Chy10G175580 (gene) Cucumber (hystrix) v1

Overview
NameChy10G175580
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297
LocationchrH10: 9017292 .. 9017504 (-)
RNA-Seq ExpressionChy10G175580
SyntenyChy10G175580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAAGGATGTGAATCTGACAATCGCCAATTTATCAATCACTCATGATTTCCTTCCTCTACCACTTGGGAGTGCAGATGTCATATTAGGAGTTACATGGCTGGAAACTTTGGGGAAAGTGATGTTTGATTACAAGTTATCAGAGATGGAATTTTCATTGGGAGAATTTTTGGTGATTCTACAAGGGAACAGAAGCCTTGTTAAATCATAG

mRNA sequence

ATGTGTAAGGATGTGAATCTGACAATCGCCAATTTATCAATCACTCATGATTTCCTTCCTCTACCACTTGGGAGTGCAGATGTCATATTAGGAGTTACATGGCTGGAAACTTTGGGGAAAGTGATGTTTGATTACAAGTTATCAGAGATGGAATTTTCATTGGGAGAATTTTTGGTGATTCTACAAGGGAACAGAAGCCTTGTTAAATCATAG

Coding sequence (CDS)

ATGTGTAAGGATGTGAATCTGACAATCGCCAATTTATCAATCACTCATGATTTCCTTCCTCTACCACTTGGGAGTGCAGATGTCATATTAGGAGTTACATGGCTGGAAACTTTGGGGAAAGTGATGTTTGATTACAAGTTATCAGAGATGGAATTTTCATTGGGAGAATTTTTGGTGATTCTACAAGGGAACAGAAGCCTTGTTAAATCATAG

Protein sequence

MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVILQGNRSLVKS*
Homology
BLAST of Chy10G175580 vs. ExPASy TrEMBL
Match: A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFL 59
           +CK+VNLTIANLSITHDFLPLPLGSADVILGVTWLE LGKV+F YKLSEMEF LGE++
Sbjct: 140 VCKEVNLTIANLSITHDFLPLPLGSADVILGVTWLEMLGKVIFYYKLSEMEFPLGEWM 197

BLAST of Chy10G175580 vs. ExPASy TrEMBL
Match: A0A803QCP9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +CK++N+    + I  DFLPLPLGSAD+ILG+ WL TLG    +     MEF LGE  V 
Sbjct: 295 ICKNLNIHFQRVDIWDDFLPLPLGSADIILGLQWLTTLGMTKTNLTEQTMEFQLGEQSVT 354

Query: 61  LQGNRSLVKS 71
           ++GN SL +S
Sbjct: 355 IRGNSSLNRS 364

BLAST of Chy10G175580 vs. ExPASy TrEMBL
Match: A0A7J6FAX8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011323 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +CK++N+    + I  DFLPLPLGSAD+ILG+ WL TLG    +     MEF LGE  V 
Sbjct: 215 ICKNLNIHFQRVDIWDDFLPLPLGSADIILGLQWLTTLGMTKTNLTEQTMEFQLGEQSVT 274

Query: 61  LQGNRSLVKS 71
           ++GN SL +S
Sbjct: 275 IRGNSSLDRS 284

BLAST of Chy10G175580 vs. ExPASy TrEMBL
Match: A0A7J6DK88 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_001093 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +C+++N+    + I  DFLPLPLGSAD+ILG+ WL TLG    +     MEF LGE  V 
Sbjct: 215 ICENLNIHFQRVDIWDDFLPLPLGSADIILGLQWLTTLGMTKTNLTEQTMEFQLGEQSVT 274

Query: 61  LQGNRSLVKS 71
           ++GN SL +S
Sbjct: 275 IRGNSSLDRS 284

BLAST of Chy10G175580 vs. ExPASy TrEMBL
Match: A0A5C7IJS7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004373 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.5e-09
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +CK V L +  ++I  +FLPL LGS+DVILG+ WL TLG    ++KL  M+F LG   V 
Sbjct: 438 ICKGVTLHLQGINIVEEFLPLGLGSSDVILGIQWLATLGMTHTNWKLQVMKFQLGNESVT 497

