Chy11G187480 (gene) Cucumber (hystrix) v1

Overview
NameChy11G187480
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationchrH11: 1645647 .. 1646287 (-)
RNA-Seq ExpressionChy11G187480
SyntenyChy11G187480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTTCTCTCTCAAATATTCTACGGTTTGTTCCCGCCTCTACCTCTCATTCTTTCGTTTTCACTCTTTACCCACTCATCCTTCTGCTAACAACAGCACTTCTACCCACTCAAGGTTCTTCATGCCCGAATTATCCTCCAAGGATTGGTTTCTCAAAATATCACCCTTGGAAAATTGATCTCTTTTTCCTCTGTTTCTCAAGCTGGGGATCTTCACTGTGCCCAACTTGTTTTTGATCACCTTCTCCAACCCAATAAGTTTATGTTCAATTGCTTGATAAGGGGGTACTCCACTTCTCCACATCCAATCAATGCTATTCTTCTCTACGTTAAAATGATGCGATCTGGGTTTTTACCCAATCGATTTACTCTCCCTTTTGTACTCAAGGCTTGTGCCTCTCAACTTGCGTATTGGGAGGCTTTTGTTGTCCACTGTCAAGCTATTCGATTGGGGATGTTGTCTCATGTATATGTGCATAATGCTCTGATTAATGCTTATACTGTTTTTGGTTTTGTTCAATGTGCGTACCAAGTGTTTGATGAAATGTCTAATAGAACTCTGGTGTCCTGGAATTCGATGATTGGTGGGTACTTTAGGAATGGGCTTTGTAAGGAAGCGTTTTGTTGTTTCGAGAGATGA

mRNA sequence

ATGCTCTTCTCTCTCAAATATTCTACGCACTTCTACCCACTCAAGGTTCTTCATGCCCGAATTATCCTCCAAGGATTGGTTTCTCAAAATATCACCCTTGGAAAATTGATCTCTTTTTCCTCTGTTTCTCAAGCTGGGGATCTTCACTGTGCCCAACTTGTTTTTGATCACCTTCTCCAACCCAATAAGTTTATGTTCAATTGCTTGATAAGGGGGTACTCCACTTCTCCACATCCAATCAATGCTATTCTTCTCTACGTTAAAATGATGCGATCTGGGTTTTTACCCAATCGATTTACTCTCCCTTTTGTACTCAAGGCTTGTGCCTCTCAACTTGCGTATTGGGAGGCTTTTGTTGTCCACTGTCAAGCTATTCGATTGGGGATGTTGTCTCATGTATATGTGCATAATGCTCTGATTAATGCTTATACTGTTTTTGGTTTTGTTCAATGTGCGTACCAAGTGTTTGATGAAATGTCTAATAGAACTCTGGTGTCCTGGAATTCGATGATTGGTGGGTACTTTAGGAATGGGCTTTGTAAGGAAGCGTTTTGTTGTTTCGAGAGATGA

Coding sequence (CDS)

ATGCTCTTCTCTCTCAAATATTCTACGCACTTCTACCCACTCAAGGTTCTTCATGCCCGAATTATCCTCCAAGGATTGGTTTCTCAAAATATCACCCTTGGAAAATTGATCTCTTTTTCCTCTGTTTCTCAAGCTGGGGATCTTCACTGTGCCCAACTTGTTTTTGATCACCTTCTCCAACCCAATAAGTTTATGTTCAATTGCTTGATAAGGGGGTACTCCACTTCTCCACATCCAATCAATGCTATTCTTCTCTACGTTAAAATGATGCGATCTGGGTTTTTACCCAATCGATTTACTCTCCCTTTTGTACTCAAGGCTTGTGCCTCTCAACTTGCGTATTGGGAGGCTTTTGTTGTCCACTGTCAAGCTATTCGATTGGGGATGTTGTCTCATGTATATGTGCATAATGCTCTGATTAATGCTTATACTGTTTTTGGTTTTGTTCAATGTGCGTACCAAGTGTTTGATGAAATGTCTAATAGAACTCTGGTGTCCTGGAATTCGATGATTGGTGGGTACTTTAGGAATGGGCTTTGTAAGGAAGCGTTTTGTTGTTTCGAGAGATGA

Protein sequence

MLFSLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNKFMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEAFCCFER*
Homology
BLAST of Chy11G187480 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 0

Query: 14  LKVLHARIILQGLVSQNITLGKLISFSSVSQAGD-LHCAQLVFDHLLQPNKFMFNCLIRG 73
           LK +HAR++  GL+  +  + K +SF   S + D L  AQ+VFD   +P+ F++N +IRG
Sbjct: 30  LKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 89

Query: 74  YSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSH 133
           +S S  P  ++LLY +M+ S    N +T P +LKAC++  A+ E   +H Q  +LG  + 
Sbjct: 90  FSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEND 149

Query: 134 VYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEAFCCFER 190
           VY  N+LIN+Y V G  + A+ +FD +     VSWNS+I GY + G    A   F +
Sbjct: 150 VYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206

BLAST of Chy11G187480 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 66/176 (37.50%), Postives = 106/176 (60.23%), Query Frame = 0

Query: 14  LKVLHARIILQGLVSQNITLGKLISFSSVSQAGD-LHCAQLVFDHLLQPNKFMFNCLIRG 73
           L+++HA++I  GL + N  L KLI F  +S   + L  A  VF  + +PN  ++N + RG
Sbjct: 49  LRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRG 108

Query: 74  YSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSH 133
           ++ S  P++A+ LYV M+  G LPN +T PFVLK+CA   A+ E   +H   ++LG    
Sbjct: 109 HALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLD 168

Query: 134 VYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEAFCCFE 189
           +YVH +LI+ Y   G ++ A++VFD+  +R +VS+ ++I GY   G  + A   F+
Sbjct: 169 LYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 224

BLAST of Chy11G187480 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-25
Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 0

Query: 4   SLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFS-SVSQAGDLHCAQLVFDHLLQPN 63
           SLK       LK+ H  +  QGL +   T+ KL++ S  +     L  A+ VF++     
Sbjct: 38  SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97

Query: 64  K-FMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVH 123
             FM+N LIRGY++S     AILL+++MM SG  P+++T PF L ACA   A      +H
Sbjct: 98  TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157

Query: 124 CQAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCK 183
              +++G    ++V N+L++ Y   G +  A +VFDEMS R +VSW SMI GY R    K
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

Query: 184 EAFCCFER 190
           +A   F R
Sbjct: 218 DAVDLFFR 225

BLAST of Chy11G187480 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-24
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 0

Query: 14  LKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNKFMFNCLIRGY 73
           L  +H   I  G+ + +   GKLI   ++S +  L  A+ +     +P+ FMFN L+RGY
Sbjct: 21  LTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGY 80

Query: 74  STSPHPINAILLYVKMMRSGFL-PNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSH 133
           S S  P N++ ++V+MMR GF+ P+ F+  FV+KA  +  +    F +HCQA++ G+ SH
Sbjct: 81  SESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESH 140

Query: 134 VYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFR 177
           ++V   LI  Y   G V+ A +VFDEM    LV+WN++I   FR
Sbjct: 141 LFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184

BLAST of Chy11G187480 vs. ExPASy Swiss-Prot
Match: Q9ZQA1 (Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E44 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.2e-24
Identity = 67/186 (36.02%), Postives = 96/186 (51.61%), Query Frame = 0

Query: 2   LFSLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQP 61
           L  LK  +    L  +H +I L  L + +  + +L+  SS+S A DL  A+ +  H    
Sbjct: 17  LIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDS 76

Query: 62  NKFMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVH 121
               +N L RGYS+S  P+ +I +Y +M R G  PN+ T PF+LKACAS L       + 
Sbjct: 77  TPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQ 136

Query: 122 CQAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCK 181
            + ++ G    VYV N LI+ Y        A +VFDEM+ R +VSWNS++     NG   
Sbjct: 137 VEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLN 196

Query: 182 EAFCCF 188
             F CF
Sbjct: 197 LVFECF 202

BLAST of Chy11G187480 vs. ExPASy TrEMBL
Match: A0A5A7TQY7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00460 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.7e-90
Identity = 168/185 (90.81%), Postives = 171/185 (92.43%), Query Frame = 0

Query: 3   FSLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPN 62
           FSL+       LKVLHA+IILQGLVSQNITLGKLISF SVSQAGDL  AQLVFDHLLQPN
Sbjct: 58  FSLEKCASMRELKVLHAQIILQGLVSQNITLGKLISFCSVSQAGDLQYAQLVFDHLLQPN 117

Query: 63  KFMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 122
           KFMFNCLIRGYSTSPHPINAILLY+KMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC
Sbjct: 118 KFMFNCLIRGYSTSPHPINAILLYIKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 177

Query: 123 QAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 182
            AIRLGMLSHVYVHNALINAY VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE
Sbjct: 178 HAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 237

Query: 183 AFCCF 188
           AF  F
Sbjct: 238 AFLLF 242

BLAST of Chy11G187480 vs. ExPASy TrEMBL
Match: A0A1S3C6H9 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103497406 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.7e-90
Identity = 168/185 (90.81%), Postives = 171/185 (92.43%), Query Frame = 0

Query: 3   FSLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPN 62
           FSL+       LKVLHA+IILQGLVSQNITLGKLISF SVSQAGDL  AQLVFDHLLQPN
Sbjct: 58  FSLEKCASMRELKVLHAQIILQGLVSQNITLGKLISFCSVSQAGDLQYAQLVFDHLLQPN 117

Query: 63  KFMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 122
           KFMFNCLIRGYSTSPHPINAILLY+KMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC
Sbjct: 118 KFMFNCLIRGYSTSPHPINAILLYIKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 177

Query: 123 QAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 182
            AIRLGMLSHVYVHNALINAY VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE
Sbjct: 178 HAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 237

Query: 183 AFCCF 188
           AF  F
Sbjct: 238 AFLLF 242

BLAST of Chy11G187480 vs. ExPASy TrEMBL
Match: A0A0A0LLZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G286520 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.2e-88
Identity = 165/185 (89.19%), Postives = 169/185 (91.35%), Query Frame = 0

Query: 3   FSLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPN 62
           FSL+  +    LKVLHARIILQGLVSQNITLGKLISF SVSQ GDLH A LVFDHL QPN
Sbjct: 49  FSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPN 108

Query: 63  KFMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 122
           KFMFNCLIRGYSTSPHPINAI LYV+MMRSGFLPNRFTLPFVLK+CASQLAYWEAFVVHC
Sbjct: 109 KFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHC 168

Query: 123 QAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 182
           QAIRLGMLSHVYVHNALINAY VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCK 
Sbjct: 169 QAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKG 228

Query: 183 AFCCF 188
           AF  F
Sbjct: 229 AFLLF 233

BLAST of Chy11G187480 vs. ExPASy TrEMBL
Match: A0A6J1EJQ7 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111434951 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 144/184 (78.26%), Postives = 158/184 (85.87%), Query Frame = 0

Query: 4   SLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNK 63
           SL+  +    LKVLHA+IILQGLVS+ +TLGKL+SF +VSQAGDLH AQLVFDH LQPNK
Sbjct: 46  SLERCSSMRQLKVLHAQIILQGLVSETLTLGKLVSFCAVSQAGDLHYAQLVFDHHLQPNK 105

Query: 64  FMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQ 123
           FMFNCLIRGYSTS HPI AI+LY KMMRSGFLPN+FTLPFVLKACASQLAYWE  +VHC 
Sbjct: 106 FMFNCLIRGYSTSQHPIKAIVLYFKMMRSGFLPNQFTLPFVLKACASQLAYWEVLLVHCH 165

Query: 124 AIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEA 183
            IRLG+LSHV V NALINAY V GFVQCA Q+FDEMS+RTLVSWNS+IGGY RNG CKEA
Sbjct: 166 TIRLGILSHVCVQNALINAYAVCGFVQCARQLFDEMSHRTLVSWNSIIGGYSRNGFCKEA 225

Query: 184 FCCF 188
           F  F
Sbjct: 226 FLLF 229

BLAST of Chy11G187480 vs. ExPASy TrEMBL
Match: A0A6J1I2L8 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470348 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 9.1e-75
Identity = 143/184 (77.72%), Postives = 157/184 (85.33%), Query Frame = 0

Query: 4   SLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNK 63
           SL+  +    LKVLHA+IILQGLVS+ +TLGKL+SF +VSQAGDL  AQLVFDH LQPNK
Sbjct: 46  SLERCSSMRQLKVLHAQIILQGLVSETLTLGKLVSFCAVSQAGDLPYAQLVFDHHLQPNK 105

Query: 64  FMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQ 123
           FMFNCLIRGYSTS HPINAI LY KMMRSGFLPN+FTLPFVLKACASQLAYWE  +VHC 
Sbjct: 106 FMFNCLIRGYSTSQHPINAIFLYFKMMRSGFLPNQFTLPFVLKACASQLAYWEVLLVHCH 165

Query: 124 AIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEA 183
           AIRLG+LSHV V NALIN Y V GFVQCA Q+FDEMS++TLVSWNS+IGGY RNG CKEA
Sbjct: 166 AIRLGILSHVCVQNALINVYAVCGFVQCARQLFDEMSHKTLVSWNSIIGGYSRNGFCKEA 225

Query: 184 FCCF 188
           F  F
Sbjct: 226 FLLF 229

BLAST of Chy11G187480 vs. NCBI nr
Match: XP_008457803.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis melo])

HSP 1 Score: 337 bits (864), Expect = 1.16e-109
Identity = 168/187 (89.84%), Postives = 171/187 (91.44%), Query Frame = 0

Query: 3   FSLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPN 62
           FSL+       LKVLHA+IILQGLVSQNITLGKLISF SVSQAGDL  AQLVFDHLLQPN
Sbjct: 58  FSLEKCASMRELKVLHAQIILQGLVSQNITLGKLISFCSVSQAGDLQYAQLVFDHLLQPN 117

Query: 63  KFMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 122
           KFMFNCLIRGYSTSPHPINAILLY+KMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC
Sbjct: 118 KFMFNCLIRGYSTSPHPINAILLYIKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 177

Query: 123 QAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 182
            AIRLGMLSHVYVHNALINAY VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE
Sbjct: 178 HAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 237

Query: 183 AFCCFER 189
           AF  F  
Sbjct: 238 AFLLFRE 244

BLAST of Chy11G187480 vs. NCBI nr
Match: XP_004148060.2 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis sativus])

HSP 1 Score: 328 bits (841), Expect = 3.77e-109
Identity = 162/176 (92.05%), Postives = 164/176 (93.18%), Query Frame = 0

Query: 14  LKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNKFMFNCLIRGY 73
           LKVLHARIILQGLVSQNITLGKLISF SVSQ GDLH A LVFDHL QPNKFMFNCLIRGY
Sbjct: 4   LKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGY 63

Query: 74  STSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSHV 133
           STSPHPINAI LYV+MMRSGFLPNRFTLPFVLK+CASQLAYWEAFVVHCQAIRLGMLSHV
Sbjct: 64  STSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHV 123

Query: 134 YVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEAFCCFER 189
           YVHNALINAY VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCK AF  F  
Sbjct: 124 YVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFRE 179

BLAST of Chy11G187480 vs. NCBI nr
Match: KAA0045802.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99480.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 337 bits (864), Expect = 7.23e-109
Identity = 168/187 (89.84%), Postives = 171/187 (91.44%), Query Frame = 0

Query: 3   FSLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPN 62
           FSL+       LKVLHA+IILQGLVSQNITLGKLISF SVSQAGDL  AQLVFDHLLQPN
Sbjct: 58  FSLEKCASMRELKVLHAQIILQGLVSQNITLGKLISFCSVSQAGDLQYAQLVFDHLLQPN 117

Query: 63  KFMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 122
           KFMFNCLIRGYSTSPHPINAILLY+KMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC
Sbjct: 118 KFMFNCLIRGYSTSPHPINAILLYIKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHC 177

Query: 123 QAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 182
            AIRLGMLSHVYVHNALINAY VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE
Sbjct: 178 HAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKE 237

Query: 183 AFCCFER 189
           AF  F  
Sbjct: 238 AFLLFRE 244

BLAST of Chy11G187480 vs. NCBI nr
Match: XP_038900653.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 301 bits (770), Expect = 2.19e-95
Identity = 150/186 (80.65%), Postives = 161/186 (86.56%), Query Frame = 0

Query: 4   SLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNK 63
           SL+  +    LKVLHA+IILQGLVS+ +TLGKL+SF SVSQAGDLH AQLVFDHLLQPNK
Sbjct: 50  SLERCSSMRELKVLHAQIILQGLVSEILTLGKLVSFCSVSQAGDLHYAQLVFDHLLQPNK 109

Query: 64  FMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQ 123
           FMFNCLIRGYS S HPINAI LY KM+RSGFLPN+FTLPFVLKACASQLAYWEA  VHC 
Sbjct: 110 FMFNCLIRGYSVSQHPINAIFLYFKMLRSGFLPNQFTLPFVLKACASQLAYWEALSVHCH 169

Query: 124 AIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEA 183
           AIRLG+LSHV V NALIN Y VFGFVQCA Q+FDEMSNRTLVSWNSMIGGY RNGLCKEA
Sbjct: 170 AIRLGILSHVCVQNALINVYAVFGFVQCARQLFDEMSNRTLVSWNSMIGGYSRNGLCKEA 229

Query: 184 FCCFER 189
           F  F+ 
Sbjct: 230 FLLFQE 235

BLAST of Chy11G187480 vs. NCBI nr
Match: KAG6571425.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290 bits (741), Expect = 3.47e-91
Identity = 144/185 (77.84%), Postives = 158/185 (85.41%), Query Frame = 0

Query: 4   SLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNK 63
           SL+  +    LKVLHA+IILQGLVS+ +TLGKL+SF +VSQAGDLH AQLVFDH LQPNK
Sbjct: 38  SLERCSSMRQLKVLHAQIILQGLVSETLTLGKLVSFCAVSQAGDLHYAQLVFDHHLQPNK 97

Query: 64  FMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQ 123
           FMFNCLIRGYSTS HPI AI+LY KMMRSGFLPN+FTLPFVLKACASQLAYWE  +VHC 
Sbjct: 98  FMFNCLIRGYSTSQHPIKAIVLYFKMMRSGFLPNQFTLPFVLKACASQLAYWEVLLVHCH 157

Query: 124 AIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEA 183
            IRLG+LSHV V NALINAY V GFVQCA Q+FDEMS+RTLVSWNS+IGGY RNG CKEA
Sbjct: 158 TIRLGILSHVCVQNALINAYAVCGFVQCARQLFDEMSHRTLVSWNSIIGGYSRNGFCKEA 217

Query: 184 FCCFE 188
           F  F 
Sbjct: 218 FLLFR 222

BLAST of Chy11G187480 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 0

Query: 14  LKVLHARIILQGLVSQNITLGKLISFSSVSQAGD-LHCAQLVFDHLLQPNKFMFNCLIRG 73
           LK +HAR++  GL+  +  + K +SF   S + D L  AQ+VFD   +P+ F++N +IRG
Sbjct: 30  LKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 89

Query: 74  YSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSH 133
           +S S  P  ++LLY +M+ S    N +T P +LKAC++  A+ E   +H Q  +LG  + 
Sbjct: 90  FSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEND 149

Query: 134 VYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEAFCCFER 190
           VY  N+LIN+Y V G  + A+ +FD +     VSWNS+I GY + G    A   F +
Sbjct: 150 VYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206

BLAST of Chy11G187480 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-27
Identity = 66/176 (37.50%), Postives = 106/176 (60.23%), Query Frame = 0

Query: 14  LKVLHARIILQGLVSQNITLGKLISFSSVSQAGD-LHCAQLVFDHLLQPNKFMFNCLIRG 73
           L+++HA++I  GL + N  L KLI F  +S   + L  A  VF  + +PN  ++N + RG
Sbjct: 49  LRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRG 108

Query: 74  YSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSH 133
           ++ S  P++A+ LYV M+  G LPN +T PFVLK+CA   A+ E   +H   ++LG    
Sbjct: 109 HALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLD 168

Query: 134 VYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKEAFCCFE 189
           +YVH +LI+ Y   G ++ A++VFD+  +R +VS+ ++I GY   G  + A   F+
Sbjct: 169 LYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 224

BLAST of Chy11G187480 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-26
Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 0

Query: 4   SLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFS-SVSQAGDLHCAQLVFDHLLQPN 63
           SLK       LK+ H  +  QGL +   T+ KL++ S  +     L  A+ VF++     
Sbjct: 38  SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97

Query: 64  K-FMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVH 123
             FM+N LIRGY++S     AILL+++MM SG  P+++T PF L ACA   A      +H
Sbjct: 98  TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157

Query: 124 CQAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCK 183
              +++G    ++V N+L++ Y   G +  A +VFDEMS R +VSW SMI GY R    K
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

Query: 184 EAFCCFER 190
           +A   F R
Sbjct: 218 DAVDLFFR 225

BLAST of Chy11G187480 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-26
Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 0

Query: 4   SLKYSTHFYPLKVLHARIILQGLVSQNITLGKLISFS-SVSQAGDLHCAQLVFDHLLQPN 63
           SLK       LK+ H  +  QGL +   T+ KL++ S  +     L  A+ VF++     
Sbjct: 38  SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97

Query: 64  K-FMFNCLIRGYSTSPHPINAILLYVKMMRSGFLPNRFTLPFVLKACASQLAYWEAFVVH 123
             FM+N LIRGY++S     AILL+++MM SG  P+++T PF L ACA   A      +H
Sbjct: 98  TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157

Query: 124 CQAIRLGMLSHVYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCK 183
              +++G    ++V N+L++ Y   G +  A +VFDEMS R +VSW SMI GY R    K
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

Query: 184 EAFCCFER 190
           +A   F R
Sbjct: 218 DAVDLFFR 225

BLAST of Chy11G187480 vs. TAIR 10
Match: AT1G74630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-25
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 0

Query: 14  LKVLHARIILQGLVSQNITLGKLISFSSVSQAGDLHCAQLVFDHLLQPNKFMFNCLIRGY 73
           L  +H   I  G+ + +   GKLI   ++S +  L  A+ +     +P+ FMFN L+RGY
Sbjct: 21  LTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGY 80

Query: 74  STSPHPINAILLYVKMMRSGFL-PNRFTLPFVLKACASQLAYWEAFVVHCQAIRLGMLSH 133
           S S  P N++ ++V+MMR GF+ P+ F+  FV+KA  +  +    F +HCQA++ G+ SH
Sbjct: 81  SESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESH 140

Query: 134 VYVHNALINAYTVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFR 177
           ++V   LI  Y   G V+ A +VFDEM    LV+WN++I   FR
Sbjct: 141 LFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FJY73.1e-2738.42Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX... [more]
Q9LN012.6e-2637.50Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9LUJ24.9e-2537.77Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
Q9CA545.4e-2438.41Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX... [more]
Q9ZQA19.2e-2436.02Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A5A7TQY77.7e-9090.81Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3C6H97.7e-9090.81pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc... [more]
A0A0A0LLZ34.2e-8889.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G286520 PE=4 SV=1[more]
A0A6J1EJQ71.1e-7578.26pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc... [more]
A0A6J1I2L89.1e-7577.72pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc... [more]
Match NameE-valueIdentityDescription
XP_008457803.11.16e-10989.84PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-... [more]
XP_004148060.23.77e-10992.05pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis sa... [more]
KAA0045802.17.23e-10989.84pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99480... [more]
XP_038900653.12.19e-9580.65pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benin... [more]
KAG6571425.13.47e-9177.84Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
AT5G66520.12.2e-2838.42Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G08070.11.8e-2737.50Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G22690.13.5e-2637.77CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012... [more]
AT3G22690.23.5e-2637.77INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro... [more]
AT1G74630.13.8e-2538.41Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 134..161
e-value: 0.0023
score: 16.0
coord: 165..188
e-value: 3.3E-4
score: 18.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 135..161
e-value: 9.9E-4
score: 19.2
coord: 165..189
e-value: 2.4E-6
score: 27.4
coord: 64..94
e-value: 0.14
score: 12.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 62..96
score: 9.437737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 163..189
score: 8.527949
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 116..189
e-value: 2.8E-12
score: 48.3
coord: 17..115
e-value: 2.3E-10
score: 42.1
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 14..188
NoneNo IPR availablePANTHERPTHR24015:SF1985OS09G0555400 PROTEINcoord: 14..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G187480.1Chy11G187480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding