Chy10G183500 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G183500
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	VQ domain-containing protein
Location	chrH10: 16454590 .. 16455021 (+)
RNA-Seq Expression	Chy10G183500
Synteny	Chy10G183500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCACCAAAATCTTCCGAAATCAATGGCCCTCGCCCTTCTCCTCTCTTAATCCACAACGATTCTCGTCTTATTCGTAAGCCCCCCCAGCTCCGGCAGCCACTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCTAAGGATTTCATGGCATTGGTTCAACGCCTCACTGGCTGCAACCCACCACCGCCGCTGCCGCTGCCGTCTGACAAACCCTCCTTGTCGGAGAGAAATTTGAACGACAACGATTCATCGTCGGGTGTGACGACGGAGGAGGATATTAATGAAAAACAGAGTAATTGTTCTGTTCTTAAATATTCTTCTCATGATGTTACGACGCCGTTTTCCTCCCCTGCTTTCCTTTGCTCCTCCTTATCCCCTTCTTTCATGGACTTTCTTAAAGCCCTCCCTGAATTTTAA

mRNA sequence

ATGAGCCCACCAAAATCTTCCGAAATCAATGGCCCTCGCCCTTCTCCTCTCTTAATCCACAACGATTCTCGTCTTATTCGTAAGCCCCCCCAGCTCCGGCAGCCACTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCTAAGGATTTCATGGCATTGGTTCAACGCCTCACTGGCTGCAACCCACCACCGCCGCTGCCGCTGCCGTCTGACAAACCCTCCTTGTCGGAGAGAAATTTGAACGACAACGATTCATCGTCGGGTGTGACGACGGAGGAGGATATTAATGAAAAACAGAGTAATTGTTCTGTTCTTAAATATTCTTCTCATGATGTTACGACGCCGTTTTCCTCCCCTGCTTTCCTTTGCTCCTCCTTATCCCCTTCTTTCATGGACTTTCTTAAAGCCCTCCCTGAATTTTAA

Coding sequence (CDS)

ATGAGCCCACCAAAATCTTCCGAAATCAATGGCCCTCGCCCTTCTCCTCTCTTAATCCACAACGATTCTCGTCTTATTCGTAAGCCCCCCCAGCTCCGGCAGCCACTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCTAAGGATTTCATGGCATTGGTTCAACGCCTCACTGGCTGCAACCCACCACCGCCGCTGCCGCTGCCGTCTGACAAACCCTCCTTGTCGGAGAGAAATTTGAACGACAACGATTCATCGTCGGGTGTGACGACGGAGGAGGATATTAATGAAAAACAGAGTAATTGTTCTGTTCTTAAATATTCTTCTCATGATGTTACGACGCCGTTTTCCTCCCCTGCTTTCCTTTGCTCCTCCTTATCCCCTTCTTTCATGGACTTTCTTAAAGCCCTCCCTGAATTTTAA

Protein sequence

MSPPKSSEINGPRPSPLLIHNDSRLIRKPPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLTGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFSSPAFLCSSLSPSFMDFLKALPEF*

Homology

[Close]

BLAST of Chy10G183500 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 12  PRPSPLLIHNDSRLIRKPP---------QLRQPLIIYTHSPKIIHTHPKDFMALVQRLTG 63
           P P  L ++ DS +I+KPP         + R P+IIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Chy10G183500 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-10
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRK---------PPQLRQPLIIYTHSPKIIHTHPK 60
           M P + +EING RPS L +  +S  I+K         P     P+IIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYS 120
           DFMALVQRLTG +            S+    +N  D ++     +D  ++Q    +  ++
Sbjct: 61  DFMALVQRLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDMPLFT 120

Query: 121 SHDVTTPFSSPAFLCSSLSPSFMDFLKAL 141
              +T  F SP  L   +SP+  D  + L
Sbjct: 121 PSSMTL-FGSPTQL-MYMSPNRTDSFRPL 147

[Close]

BLAST of Chy10G183500 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-09
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 8  EINGPRPSPLLIHNDSRLIRKPPQ---------------LRQPLIIYTHSPKIIHTHPKD 63
          +I GPRPSPL +H DS  I+KPP+                R+P++IY  SPK++H    +
Sbjct: 23 QICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASE 82

[Close]

BLAST of Chy10G183500 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-08
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 4  PKSSEINGPRPSPLLIHNDS-RLIRK-----------PPQLRQ-----------PLIIYT 63
          P+S    GP+P+PL +  DS ++I+K           PPQ  Q           P+ IYT
Sbjct: 6  PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

[Close]

BLAST of Chy10G183500 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70
Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKPPQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKSSEINGPRPSPLLIHN SRLIRKP QLRQPLIIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFS 120
           TGCNPPPPLPLPS KPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFS
Sbjct: 61  TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFS 120

Query: 121 SPAFLCSSLSPSFMDFLKALPEF 144
           SPAFL SSLSPSFMDFLKALPEF
Sbjct: 121 SPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of Chy10G183500 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.7e-55
Identity = 122/143 (85.31%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKPPQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKSS+ING RPSPLLIHNDSRL+RK PQLRQPLIIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK-PQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFS 120
           TG NPPPP P         ERN NDNDS+SGVT+EED+NEKQSNCSVLKYSS DVTTPFS
Sbjct: 61  TGFNPPPPQP---------ERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSS-DVTTPFS 120

Query: 121 SPAFLCSSLSPSFMDFLKALPEF 144
           SPAFL SSLSPSFMDFLKALPEF
Sbjct: 121 SPAFL-SSLSPSFMDFLKALPEF 131

[Close]

BLAST of Chy10G183500 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.7e-55
Identity = 122/143 (85.31%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKPPQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKSS+ING RPSPLLIHNDSRL+RK PQLRQPLIIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK-PQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFS 120
           TG NPPPP P         ERN NDNDS+SGVT+EED+NEKQSNCSVLKYSS DVTTPFS
Sbjct: 61  TGFNPPPPQP---------ERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSS-DVTTPFS 120

Query: 121 SPAFLCSSLSPSFMDFLKALPEF 144
           SPAFL SSLSPSFMDFLKALPEF
Sbjct: 121 SPAFL-SSLSPSFMDFLKALPEF 131

[Close]

BLAST of Chy10G183500 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 97/167 (58.08%), Postives = 107/167 (64.07%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRK-PPQLRQPLIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KS +INGPRPSPLLIH  SRLIRK PPQLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGCNPPPPLPLPSDKPSLSERNLN-DNDSSSGVTTEEDINEKQSNCSVLK-----YSSH 120
           LTG  PPPP   P    S    N+N DNDSSS +T E +  +   + S +K       SH
Sbjct: 61  LTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSH 120

Query: 121 ----DV-------------TTPFSSPAFLCSSLSPSFMDFLKALPEF 144
               DV              T F+SP  L +SLSPSFM+FLK LPEF
Sbjct: 121 SFLADVPLFTPAGLRYAPDATSFASPG-LPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Chy10G183500 vs. ExPASy TrEMBL
Match: W9RYA3 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.3e-16
Identity = 69/191 (36.13%), Postives = 94/191 (49.21%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRK--------PPQLRQPLIIYTHSPKIIHTHPKD 60
           MSP K  +ING RPSPL I+ +S  I K        PPQ  QP+IIYTHSP+IIHT P++
Sbjct: 1   MSPEKFIKINGARPSPLKINKESHTIYKPSNHHQMNPPQRHQPVIIYTHSPRIIHTEPRN 60

Query: 61  FMALVQRLTG----------------CNPPPPLPLPSDKPSLSERNL----NDNDSSSGV 120
           FMA+VQ LTG                 +   P+     +P +S  +     +DN+ SS V
Sbjct: 61  FMAVVQNLTGMSRSNDNKNNHKTTSSSSQQRPISSQDSQPVISNSSTSEAKSDNNESSSV 120

Query: 121 TTEEDINEKQSNCSVLKYSSHDVTTPFSSPAFLCSS--------------------LSPS 144
            T+E  N    N ++   S  D+  P  +P F CS                     +SPS
Sbjct: 121 LTDEINNGSDRNYTLSNPSLADI--PLFTPNFFCSPRAAFRFPDATSSPNLGSSSLVSPS 180

[Close]

BLAST of Chy10G183500 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (564), Expect = 6.80e-72
Identity = 122/143 (85.31%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKPPQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKSS+ING RPSPLLIHNDSRL+RKP QLRQPLIIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKP-QLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFS 120
           TG NPPPP P         ERN NDNDS+SGVT+EED+NEKQSNCSVLKYSS DVTTPFS
Sbjct: 61  TGFNPPPPQP---------ERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSS-DVTTPFS 120

Query: 121 SPAFLCSSLSPSFMDFLKALPEF 143
           SPAFL SSLSPSFMDFLKALPEF
Sbjct: 121 SPAFL-SSLSPSFMDFLKALPEF 131

[Close]

BLAST of Chy10G183500 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 200 bits (509), Expect = 3.69e-63
Identity = 119/160 (74.38%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKPPQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKS EINGPRPSPLLIH DSR IRKP QLRQP+IIYTHSPKIIHT PKDFMALVQRL
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRKP-QLRQPVIIYTHSPKIIHTQPKDFMALVQRL 60

Query: 61  TGCNPPPPLPLPSDKPSLS--ERNLNDNDSSSGVTTEEDINE---------------KQS 120
           TG NPPPP P PS+  SLS  ERN NDNDSSSG+TTEE+INE               +QS
Sbjct: 61  TGFNPPPPPP-PSNALSLSFSERNFNDNDSSSGLTTEEEINECGDQKQSVVLKQLVQRQS 120

Query: 121 NCSVLKYSSHDVTTPFSSPAFLCSSLSPSFMDFLKALPEF 143
           N S+L+YSS DVTTPFSSPA L +SLSPSFM+FLKALPEF
Sbjct: 121 NSSLLRYSS-DVTTPFSSPA-LINSLSPSFMEFLKALPEF 156

[Close]

BLAST of Chy10G183500 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus])