Query: 61  LQGNRSLVKS 71
           L+G+ SL K+
Sbjct: 498 LRGDPSLGKT 507

BLAST of Chy10G175580 vs. NCBI nr
Match: XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus])

HSP 1 Score: 123 bits (308), Expect = 5.75e-31
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +CKDVNL IANLSITH+FLPLPLGS DVILGVTWLETLGKV+FDYKLSEMEFS GE++VI
Sbjct: 160 VCKDVNLKIANLSITHNFLPLPLGSVDVILGVTWLETLGKVIFDYKLSEMEFSSGEWVVI 219

Query: 61  LQGNRSLVKS 70
           LQG+RSLV+S
Sbjct: 220 LQGDRSLVRS 229

BLAST of Chy10G175580 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 8.10e-24
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFL 58
           +CK+VNLTIANLSITHDFLPLPLGSADVILGVTWLE LGKV+F YKLSEMEF LGE++
Sbjct: 140 VCKEVNLTIANLSITHDFLPLPLGSADVILGVTWLEMLGKVIFYYKLSEMEFPLGEWM 197

BLAST of Chy10G175580 vs. NCBI nr
Match: XP_038904464.1 (uncharacterized protein LOC120090832 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 5.63e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +CK V L ++NL+I +D  PLPLG+ DV+LGV WL TLG+V  D+  SEMEF +G++ V 
Sbjct: 493 VCKGVILNLSNLTIINDLFPLPLGNIDVVLGVQWLMTLGRVECDWGTSEMEFQIGDWQVH 552

Query: 61  LQGNRSLVKS 70
           L+GNR+L+K+
Sbjct: 553 LKGNRNLMKA 562

BLAST of Chy10G175580 vs. NCBI nr
Match: XP_038907170.1 (uncharacterized protein LOC120092972 [Benincasa hispida])

HSP 1 Score: 80.9 bits (198), Expect = 6.61e-16
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +CK V L + NL+I +DF P+PLGSADV++GV WL TLG+V  D+  S+M+F +GE  V 
Sbjct: 275 ICKGVVLNLPNLTIINDFFPIPLGSADVVMGVQWLMTLGQVECDWSTSKMDFQVGERRVH 334

Query: 61  LQGNRSLVKS 70
           L+ +RSLVKS
Sbjct: 335 LKADRSLVKS 344

BLAST of Chy10G175580 vs. NCBI nr
Match: XP_010521015.1 (PREDICTED: uncharacterized protein LOC104800012 [Tarenaya hassleriana])

HSP 1 Score: 70.1 bits (170), Expect = 3.33e-13
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   MCKDVNLTIANLSITHDFLPLPLGSADVILGVTWLETLGKVMFDYKLSEMEFSLGEFLVI 60
           +C+ V L + NL+I  DFLPL LGSADV+LG+ WL TLG++ F++   EM F  G   V 
Sbjct: 70  ICQAVTLYVQNLAIVADFLPLELGSADVVLGIQWLRTLGQIQFNFSKLEMRFFQGATQVT 129

Query: 61  LQGNRSL 67
           +QG+  L
Sbjct: 130 IQGDPGL 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTU61.2e-1986.21Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A803QCP91.1e-0950.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6FAX81.1e-0950.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011323 PE=4 SV=1[more]
A0A7J6DK883.3e-0948.57Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_001093 PE=4 SV=1[more]
A0A5C7IJS79.5e-0948.57Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004373 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_031737572.15.75e-3185.71uncharacterized protein LOC116402461 [Cucumis sativus][more]
KAA0039528.18.10e-2486.21ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp... [more]
XP_038904464.15.63e-1654.29uncharacterized protein LOC120090832 [Benincasa hispida][more]
XP_038907170.16.61e-1655.71uncharacterized protein LOC120092972 [Benincasa hispida][more]
XP_010521015.13.33e-1349.25PREDICTED: uncharacterized protein LOC104800012 [Tarenaya hassleriana][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF08284RVP_2coord: 1..37
e-value: 1.3E-5
score: 25.0
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 1..59
e-value: 6.9E-7
score: 31.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G175580.1Chy10G175580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding