Chy11G190880 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G190880
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Gamma-tubulin complex component
Location	chrH11: 5538816 .. 5539095 (+)
RNA-Seq Expression	Chy11G190880
Synteny	Chy11G190880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAAGGAAGAGTAAAAGTTTGATTGACTGCACTAGTGATATATTCGCTAATGGGATTCATTTTGCAGCGCCAATTTCCTCCTTGAGGACGAGTGAGCTTGATCTGGTGTGTGATGGGTTTTTTATATTTTGTATCACACGTCTGTAGATTTTCCCGTGGGTTTAGTTTTAGCTGTGAGTTTTTTCTCTTTATGTAGGTACGCGGTGTATTACAAATGTTGCAAGGATTTTCCGATTCACTTTTTTGTTGGGATTGTAGTGGGAAGAAATTTTGA

mRNA sequence

ATGGAGCAAAGGAAGAGTAAAAGTTTGATTGACTGCACTAGTGATATATTCGCTAATGGGATTCATTTTGCAGCGCCAATTTCCTCCTTGAGGACGAGTGAGCTTGATCTGGTACGCGGTGTATTACAAATGTTGCAAGGATTTTCCGATTCACTTTTTTGTTGGGATTGTAGTGGGAAGAAATTTTGA

Coding sequence (CDS)

ATGGAGCAAAGGAAGAGTAAAAGTTTGATTGACTGCACTAGTGATATATTCGCTAATGGGATTCATTTTGCAGCGCCAATTTCCTCCTTGAGGACGAGTGAGCTTGATCTGGTACGCGGTGTATTACAAATGTTGCAAGGATTTTCCGATTCACTTTTTTGTTGGGATTGTAGTGGGAAGAAATTTTGA

Protein sequence

MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF*

Homology

[Close]

BLAST of Chy11G190880 vs. ExPASy TrEMBL
Match: A0A0A0L296 (Gamma-tubulin complex component OS=Cucumis sativus OX=3659 GN=Csa_4G638490 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.9e-26
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 63
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. ExPASy TrEMBL
Match: A0A5A7VD97 (Gamma-tubulin complex component OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00550 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDSTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 63
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. ExPASy TrEMBL
Match: A0A5D3D9J5 (Gamma-tubulin complex component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003700 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDSTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 63
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. ExPASy TrEMBL
Match: A0A1S3BTD0 (Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDSTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 63
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. ExPASy TrEMBL
Match: A0A1S3BV48 (Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDSTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 63
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. NCBI nr
Match: XP_004141369.1 (gamma-tubulin complex component 5 isoform X4 [Cucumis sativus] >KGN55159.1 hypothetical protein Csa_012148 [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 4.00e-31
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 62
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. NCBI nr
Match: XP_011654086.1 (gamma-tubulin complex component 5 isoform X3 [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 4.00e-31
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 62
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. NCBI nr
Match: XP_031740262.1 (gamma-tubulin complex component 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 4.00e-31
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 62
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. NCBI nr
Match: XP_031740260.1 (gamma-tubulin complex component 5 isoform X1 [Cucumis sativus] >XP_031740261.1 gamma-tubulin complex component 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 4.00e-31
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 62
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. NCBI nr
Match: XP_008452497.1 (PREDICTED: gamma-tubulin complex component 5-like isoform X2 [Cucumis melo])

HSP 1 Score: 120 bits (301), Expect = 8.96e-30
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGK 60
          MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGK
Sbjct: 1  MEQRKSKSLIDSTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGK 60

Query: 61 KF 62
          KF
Sbjct: 61 KF 62

[Close]

BLAST of Chy11G190880 vs. TAIR 10
Match: AT1G80260.1 (Spc97 / Spc98 family of spindle pole body (SBP) component )

HSP 1 Score: 43.1 bits (100), Expect = 9.5e-05
Identity = 19/41 (46.34%), Postives = 25/41 (60.98%), Query Frame = 0


Query: 22 HFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF 63
          H    + S+  +ELDLVRG+LQ LQG S     WD +G+ F
Sbjct: 24 HSELALPSVSVTELDLVRGLLQALQGLSSPFLFWDQTGQTF 64

The following BLAST results are available for this feature:

BLAST of Chy11G190880 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G190880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L296	9.9e-26	96.77	Gamma-tubulin complex component OS=Cucumis sativus OX=3659 GN=Csa_4G638490 PE=3 ...	[more]
A0A5A7VD97	1.4e-24	95.16	Gamma-tubulin complex component OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3D9J5	1.4e-24	95.16	Gamma-tubulin complex component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BTD0	1.4e-24	95.16	Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=...	[more]
A0A1S3BV48	1.4e-24	95.16	Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=...	[more]

BLAST of Chy11G190880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141369.1	4.00e-31	96.77	gamma-tubulin complex component 5 isoform X4 [Cucumis sativus] >KGN55159.1 hypot...	[more]
XP_011654086.1	4.00e-31	96.77	gamma-tubulin complex component 5 isoform X3 [Cucumis sativus]	[more]
XP_031740262.1	4.00e-31	96.77	gamma-tubulin complex component 5 isoform X2 [Cucumis sativus]	[more]
XP_031740260.1	4.00e-31	96.77	gamma-tubulin complex component 5 isoform X1 [Cucumis sativus] >XP_031740261.1 g...	[more]
XP_008452497.1	8.96e-30	95.16	PREDICTED: gamma-tubulin complex component 5-like isoform X2 [Cucumis melo]	[more]

BLAST of Chy11G190880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80260.1	9.5e-05	46.34	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19302:SF65	GAMMA-TUBULIN COMPLEX COMPONENT	coord: 2..62
IPR007259	Gamma-tubulin complex component protein	PANTHER	PTHR19302	GAMMA TUBULIN COMPLEX PROTEIN	coord: 2..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G190880.1	Chy11G190880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031122	cytoplasmic microtubule organization
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0051225	spindle assembly
biological_process	GO:0000226	microtubule cytoskeleton organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000923	equatorial microtubule organizing center
cellular_component	GO:0000930	gamma-tubulin complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0005815	microtubule organizing center
molecular_function	GO:0043015	gamma-tubulin binding
molecular_function	GO:0051011	microtubule minus-end binding