Chy10G176660 (gene) Cucumber (hystrix) v1

Overview
NameChy10G176660
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH10: 10875903 .. 10876056 (-)
RNA-Seq ExpressionChy10G176660
SyntenyChy10G176660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGGTGGGTCAACAACTCGAAGCGTCAAGTGTCATGAATGCAAAGTATCCTCTGATAGCGAGGAATTTGGGAGAGCCCTTATCAGTATTGTTGTTGCAGATGAATCTACTGAAGATGGCTCTTCCAGTGGGCAGAAGAAGTTTTCTATGTGTA

mRNA sequence

GACGGTGGGTCAACAACTCGAAGCGTCAAGTGTCATGAATGCAAAGTATCCTCTGATAGCGAGGAATTTGGGAGAGCCCTTATCAGTATTGTTGTTGCAGATGAATCTACTGAAGATGGCTCTTCCAGTGGGCAGAAGAAGTTTTCTATGTGTA

Coding sequence (CDS)

GACGGTGGGTCAACAACTCGAAGCGTCAAGTGTCATGAATGCAAAGTATCCTCTGATAGCGAGGAATTTGGGAGAGCCCTTATCAGTATTGTTGTTGCAGATGAATCTACTGAAGATGGCTCTTCCAGTGGGCAGAAGAAGTTTTCTATGTGTA

Protein sequence

DGGSTTRSVKCHECKVSSDSEEFGRALISIVVADESTEDGSSSGQKKFSMCX
Homology
BLAST of Chy10G176660 vs. ExPASy TrEMBL
Match: A0A0A0L8S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G597370 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1  DGGSTTRSVKCHECKVSSDS--EEFGRALISIVVADESTEDGSSSGQKK 48
          D GS T SV+C EC+VSS S  EEFGRAL S+V ADESTEDG SSGQ K
Sbjct: 6  DSGSITGSVRCPECEVSSGSKFEEFGRALTSVVAADESTEDGCSSGQTK 54

BLAST of Chy10G176660 vs. ExPASy TrEMBL
Match: A0A5D3CXM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00530 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-06
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  DGGSTTRSVKCHECKVSSDS--EEFGRALISIVVADESTEDGSSSGQKK 48
          DGGSTT+SV+CHEC+VSS+S  EEF RAL  IV  DES+E G SSGQ K
Sbjct: 6  DGGSTTQSVRCHECEVSSNSEFEEFKRAL--IVATDESSEYGCSSGQMK 52

BLAST of Chy10G176660 vs. ExPASy TrEMBL
Match: A0A5A7VBT6 (Putative leucine-rich repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001860 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1   DGGSTTRSVKCHECKVSSDS--EEFGRALISIVVADESTEDGSSSGQKK 48
           DGGSTT+ V+CHEC+VSSD+  EEF RAL  IV  DES+E G SSGQ K
Sbjct: 197 DGGSTTQRVRCHECEVSSDNEFEEFKRAL--IVATDESSEYGCSSGQMK 243

BLAST of Chy10G176660 vs. ExPASy TrEMBL
Match: A0A0A0KCZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127360 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 1  DGGSTTRSVKCHECKVS--SDSEEFGRALISIVVADESTEDGSSSGQKK 48
          DGG  TR V+ HEC+VS  S+ E+FGRALISIV  DE  ED SSS + K
Sbjct: 6  DGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTK 54

BLAST of Chy10G176660 vs. NCBI nr
Match: KAE8650794.1 (hypothetical protein Csa_017583, partial [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.97e-12
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1  DGGSTTRSVKCHECKVSSDS--EEFGRALISIVVADESTEDGSSSGQKK 47
          D GS T SV+C EC+VSS S  EEFGRAL S+V ADESTEDG SSGQ K
Sbjct: 6  DSGSITGSVRCPECEVSSGSKFEEFGRALTSVVAADESTEDGCSSGQTK 54

BLAST of Chy10G176660 vs. NCBI nr
Match: KAE8649447.1 (hypothetical protein Csa_018892 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.28e-10
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1  DGGSTTRSVKCHECKVSSDSE--EFGRALISIVVADESTEDGSSSGQKKFS 49
          DGG TTRSV+CHEC+V S SE  EF RALISIV  DES EDG S+GQ K S
Sbjct: 6  DGGLTTRSVRCHECEVFSGSEFKEFRRALISIVTIDESIEDGCSNGQAKSS 56

BLAST of Chy10G176660 vs. NCBI nr
Match: TYK16282.1 (hypothetical protein E5676_scaffold21G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.35e-08
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  DGGSTTRSVKCHECKVSSDSE--EFGRALISIVVADESTEDGSSSGQKK 47
          DGGSTT+SV+CHEC+VSS+SE  EF RALI  V  DES+E G SSGQ K
Sbjct: 6  DGGSTTQSVRCHECEVSSNSEFEEFKRALI--VATDESSEYGCSSGQMK 52

BLAST of Chy10G176660 vs. NCBI nr
Match: KAA0063069.1 (putative leucine-rich repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 3.39e-08
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1   DGGSTTRSVKCHECKVSSDSE--EFGRALISIVVADESTEDGSSSGQKK 47
           DGGSTT+ V+CHEC+VSSD+E  EF RALI  V  DES+E G SSGQ K
Sbjct: 197 DGGSTTQRVRCHECEVSSDNEFEEFKRALI--VATDESSEYGCSSGQMK 243

BLAST of Chy10G176660 vs. NCBI nr
Match: KGN46724.1 (hypothetical protein Csa_020938 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 1.72e-07
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 1  DGGSTTRSVKCHECKVS--SDSEEFGRALISIVVADESTEDGSSSGQKK 47
          DGG  TR V+ HEC+VS  S+ E+FGRALISIV  DE  ED SSS + K
Sbjct: 6  DGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTK 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8S22.2e-0771.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G597370 PE=4 SV=1[more]
A0A5D3CXM95.5e-0669.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VBT61.2e-0567.35Putative leucine-rich repeat-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A0A0KCZ95.1e-0461.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8650794.13.97e-1271.43hypothetical protein Csa_017583, partial [Cucumis sativus][more]
KAE8649447.11.28e-1070.59hypothetical protein Csa_018892 [Cucumis sativus][more]
TYK16282.11.35e-0869.39hypothetical protein E5676_scaffold21G00530 [Cucumis melo var. makuwa][more]
KAA0063069.13.39e-0867.35putative leucine-rich repeat-containing protein [Cucumis melo var. makuwa][more]
KGN46724.11.72e-0761.22hypothetical protein Csa_020938 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G176660.1Chy10G176660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane