Chy11G187330 (gene) Cucumber (hystrix) v1

Overview
NameChy11G187330
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionC2H2-type domain-containing protein
LocationchrH11: 1530396 .. 1530875 (-)
RNA-Seq ExpressionChy11G187330
SyntenyChy11G187330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACAAATCTCTTCCATATAACCTTCGACTTAGGAAAGATCACAAGTCTTCTTCTCCAACCGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGTTTCATTATCCTTATTCTTCTTTCTTTATTCATTATTATTGTTTGAGTTATTATTAATTGTTAATATCAAATTTAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGTTCACACCATTGTAAAGTAAGCTTTTTTTTTTTTTAGTTTTTAATTTTTTTGAAATTTTGATATATTGATAAGTTTATTATAATAACTTTTTTTAGCAGAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGAAATTTTGGGAGAGAACAAATCATTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGC

mRNA sequence

ATGGATGACAAATCTCTTCCATATAACCTTCGACTTAGGAAAGATCACAAGTCTTCTTCTCCAACCGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGTTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGAAATTTTGGGAGAGAACAAATCATTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGC

Coding sequence (CDS)

ATGGATGACAAATCTCTTCCATATAACCTTCGACTTAGGAAAGATCACAAGTCTTCTTCTCCAACCGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGTTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGAAATTTTGGGAGAGAACAAATCATTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGC

Protein sequence

MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCSFDIESSLSSHHCKNKNEREAMEIEGHEILGENKSFRKKSRKGVPRRX
Homology
BLAST of Chy11G187330 vs. ExPASy TrEMBL
Match: A0A0A0LQ06 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.0e-52
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHEILGENKSFRKKSRKGVPRR 107
           FDIESSLSSHHCKNKNEREAMEIEGH ILGENKSFRKKSRKGVPRR
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 106

BLAST of Chy11G187330 vs. ExPASy TrEMBL
Match: A0A6J1EMR9 (uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC111434950 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.0e-22
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHEILGENKSFRKKSRKGVPRR 107
           SFD++ SL SHHCK  NK+EREA E E  E LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTR 103

BLAST of Chy11G187330 vs. ExPASy TrEMBL
Match: A0A6J1D739 (uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017959 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSK-THKHDRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKSLPYNLRLR   K+S+PTE SK   KH+RDFQEK  ++      + ++ RCEKCGC
Sbjct: 1   MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGC 60

Query: 61  SFDIESSLSSHHCKNKNEREAMEIEGH---EILGEN----KSFRKKSRKGVPRR 107
            F IE SL SHHCK KN+     +E     E+L +N    KSFRK+SRKG+P R
Sbjct: 61  RFGIEISLHSHHCKCKNKMSEEGMENQVVPEMLDQNNNNKKSFRKRSRKGIPTR 105

BLAST of Chy11G187330 vs. NCBI nr
Match: KAE8651931.1 (hypothetical protein Csa_006531, partial [Cucumis sativus])

HSP 1 Score: 211 bits (536), Expect = 1.28e-68
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHEILGENKSFRKKSRKGVPRR 106
           FDIESSLSSHHCKNKNEREAMEIEGH ILGENKSFRKKSRKGVPRR
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 106

BLAST of Chy11G187330 vs. NCBI nr
Match: KAG6571418.1 (hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (282), Expect = 6.57e-30
Identity = 63/109 (57.80%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCKNKN--EREAMEIEGHEILGENKSFRKKSRKGVPRR 106
           SFD++ SL SHHCKN N  E+EAME E  E LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTR 103

BLAST of Chy11G187330 vs. NCBI nr
Match: XP_023511836.1 (uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112 bits (281), Expect = 9.33e-30
Identity = 63/109 (57.80%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCKNKN--EREAMEIEGHEILGENKSFRKKSRKGVPRR 106
           SFD++ SL SHHCKN N  E+EAME E  E LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTR 103

BLAST of Chy11G187330 vs. NCBI nr
Match: KAG7011182.1 (hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111 bits (278), Expect = 2.67e-29
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCKNKN--EREAMEIEGHEILGENKSFRKKSRKGVPRR 106
           SFD++ SL SHHCKN N  E+EAME E  E LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTR 103

BLAST of Chy11G187330 vs. NCBI nr
Match: XP_022928048.1 (uncharacterized protein LOC111434950 [Cucurbita moschata])

HSP 1 Score: 111 bits (278), Expect = 2.67e-29
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHEILGENKSFRKKSRKGVPRR 106
           SFD++ SL SHHCK  NK+EREA E E  E LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTR 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ068.0e-5299.06C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 P... [more]
A0A6J1EMR95.0e-2256.88uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1D7399.9e-1854.39uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
KAE8651931.11.28e-6899.06hypothetical protein Csa_006531, partial [Cucumis sativus][more]
KAG6571418.16.57e-3057.80hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023511836.19.33e-3057.80uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo][more]
KAG7011182.12.67e-2956.88hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022928048.12.67e-2956.88uncharacterized protein LOC111434950 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..106
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 52..79
score: 10.325359

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G187330.1Chy11G187330.1mRNA