Chy11G190200 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G190200
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 4315177 .. 4316266 (-)
RNA-Seq Expression	Chy11G190200
Synteny	Chy11G190200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAACCCAAGAGTATTGGTGTGAGGGTGAACTTCATGGATCCAAGTTTGCAATGGAAGCCATTGCCTTCTCCACAAGCAAAATAGTAAGGATTTTGGTCTTTAAGCACAAACTCAAACCCATCTCCACTTCCCTGTGTTACATTTGCTAACATTTTGGCCTTTCCAAAATTACAATTGGCAAGGCTTCTCATGTTTGGTAGCAGATAAACATTATGAGGTGGAGTTGAACTATTTGGACGATCATATTTGAACACTACAAAAAAGGAAAAAAAAAAAACTTTCAGAATTAGTTTGGGAATGAAAAATTATCATATTAACCATGGAATTGAGCTTAAAAATTGGCTTACCAAGGATATCATTGACATAAAAGGGACCATTTTTGAGTGCCCAATCAGTGTAGTCGAAGCCAAGCTGCCATTGATTCGAACCGCCCACAATGATCTTTCTTGGACTTTGTGGGGTTGGTTGTGGTGAGGGTGGTAACGATGGTGATGGAGATGGCGGTGGTGGCAATGACGGCGGTGATGGTGGTATTGGTTGGAACGGTGGTGTACGTGGTCGTCGTGGTGGTGTTGGTGACACTATCGGTGGTGGTGGTGACACTATCGGTGGTGGTGGTGTTCGAGGTCTTCGTGATGGTGGTGGAGGCGATGATAGCATTGGCGGCGTTGGTGGTGGTGTTCGAGGACGTCGTGATCGTGGTGGTGGTGGTGTTCGAGGACTTTGTGATCGTGGTGGTGGTGGTGTTCGAGGACGTCGTGATGGCGGTGGTGGTGGTGGAAACTGTAATGATGGTGGTGTTAGATGACGTCTTGGTGGTGGTGGCGGCAACAGTGGACATCGTTGTGATGGTGGAGTTCGAAAACGTCGTGATGGTGGGGGTGGAAACCGTCGTGATGGCGGAATTCGTGGGTATCGTGATGGTGGTAGCCACCGTAATGGTGGTGACGGAGATCGCTTATGACAAGGTATGGAAGGCACGGTGCAATTTGGTCGTCCCCAAAACCAACGTCCATTATTGGCAGAGCATAGAGTTGAGATGCATGCCCAAATGAAAAGAATGATAAGTTTTGAACTGATGAAAGCCAT

mRNA sequence

TCAACCCAAGAGTATTGGTGTGAGGGTGAACTTCATGGATCCAAGTTTGCAATGGAAGCCATTGCCTTCTCCACAAGCAAAATAGTAAGGATTTTGGTCTTTAAGCACAAACTCAAACCCATCTCCACTTCCCTGTGTTACATTTGCTAACATTTTGGCCTTTCCAAAATTACAATTGGCAAGGCTTCTCATGTTTGGTAGCAGATAAACATTATGAGGTGGAGTTGAACTATTTGGACGATCATATTTGAACACAAGGATATCATTGACATAAAAGGGACCATTTTTGAGTGCCCAATCAGTGTAGTCGAAGCCAAGCTGCCATTGATTCGAACCGCCCACAATGATCTTTCTTGGACTTTGTGGGGTTGGTTGTGGTGAGGGTGGTAACGATGGTGATGGAGATGGCGGTGGTGGCAATGACGGCGGTGATGGTGGTATTGGTTGGAACGGTGGTGTACGTGGTCGTCGTGGTGGTGTTGGTGACACTATCGGTGGTGGTGGTGACACTATCGGTGGTGGTGGTGTTCGAGGTCTTCGTGATGGTGGTGGAGGCGATGATAGCATTGGCGGCGTTGGTGGTGGTGTTCGAGGACGTCGTGATCGTGGTGGTGGTGGTGACGTCGTGGTCTTGGTGGTGGTGGCGGCAACAGTGGACATCGTTGTGATGGTGGAGTTCGAAAACGTCGTGATGGTGGGGGTGGAAACCGTCGTGATGGCGGAATTCGTGGGTATCGTGATGGTGGTAGCCACCGTAATGGTGGTGACGGAGATCGCTTATGACAAGGTATGGAAGGCACGGTGCAATTTGGTCGTCCCCAAAACCAACGTCCATTATTGGCAGAGCATAGAGTTGAGATGCATGCCCAAATGAAAAGAATGATAAGTTTTGAACTGATGAAAGCCAT

Coding sequence (CDS)

TCAACCCAAGAGTATTGGTGTGAGGGTGAACTTCATGGATCCAAGTTTGCAATGGAAGCCATTGCCTTCTCCACAAGCAAAATAGTAAGGATTTTGGTCTTTAAGCACAAACTCAAACCCATCTCCACTTCCCTGTGTTACATTTGCTAACATTTTGGCCTTTCCAAAATTACAATTGGCAAGGCTTCTCATGTTTGGTAGCAGATAAACATTATGAGGTGGAGTTGAACTATTTGGACGATCATATTTGAACACAAGGATATCATTGACATAAAAGGGACCATTTTTGAGTGCCCAATCAGTGTAGTCGAAGCCAAGCTGCCATTGATTCGAACCGCCCACAATGATCTTTCTTGGACTTTGTGGGGTTGGTTGTGGTGAGGGTGGTAACGATGGTGATGGAGATGGCGGTGGTGGCAATGACGGCGGTGATGGTGGTATTGGTTGGAACGGTGGTGTACGTGGTCGTCGTGGTGGTGTTGGTGACACTATCGGTGGTGGTGGTGACACTATCGGTGGTGGTGGTGTTCGAGGTCTTCGTGATGGTGGTGGAGGCGATGATAGCATTGGCGGCGTTGGTGGTGGTGTTCGAGGACGTCGTGATCGTGGTGGTGGTGGTGACGTCGTGGTCTTGGTGGTGGTGGCGGCAACAGTGGACATCGTTGTGATGGTGGAGTTCGAAAACGTCGTGATGGTGGGGGTGGAAACCGTCGTGATGGCGGAATTCGTGGGTATCGTGATGGTGGTAGCCACCGTAATGGTGGTGACGGAGATCGCTTATGACAAGGTATGGAAGGCACGGTGCAATTTGGTCGTCCCCAAAACCAACGTCCATTATTGGCAGAGCATAGAGTTGAGATGCATGCCCAAATGAAAAGAATGATAAGTTTTGAACTGATGAAAGCCAT

Protein sequence

STQEYWCEGELHGSKFAMEAIAFSTSKIVRILVFKHKLKPISTSLCYIC*HFGLSKITIGKASHVW*QINIMRWS*TIWTIIFEHKDIIDIKGTIFECPISVVEAKLPLIRTAHNDLSWTLWGWLW*GW*RW*WRWRWWQ*RR*WWYWLERWCTWSSWWCW*HYRWWW*HYRWWWCSRSS*WWWRR**HWRRWWWCSRTS*SWWWW*RRGLGGGGGNSGHRCDGGVRKRRDGGGGNRRDGGIRGYRDGGSHRNGGDGDRL*QGMEGTVQFGRPQNQRPLLAEHRVEMHAQMKRMISFELMKAX

Homology

[Close]

BLAST of Chy11G190200 vs. ExPASy TrEMBL
Match: A0A0A0LKZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234590 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 209 RGLGGGGGNSGHRCDGGVRKRRDGGGGNRRDGGIRGYRDGGSHRNGGDGDRL 261
           RG GGGGGN GHRCDGGVR+RRDGGGGNRRDGG+RGYRDGGS RNGG  D L
Sbjct: 87  RGGGGGGGNRGHRCDGGVRRRRDGGGGNRRDGGVRGYRDGGSRRNGGGRDGL 138

[Close]

BLAST of Chy11G190200 vs. NCBI nr
Match: KAF5817320.1 (putative intermediate filament protein [Helianthus annuus])

HSP 1 Score: 62.4 bits (150), Expect = 3.92e-07
Identity = 56/139 (40.29%), Postives = 59/139 (42.45%), Query Frame = 0


Query: 119 WTLWGWLW*GW*RW*WRWRWWQ*RR*WWYWLERWCTWSSWWCW*HYRWWW*HYRWWWCSR 178
           W  W W W  W  W W W WW     WW+W   W  W  WW W  + WWW  + WWW   
Sbjct: 77  WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW 136

Query: 179 SS*WWWRR**HWRRWWWCSRTS*SWWWW*RRGLGGGGGNSGHRCDGGVRKRRDGGGGNRR 238
              WWW     W  WWW       WWWW   G GGGGG  G    GG      GGGG   
Sbjct: 137 WWWWWW-----WWWWWWWWWWWWWWWWWCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 196

Query: 239 DGGIRGYRDGGSHRNGGDG 257
            GG  G   GG    GG G
Sbjct: 197 GGGGGGGGGGGGGGGGGGG 210

The following BLAST results are available for this feature:

BLAST of Chy11G190200 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G190200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKZ5	1.6e-12	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234590 PE=4 SV=1	[more]

BLAST of Chy11G190200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5817320.1	3.92e-07	40.29	putative intermediate filament protein [Helianthus annuus]	[more]

BLAST of Chy11G190200 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G190200.1	Chy11G190200.1	mRNA