HSP 1 Score: 197 bits (500), Expect = 1.66e-62
Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKPPQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKSSEINGPRPSPLLIHN SRLIRKP QLRQPLIIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQ 102
           TGCNPPPPLPLPS KPSLSERNLNDNDSSSGVTTEEDINEKQ
Sbjct: 61  TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQ 102

[Close]

BLAST of Chy10G183500 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 142 bits (359), Expect = 2.88e-40
Identity = 97/167 (58.08%), Postives = 107/167 (64.07%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKPP-QLRQPLIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KS +INGPRPSPLLIH  SRLIRKPP QLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGCNPPPPLPLPSDKPSLSERNLN-DNDSSSGVTTEEDINEKQSNCSVLKY-----SSH 120
           LTG  PPPP   P    S    N+N DNDSSS +T E +  +   + S +K       SH
Sbjct: 61  LTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSH 120

Query: 121 ----DV-------------TTPFSSPAFLCSSLSPSFMDFLKALPEF 143
               DV              T F+SP  L +SLSPSFM+FLK LPEF
Sbjct: 121 SFLADVPLFTPAGLRYAPDATSFASPG-LPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Chy10G183500 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (350), Expect = 1.70e-39
Identity = 84/146 (57.53%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRKP---PQLRQPLIIYTHSPKIIHTHPKDFMALV 60
           MSPPK   I+GPRP PLL+H  SR IRKP   PQLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTT 120
           QRLTGC+PP     PSD           N+ SS V TEED     SNC            
Sbjct: 61  QRLTGCSPPNADKAPSD-----------NNDSSSVVTEED-----SNC------------ 118

Query: 121 PFSSPAFLCSSLSPSFMDFLKALPEF 143
           P  +P  L +SLSPSFM+FLK LPEF
Sbjct: 121 PLFTPRSLVNSLSPSFMEFLKGLPEF 118

[Close]

BLAST of Chy10G183500 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 12  PRPSPLLIHNDSRLIRKPP---------QLRQPLIIYTHSPKIIHTHPKDFMALVQRLTG 63
           P P  L ++ DS +I+KPP         + R P+IIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Chy10G183500 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 1   MSPPKSSEINGPRPSPLLIHNDSRLIRK---------PPQLRQPLIIYTHSPKIIHTHPK 60
           M P + +EING RPS L +  +S  I+K         P     P+IIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGCNPPPPLPLPSDKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYS 120
           DFMALVQRLTG +            S+    +N  D ++     +D  ++Q    +  ++
Sbjct: 61  DFMALVQRLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDMPLFT 120

Query: 121 SHDVTTPFSSPAFLCSSLSPSFMDFLKAL 141
              +T  F SP  L   +SP+  D  + L
Sbjct: 121 PSSMTL-FGSPTQL-MYMSPNRTDSFRPL 147

[Close]

BLAST of Chy10G183500 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 64.3 bits (155), Expect = 9.1e-11
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 4  PKSSEINGPRPSPLLIHNDS-RLIRK-----------PPQLRQ-----------PLIIYT 63
          P+S  I GPRP PL +  DS ++I+K           PPQ  Q           P+IIYT
Sbjct: 6  PRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYT 65

[Close]

BLAST of Chy10G183500 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-10
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 8  EINGPRPSPLLIHNDSRLIRKPPQ---------------LRQPLIIYTHSPKIIHTHPKD 63
          +I GPRPSPL +H DS  I+KPP+                R+P++IY  SPK++H    +
Sbjct: 23 QICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASE 82

[Close]

BLAST of Chy10G183500 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-09
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 4  PKSSEINGPRPSPLLIHNDS-RLIRK-----------PPQLRQ-----------PLIIYT 63
          P+S    GP+P+PL +  DS ++I+K           PPQ  Q           P+ IYT
Sbjct: 6  PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

The following BLAST results are available for this feature:

BLAST of Chy10G183500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	8.9e-11	55.00	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	3.4e-10	33.56	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	4.9e-09	44.29	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	9.2e-08	42.68	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of Chy10G183500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT78	1.3e-70	97.20	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A5D3CFH5	4.7e-55	85.31	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	4.7e-55	85.31	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1DC48	3.6e-31	58.08	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
W9RYA3	7.3e-16	36.13	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV...	[more]

BLAST of Chy10G183500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466850.1	6.80e-72	85.31	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
XP_038893302.1	3.69e-63	74.38	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
KGN52621.2	1.66e-62	97.06	hypothetical protein Csa_008052 [Cucumis sativus]	[more]
XP_022150646.1	2.88e-40	58.08	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
KAG7013019.1	1.70e-39	57.53	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of Chy10G183500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	6.3e-12	55.00	VQ motif-containing protein	[more]
AT1G68450.1	2.4e-11	33.56	VQ motif-containing protein	[more]
AT1G21326.1	9.1e-11	47.56	VQ motif-containing protein	[more]
AT3G18690.1	3.5e-10	44.29	MAP kinase substrate 1	[more]
AT1G21320.1	6.5e-09	42.68	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..67 e-value: 6.6E-13 score: 47.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 6..131
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 6..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G183500.1	Chy10G183500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007276	gamete generation
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding