATTCATTACTTCAAGATCTTCAACGGCTGGTGGCTTCAACTTCTACTTCTGCTTCTGGACCTCCTTCCTAG

Coding sequence (CDS)

ATGGCTTTTCCATCTTCTTCTTCTATTCTTCCTGTTTGTGGTCGACTGATGAAGACCATCCAAGACGACATCGATATAAGTGTCTTCATCGACTTGAAGACATTGAGAGCTCTGCACCATCCAATGTATCAAGTGTTCCTAAAGTCCCAAGCACCTCTACCATATTGCATGCTTCATCTGCATGTTCTAGTTTCCTTTACCCTGCCTTCCTCCTCCCATACATCGTCTCCTACTAGTCATACTGCCTATGTGCATGTGTCAAATGCCTCAGTTAGCCCCACTGTTAACAATTTTTCTGACCTAAACAATGTATTGAGTGATTCTTCCATGCTTGAAGTTCCTAAGTCCATACCTTCTTCATCTCAAGTACCTCCATGTCATTATACTGCTTCCACTTTGCCTTCCAATCTAGGCTCTGCTACTCCTGAAGAATCCCGTGTGCTTGCTAGCGCAGTGAGGGATTTATCTACCCAACGATCTACTATTGATTCATTACTTCAAGATCTTCAACGGCTGGTGGCTTCAACTTCTACTTCTGCTTCTGGACCTCCTTCCTAG

Protein sequence

MAFPSSSSILPVCGRLMKTIQDDIDISVFIDLKTLRALHHPMYQVFLKSQAPLPYCMLHLHVLVSFTLPSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLGSATPEESRVLASAVRDLSTQRSTIDSLLQDLQRLVASTSTSASGPPS*

Homology

[Close]

BLAST of Chy11G191430 vs. ExPASy TrEMBL
Match: A0A5A7UC75 (Exosome complex component RRP45A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00440 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-05
Identity = 37/75 (49.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 69   PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHY 128
            PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +
Sbjct: 979  PSSPHTSSLATHAENVHVSTTLVSPTIDDLPDLNVVPGDSSMSEVP------ALYLPSDF 1038

Query: 129  TASTLPSNLGSATPE 144
              STLPS+LG   PE
Sbjct: 1039 ACSTLPSDLGFTNPE 1047

[Close]

BLAST of Chy11G191430 vs. ExPASy TrEMBL
Match: A0A5D3D5X0 (Exosome complex component RRP45A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001030 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 40/79 (50.63%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 69   PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHY 128
            PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +
Sbjct: 1047 PSSPHTSSLATHAENVHVSTTLVSPTIDDLPDLNVVPGDSSMSEVP------ALYLPSDF 1106

Query: 129  TASTLPSNLGSATPEESRV 148
            T STLPS+LG  T  ES V
Sbjct: 1107 TGSTLPSDLG-FTNHESHV 1118

[Close]

BLAST of Chy11G191430 vs. NCBI nr
Match: KAA0051235.1 (exosome complex component RRP45A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.50e-05
Identity = 37/75 (49.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 69   PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHY 128
            PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +
Sbjct: 979  PSSPHTSSLATHAENVHVSTTLVSPTIDDLPDLNVVPGDSSMSEVP------ALYLPSDF 1038

Query: 129  TASTLPSNLGSATPE 143
              STLPS+LG   PE
Sbjct: 1039 ACSTLPSDLGFTNPE 1047

[Close]

BLAST of Chy11G191430 vs. NCBI nr
Match: TYK18893.1 (exosome complex component RRP45A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.75e-05
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 69   PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHY 128
            PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +
Sbjct: 1047 PSSPHTSSLATHAENVHVSTTLVSPTIDDLPDLNVVPGDSSMSEVP------ALYLPSDF 1106

Query: 129  TASTLPSNLG 138
            T STLPS+LG
Sbjct: 1107 TGSTLPSDLG 1110

The following BLAST results are available for this feature:

BLAST of Chy11G191430 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G191430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC75	7.5e-05	49.33	Exosome complex component RRP45A-like isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3D5X0	1.7e-04	50.63	Exosome complex component RRP45A-like isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Chy11G191430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051235.1	3.50e-05	49.33	exosome complex component RRP45A-like isoform X1 [Cucumis melo var. makuwa]	[more]
TYK18893.1	8.75e-05	51.43	exosome complex component RRP45A-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Chy11G191430 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G191430.1	Chy11G191430.1	mRNA