Chy11G190840 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G190840
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 5474728 .. 5477148 (-)
RNA-Seq Expression	Chy11G190840
Synteny	Chy11G190840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGAAAGAACTTAATAGTCGTATTATAAAAAAAAGCGAACGATATAATCAGGAAAAGAGTTGGCCAGCATGGTGAAACCTATCCAGAATTTATAGAGTGGTTGCGCAAAGTGGATAATCAGCTTAGCAGCAACATACCGCAAGAAATAAACTGAAAATGAAGATGAAGATGGATGGGATAAGAAGGTTTTAAATCCGTCGTGCTATAACTTAGCCCAACGCCACCAACTGGGGAGACATACAAAGGAGCTAAATTTAATTATCCAACTTGTAGCCGAAGGAAAAGAGTTCATCAACGAATTTCACGCTCGTCACGAATTTGTAAGTTGTATTATATTACCATCTTTTGCAGAAAAAATGGGTTACTAAATAATTAATCGAGGTTCCACTTCTAAAACCTTATAATTGTCTCAAATAATTAAGAAGTCTATATTTAGTATGCAAAGTTGAGCTATTGAGTTGATCAAAGATCATTTGTTTTTTGCGTTAACTATTTTTTGTTTAAAGCATTCAATTACACTTATACTCTCAACTTTTCAAGAAAAAGTGTGGTGGTTGGCCAAATAAGCTAATTAATATCTTACTTGCAAATATAGCATATTTAGAATAAATATTTTACGGATATGACAACATTTTTAGAGAAATTGCATCCTATTGACAAAAAAAAAAATTAAAATATTCCATAAAACCTCTCTTTTATGACAAATATGACAAGTAACTAGATATATGAGACGACTAACAAAAAACTATCGTCTTTTAAATTTGCTATTTTTTTAATTTAAAAATGTAGTGACATGATCTTATTATCATAATTTTGTTTACTATTTTTGCAAACACCTCACTCTTTTATAGTTAATTGATAATTTTATTTCCAATTTTACCACAAATTCAAATGGGATTCAATTGCCGGGAACAAATTCATGATACGGTTATTCTCTCTCTTTGCTTGTCATGAAGAATATAAAGGGAAAAGGTCATGTAAGATGCAGGTCAAACACACTCAGCTTGTCCACATTGATATAGTAACAAATCCGACGCTGACTAACAGGAATAATGAATTGATAACAAATTATGTTATAAAGGAATCATGTTGATTATGAAAACACAAGTGACTCCTATTGTTATCACTACAACCAAGCTCGGATACAATTTATTGTAATTTCAACCAAGCTCTAACCACTTGTTAGAAATTCTATCCAAATTTTGTTACCACTCGTTAGAATTTACTCCAAGTTCTAAACCCACTTGGTATAATTTCCTACACTAGATCAAAAAACACAATGTCAAACCAACCAAAACGCAATAGCCAGATTTTCACACCCCCTTCCGGATCACCTCTCAACCTCTGAAACAGCGTGAAGCCAACCTATACCATCTCTTTCCTTGATGATACATGTTGACCGTACTCCTTTAATCTGTGGAAACATAAATATCATTCTAATATTAAGGAATAAATCATGTGCAACCCAATTAATTACAATATTAAATTATACATAACGTTACTTATAAAGGTTTGGACTCATCTAGATTTTTATACAATCCTCTCTGCAACTTCCATTAACTAAAACAACTTGTAATTTCCTCTAAGATACTGGTCGGCATGACAGCAACAAGCTCAACACAAGGCAACATGATCCTTTCTTGGAAAGTGAGAAAATATTTTGAAAGAATGAGCTTAAAATGTTAAATTAGTGATATTTTTAAAACATACTTTCCAAATACATTTGTTGCGTCACTGAAATTTTTAGCTATGTAGATACTGTGGCAATCCTAGTGACGCATGTCACATGGTGTCACTAATACTTTTAGAGGCATTTTTTCCGTTTTAGTAACGTTTTTTGTGCGTCACTAAAAACTCAATTTCTTATAGTGCATGCTTTAAATTAATGTATAATAGATGACATATAATTGTATGTTAATCTCCAAGAAGCAATAGATTAGATAGGCTTGTGATTTATGGTCGACAACAAAGAGTATTGTTTTATTGACGTAGGAAAAACCATATATTAGATTTCTATTGAGGCTTTTCCTGTTAGAAATTTATCCTAGCAAAATTTATCCTAGCGTAATCCCTAAAGAGTAATGTGGTTAGTTAACTTGATTATGTTGTTTTCATCTAATTAAATTCGCTAATTTTATATTTAAAACCATGGGTTAGTTTTTCTAATCAATTGGGCTTGGTAAGAAACTAAAAATCATTCATTGATAATTCGATTATCAAATTGCATCGGGTGAATTTCATTCTTCTAAGCTAGAATGTTTTGATTGATTGCATTTCTATCTTTATTTTTCTTGCACTTTATTTGTTTGAATCTCAAACCACGCCATCCCCTCCCCCATTTATCACTTTAACTAAATAATTAGCTTTGAGAAACTACTCCTTTGTGCTTTCCTGTGGATAGACTAGGTCTTGCCACTTGA

mRNA sequence

AGTGAAAGAACTTAATAGTCGTATTATAAAAAAAAGCGAACGATATAATCAGGAAAAGAGTTGGCCAGCATGGTGAAACCTATCCAGAATTTATAGAGTGGTTGCGCAAAGTGGATAATCAGCTTAGCAGCAACATACCGCAAGAAATAAACTGAAAATGAAGATGAAGATGGATGGGATAAGAAGGTTTTAAATCCGTCGTGCTATAACTTAGCCCAACGCCACCAACTGGGGAGACATACAAAGGAGCTAAATTTAATTATCCAACTTGTAGCCGAAGGAAAAGAGTTCATCAACGAATTTCACGCTCGTCACGAATTTGTAAACTAGGTCTTGCCACTTGA

Coding sequence (CDS)

AGTGAAAGAACTTAATAGTCGTATTATAAAAAAAAGCGAACGATATAATCAGGAAAAGAGTTGGCCAGCATGGTGAAACCTATCCAGAATTTATAGAGTGGTTGCGCAAAGTGGATAATCAGCTTAGCAGCAACATACCGCAAGAAATAAACTGAAAATGAAGATGAAGATGGATGGGATAAGAAGGTTTTAAATCCGTCGTGCTATAACTTAGCCCAACGCCACCAACTGGGGAGACATACAAAGGAGCTAAATTTAATTATCCAACTTGTAGCCGAAGGAAAAGAGTTCATCAACGAATTTCACGCTCGTCACGAATTTGTAAACTAGGTCTTGCCACTTGA

Protein sequence

SERT**SYYKKKRTI*SGKELASMVKPIQNL*SGCAKWIISLAATYRKK*TENEDEDGWDKKVLNPSCYNLAQRHQLGRHTKELNLIIQLVAEGKEFINEFHARHEFVN*VLPLX

Homology

[Close]

BLAST of Chy11G190840 vs. ExPASy TrEMBL
Match: A0A0A0LNH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433390 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.3e-17
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 52  ENEDEDGWDKKVLNPSCYNLAQRHQLGRHT-KELNLIIQLVAEGKEFINEFHARHEFVN* 111
           ENEDEDGWDKKV N SC+NLAQRHQLGR T KELNL IQ   +GKEFIN+FHARHEFV+ 
Sbjct: 51  ENEDEDGWDKKVFNGSCHNLAQRHQLGRQTKKELNLSIQ---QGKEFINQFHARHEFVSC 109

Query: 112 VL 113
           ++
Sbjct: 111 II 109

[Close]

BLAST of Chy11G190840 vs. NCBI nr
Match: KAE8652348.1 (hypothetical protein Csa_022105 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.99e-22
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 52  ENEDEDGWDKKVLNPSCYNLAQRHQLGRHTK-ELNLIIQLVAEGKEFINEFHARHEF 107
           ENEDEDGWDKKV N SC+NLAQRHQLGR TK ELNL IQ   +GKEFIN+FHARHEF
Sbjct: 51  ENEDEDGWDKKVFNGSCHNLAQRHQLGRQTKKELNLSIQ---QGKEFINQFHARHEF 104

The following BLAST results are available for this feature:

BLAST of Chy11G190840 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G190840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNH4	5.3e-17	75.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433390 PE=4 SV=1	[more]

BLAST of Chy11G190840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652348.1	1.99e-22	80.70	hypothetical protein Csa_022105 [Cucumis sativus]	[more]

BLAST of Chy11G190840 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G190840.1	Chy11G190840.1	mRNA