Chy11G186280 (gene) Cucumber (hystrix) v1

Overview
NameChy11G186280
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCoiled-coil domain-containing protein 18, putative isoform 2
LocationchrH11: 528417 .. 528914 (+)
RNA-Seq ExpressionChy11G186280
SyntenyChy11G186280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCAAATCCAATTCGCAAGAGTAAGTCTCTCTCTCTCTCTTTCAAAATTATTTTCACTATTTTATATTTGTTTGCTTTATTTTTAGATTTAGTGATTGAATTTGGTGTTTTATATATATATATACATATATATATAGCTCATCATTATTTTTTCTGAATTATGATCAATTTGGATTAATATATATTTCAGGAAGCAGCACTTTATGTAATGAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGTAATTACTATTAATTAGATACAAATATAAAAATTATTTTTGGTATTACCCAATATATATAATTTGAGGTGTGAATAAATTGGGTGGAAAATAATGGGTGCAGGGCTTACAACCAGTGGAATGTAAAGCAATTATGGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAGATTGATGAGTCGTTACCACCTTTTTATCAACTTAGAGACATTGTCTCTGCCCCTTTCTAG

mRNA sequence

ATGCATCAAATCCAATTCGCAAGAGAAGCAGCACTTTATGTAATGAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGGCTTACAACCAGTGGAATGTAAAGCAATTATGGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAGATTGATGAGTCGTTACCACCTTTTTATCAACTTAGAGACATTGTCTCTGCCCCTTTCTAG

Coding sequence (CDS)

ATGCATCAAATCCAATTCGCAAGAGAAGCAGCACTTTATGTAATGAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGGCTTACAACCAGTGGAATGTAAAGCAATTATGGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAGATTGATGAGTCGTTACCACCTTTTTATCAACTTAGAGACATTGTCTCTGCCCCTTTCTAG

Protein sequence

MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIMEDKDSIMKNWYHDEEIDESLPPFYQLRDIVSAPF*
Homology
BLAST of Chy11G186280 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIMEDKDSIMKNWYHDEEIDESL 60
          MHQIQFAREAALYVMNT TIEEAMKIFTEGLQPVECKAIMEDKDSI+KNWYHDEEIDESL
Sbjct: 19 MHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMEDKDSIVKNWYHDEEIDESL 78

Query: 61 PPFYQLRDIVSAPF 75
           PFYQLRDIVSAPF
Sbjct: 79 QPFYQLRDIVSAPF 92

BLAST of Chy11G186280 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.7e-27
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIM-EDKDSIMKNWYHDEEIDES 60
          M+QIQFAREAALYV+NTTTIEEAMKIFTEGL+PVECKAI+ EDKDSIMKNWYHDEEIDE 
Sbjct: 19 MNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDKDSIMKNWYHDEEIDE- 78

Query: 61 LPPFYQLRDIVSAPF 75
          L PF QLRDIVSAPF
Sbjct: 79 LQPFCQLRDIVSAPF 92

BLAST of Chy11G186280 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-20
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIMEDKDSIMKNWYHDEEIDESL 60
          MHQIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK I ED+DS M+N  H+EE+DE L
Sbjct: 19 MHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPI-EDRDSSMQNCCHEEEVDE-L 78

Query: 61 PPFYQLRDIVSAPF 75
          P FY+L DIVSAPF
Sbjct: 79 PSFYRLPDIVSAPF 90

BLAST of Chy11G186280 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.4e-16
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIME-DKDSIMKNWYHDEEIDES 60
          MHQIQFAREAALY++NTTTI+EAM+IFTEGL+ VECKA  + + +   K  Y++EE+ + 
Sbjct: 24 MHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDRNINGRKKQVYYEEELSD- 83

Query: 61 LPPFYQLRDIVSAPF 75
          L P Y+ RDIVSAPF
Sbjct: 84 LEPLYRFRDIVSAPF 97

BLAST of Chy11G186280 vs. ExPASy TrEMBL
Match: A0A2G9GJS3 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21929 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPV--------ECKAIMEDKDSIMKNWYH 60
          +HQI +AREAA+YV+NT +IEEA++IFTEGL+PV         C A   +++   K + H
Sbjct: 21 IHQIDYAREAAMYVVNTRSIEEALRIFTEGLEPVARCAESGQRCHAQEREEEQQQKQYSH 80

Query: 61 DEEIDESLPPFYQLRDIVSAPF 75
           ++ +  +P    +RDIVSAPF
Sbjct: 81 KDQRNIRIP---NIRDIVSAPF 99

BLAST of Chy11G186280 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus])

HSP 1 Score: 149 bits (376), Expect = 5.46e-45
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIMEDKDSIMKNWYHDEEIDESL 60
          MHQIQFAREAALYVMNT TIEEAMKIFTEGLQPVECKAIMEDKDSI+KNWYHDEEIDESL
Sbjct: 19 MHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMEDKDSIVKNWYHDEEIDESL 78

Query: 61 PPFYQLRDIVSAPF 74
           PFYQLRDIVSAPF
Sbjct: 79 QPFYQLRDIVSAPF 92

BLAST of Chy11G186280 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 131 bits (330), Expect = 5.69e-38
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIM-EDKDSIMKNWYHDEEIDES 60
          M+QIQFAREAALYV+NTTTIEEAMKIFTEGL+PVECKAI+ EDKDSIMKNWYHDEEIDE 
Sbjct: 19 MNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDKDSIMKNWYHDEEIDE- 78

Query: 61 LPPFYQLRDIVSAPF 74
          L PF QLRDIVSAPF
Sbjct: 79 LQPFCQLRDIVSAPF 92

BLAST of Chy11G186280 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida])

HSP 1 Score: 119 bits (297), Expect = 5.78e-33
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIMEDKDSIMKNWYHDEEIDESL 60
          MHQIQFAREAALYV+NTTTIEEAMKIFTEGLQPVECKAI +DKDSIM N+YH+EE DE L
Sbjct: 19 MHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-QDKDSIMGNYYHEEEDDE-L 78

Query: 61 PPFYQLRDIVSAPF 74
             YQ RDIVSAPF
Sbjct: 79 QSLYQPRDIVSAPF 90

BLAST of Chy11G186280 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 hypothetical protein SDJN02_27917, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118 bits (296), Expect = 8.45e-33
Identity = 55/74 (74.32%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIMEDKDSIMKNWYHDEEIDESL 60
          M+QIQFAREAALYVMNTT++EEA+KIFTEGL+ VECKAI ++ +SIM+NW+H++E DE L
Sbjct: 19 MNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADE-L 78

Query: 61 PPFYQLRDIVSAPF 74
          PP YQLRDIV+APF
Sbjct: 79 PPLYQLRDIVTAPF 91

BLAST of Chy11G186280 vs. NCBI nr
Match: KAG6571348.1 (hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (292), Expect = 4.61e-32
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1   MHQIQFAREAALYVMNTTTIEEAMKIFTEGLQPVECKAIMEDKDSIMKNWYHDEEIDESL 60
           M+QIQFAREAALYVMNTT++EEA+KIFTEGL+  ECKAI ++ +SIM+NW+H++E DE L
Sbjct: 29  MNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDEDESIMENWFHEQEADE-L 88

Query: 61  PPFYQLRDIVSAPF 74
           PP YQLRDIV+APF
Sbjct: 89  PPLYQLRDIVTAPF 101

BLAST of Chy11G186280 vs. TAIR 10
Match: AT4G33467.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 1   MHQIQFAREAALYVMNTTTIEEAMKIFT----EGLQPVE-----CKAIMEDKDSIMKNWY 60
           + Q++ ARE ALYVM T T+EEAM IFT    EGL+  E     C  + +++D    + Y
Sbjct: 25  LDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRASEERGGRCINLKDEEDD---DDY 84

Query: 61  HDEEIDESLPPFYQLRDIVSAPF 75
            DE +    P  +   DI +APF
Sbjct: 85  EDERMMFMSPHAW---DIHTAPF 101

BLAST of Chy11G186280 vs. TAIR 10
Match: AT4G33467.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.5e-04
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 1   MHQIQFAREAALYVMNTTTIEEAMKIFT-----EGLQPVE-----CKAIMEDKDSIMKNW 60
           + Q++ ARE ALYVM T T+EEAM IFT     EGL+  E     C  + +++D    + 
Sbjct: 25  LDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEERGGRCINLKDEEDD---DD 84

Query: 61  YHDEEIDESLPPFYQLRDIVSAPF 75
           Y DE +    P  +   DI +APF
Sbjct: 85  YEDERMMFMSPHAW---DIHTAPF 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ891.7e-3295.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1[more]
A0A1S3CDH23.7e-2789.33uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=... [more]
A0A6J1G8873.3e-2074.32uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC1114516... [more]
A0A6J1DBC18.4e-1662.67uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A2G9GJS34.5e-0945.12Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21929 P... [more]
Match NameE-valueIdentityDescription
XP_011649401.15.46e-4595.95uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical ... [more]
XP_008460897.15.69e-3889.33PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo][more]
XP_038902606.15.78e-3383.78uncharacterized protein LOC120089256 [Benincasa hispida][more]
XP_023512402.18.45e-3374.32uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 ... [more]
KAG6571348.14.61e-3272.97hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT4G33467.21.9e-0439.76unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
AT4G33467.12.5e-0439.29unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34808EXPRESSED PROTEINcoord: 1..74
NoneNo IPR availablePANTHERPTHR34808:SF2EXPRESSED PROTEINcoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G186280.1Chy11G186280.1mRNA