Chy11G191400 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G191400
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 6341160 .. 6341564 (-)
RNA-Seq Expression	Chy11G191400
Synteny	Chy11G191400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCTCAGAATCTTTTACTCTTTTTTTCAATAACATACTTAAAAACATTTACAATCAAACCCCACCACAATAACCACAATAACAACAACATCAACTACAACATTATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCACCACCACCTCCAACCTTCTAGTCCACGGGAGAGCACTCCAGCCCGATGCCACGGTGGAGATCGGATCCCATGCCCATGAATTCAAATTGAAACCAAAGGATGATGGTGGTGGTGGTGACAGTGGTGGCGGTGGTTCGGACACATCGAATCAACGAGTATTTACGTTGGCGTCAGGACCGAGCAGGAGGGGAGACGGGCACAAGTGA

mRNA sequence

ATGCCGTTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCTCAGAATCTTTTACTCTTTTTTTCAATAACATACTTAAAAACATTTACAATCAAACCCCACCACAATAACCACAATAACAACAACATCAACTACAACATTATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCACCACCACCTCCAACCTTCTAGTCCACGGGAGAGCACTCCAGCCCGATGCCACGGTGGAGATCGGATCCCATGCCCATGAATTCAAATTGAAACCAAAGGATGATGGTGGTGGTGGTGACAGTGGTGGCGGTGGTTCGGACACATCGAATCAACGAGTATTTACGTTGGCGTCAGGACCGAGCAGGAGGGGAGACGGGCACAAGTGA

Coding sequence (CDS)

ATGCCGTTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCTCAGAATCTTTTACTCTTTTTTTCAATAACATACTTAAAAACATTTACAATCAAACCCCACCACAATAACCACAATAACAACAACATCAACTACAACATTATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCACCACCACCTCCAACCTTCTAGTCCACGGGAGAGCACTCCAGCCCGATGCCACGGTGGAGATCGGATCCCATGCCCATGAATTCAAATTGAAACCAAAGGATGATGGTGGTGGTGGTGACAGTGGTGGCGGTGGTTCGGACACATCGAATCAACGAGTATTTACGTTGGCGTCAGGACCGAGCAGGAGGGGAGACGGGCACAAGTGA

Protein sequence

MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDGGGGDSGGGGSDTSNQRVFTLASGPSRRGDGHK*

Homology

[Close]

BLAST of Chy11G191400 vs. ExPASy TrEMBL
Match: A0A0A0LNA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLL 60
           MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLL
Sbjct: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLL 60

Query: 61  LPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDGGGGDSGGGGSDTSNQRVF 120
           LPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDD GGGDSGGGGSDTSNQRVF
Sbjct: 61  LPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGGDSGGGGSDTSNQRVF 120

Query: 121 TLASGPSRRGDGHK 135
           TLASGPSRRGDGHK
Sbjct: 121 TLASGPSRRGDGHK 134

[Close]

BLAST of Chy11G191400 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_022628 [Cucumis sativus])

HSP 1 Score: 259 bits (661), Expect = 8.46e-87
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLL 60
           MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLL
Sbjct: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLL 60

Query: 61  LPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDGGGGDSGGGGSDTSNQRVF 120
           LPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDD GGGDSGGGGSDTSNQRVF
Sbjct: 61  LPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGGDSGGGGSDTSNQRVF 120

Query: 121 TLASGPSRRGDGHK 134
           TLASGPSRRGDGHK
Sbjct: 121 TLASGPSRRGDGHK 134

[Close]

BLAST of Chy11G191400 vs. NCBI nr
Match: KAG6571236.1 (hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (264), Expect = 4.78e-27
Identity = 63/84 (75.00%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 52  HLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDGGGGDSGGGG 111
           HLCLLSLLLLPLLLP T+++LL H RALQ +      S AHEFKLKPKD GGGG+ GGGG
Sbjct: 5   HLCLLSLLLLPLLLPATSTSLL-HRRALQAN------SDAHEFKLKPKDGGGGGNEGGGG 64

Query: 112 S-DTSNQRVFTLASGPSRRGDGHK 134
             D SNQRVFTLASGPSRRGDGHK
Sbjct: 65  GFDMSNQRVFTLASGPSRRGDGHK 81

The following BLAST results are available for this feature:

BLAST of Chy11G191400 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G191400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA9	1.1e-66	99.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1	[more]

BLAST of Chy11G191400 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63303.1	8.46e-87	99.25	hypothetical protein Csa_022628 [Cucumis sativus]	[more]
KAG6571236.1	4.78e-27	75.00	hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy11G191400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G191400.1	Chy11G191400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane