Chy10G173320 (gene) Cucumber (hystrix) v1

Overview
NameChy10G173320
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionG-box-binding factor 1-like
LocationchrH10: 3537816 .. 3539818 (+)
RNA-Seq ExpressionChy10G173320
SyntenyChy10G173320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGTTTGTTGAAAAAGACAAGGAGTTTGCAAGACCAACTTCTCTATCGTTCACTAATCACATCTCTGATTTTTTTTATTGATTTCGAGCTATACAAACAGAATTAAGAGGTGAGGTTTAAATTTATTGAAAGCTAATTCCTTTTCAAACAAATTTTATGCAGAAAGCTTGAGCAAATTCTGATGTTCATTGGGTGAATTTTGACAAAGAAAATAGGGCAGGTGGTTTTCACTCGAAATCAGGAGATCTCTGGTTTTTTTATATTTCAGGGTGTATCGATAGACTTTGGATCTCTATTTCATTTGGTTGGAAAGATTATTCAATTTAATACAACTTTCGTGAAGAAATGGTGAACCAAAAATGACTAAAGATAAGTTAAATTGTAAGTTAAAGGTGTGGTACGCGCGATTATTGGAGTGGTTCAGTTTCGAGGGATACCTGAGATTATACACAGGGAATCAGATTTACATGTCTTGAGGTAAGTTTTAGAGGACCTCAAAATGAACATTTTGAAATAAAGAAATCTTATTTGGTTAAGTAGTGGAAGAGTTATGATCATTTGAATTTTGTGCTGCGAATGTGAAAAATTCTGAGAAATGTGTCGAGTATGGTTTATTGTTTTTTAAGGATAGACTTCTTTAGCATTATCCTTAGTGAGCCATGTCAAGCATAACATTTGAAGATCATAATATTTAGGTTTCTAATACTCGGTTCTGGATGTTTGACAGGCCAAGAGGAAATAGGTCGGATTTACACATCCGGAAACTAGTCTTAGACTGTGAGTGACCAAAACCAGTTTTGAAAATATTTTTTTTTTCTCCTAATTATTAATTATGATTGACTGACATACACGTTTATTTACAAGCTTTGAAAATCATTTGAATTCCATGATTATTTTCAAGTATGAGTTCCGAGACTAGATTTCTTAATGAAAATTTATGCTAGCATGTGATTATCGAATGTCTAGAAAGTATTTGAACCACTATGTTTCAAACAAAGCATGAGTTACCAAGTTTTGTTTTAAGAACTACAACTTTTCACGAACAATCTAAGTAAGCTTGAGCTTTAGGAAAGATAAAGATAGCAGACATGTTTTAATGTTTTCATTTGATTTTTCTGATGTTTCCATTAACTACATGACTAAGGTGTTGAGCCCGAGGCTATATGGTACTATGTGCACACAAGTTAGATTCCATTGTTGACGTTGAGTGTACTCCGTAACAACGAGGCTGTCGTGAGTGTTGGGTGAGCCCCACTACGACAAAGACGATGGGAGTGCTTGGCGGGCCCCACTATATCGTAGAGCTTGTAAACGTTTGTTGTACTGGGTGTGTCCTACAGAACGTAGATTTGTCATGTTAGTTAAAATGTTTTGATATACTTGATATGTCTTCCTAGATTTCAATGACGTATATACTGAGCATTTGAGGAAGCTATTCTTACTATTTTATGTCTATGTTTACGACTTGTATAAACAGATTTATATGTGTAAGCTTTCACGTGCTCTTACCTTTAAATTTTTAGTTTTAAAGTGAGTCACTCACTGAGCTTTATAGCTTACCCTTCCAAAATGTTTTACCCACTTTCCAGGTAGAGATCGAGTTCCCGGTGCCTGATAAACTGCCTTAGTCTGCTGAAGCTCCGATATTGATTTCCACTACGTGGTTAGAGTTGTGCATAGAGTCTGTTGTGTTATGATGTATATATCTTAGTATGATATAGATACTCTATAGTTTGTGTGAGCTTTAGGAGCTGCGGGTATATAAACCTTTGTTGGTTATGTTTTGGTTAAGGTGTCTCTAGGTTTACTCGTGAAATTAGTTATTTCCGGGCTACACTTCATGTATGTATATGATTAGTCTAGGATATGCTATATTATGTTACATGTATAATAGTTTATATACTAGATCAGCAAGTTTATCACGTTAAAGTTTTCAATAGAGTCGACATATATAGGTAGAGAAAAGTGTTGTCGGTTGGCTTCACCCCGTCTTTCGGTCTAA

mRNA sequence

AGTGTTTGTTGAAAAAGACAAGGAAGAAAATAGGGCAGGTGGTTTTCACTCGAAATCAGGAGATCTCTGGTTTTTTTATATTTCAGGGTGTATCGGTGTGGTACGCGCGATTATTGGAGTGGTTCAGTTTCGAGGGATACCTGAGATTATACACAGGGAATCAGATTTACATGTCTTGAGGTTTCTAATACTCGGTTCTGGATGTTTGACAGGCCAAGAGGAAATAGGTCGGATTTACACTATGAGTTCCGAGACTAGATTTCTTAATGAAAATTTATGCTAGCATCCCGAGGCTATATGGTACTATGTGCACACAAGTTAGATTCCATTGTTGACGTTGAGTGTACTCCGTAACAACGAGGCTGTCGTGAGTGTTGGGTGAGCCCCACTACGACAAAGACGATGGGAGTGCTTGGCGGGCCCCACTATATCGTAGAGCTTGTAAACGTTTGTTGTACTGGGTGTGTCCTACAGAACGTAGATTTGTCATGTGTCTCTAGGTTTACTCGTGAAATTAGTTATTTCCGGGCTACACTTCATATCAGCAAGTTTATCACGTTAAAGTTTTCAATAGAGTCGACATATATAGGTAGAGAAAAGTGTTGTCGGTTGGCTTCACCCCGTCTTTCGGTCTAA

Coding sequence (CDS)

AGTGTTTGTTGAAAAAGACAAGGAAGAAAATAGGGCAGGTGGTTTTCACTCGAAATCAGGAGATCTCTGGTTTTTTTATATTTCAGGGTGTATCGGTGTGGTACGCGCGATTATTGGAGTGGTTCAGTTTCGAGGGATACCTGAGATTATACACAGGGAATCAGATTTACATGTCTTGAGGTTTCTAATACTCGGTTCTGGATGTTTGACAGGCCAAGAGGAAATAGGTCGGATTTACACTATGAGTTCCGAGACTAGATTTCTTAATGAAAATTTATGCTAGCATCCCGAGGCTATATGGTACTATGTGCACACAAGTTAGATTCCATTGTTGACGTTGAGTGTACTCCGTAACAACGAGGCTGTCGTGAGTGTTGGGTGAGCCCCACTACGACAAAGACGATGGGAGTGCTTGGCGGGCCCCACTATATCGTAGAGCTTGTAAACGTTTGTTGTACTGGGTGTGTCCTACAGAACGTAGATTTGTCATGTGTCTCTAGGTTTACTCGTGAAATTAGTTATTTCCGGGCTACACTTCATATCAGCAAGTTTATCACGTTAAAGTTTTCAATAGAGTCGACATATATAGGTAGAGAAAAGTGTTGTCGGTTGGCTTCACCCCGTCTTTCGGTCTAA

Protein sequence

SVC*KRQGRK*GRWFSLEIRRSLVFLYFRVYRCGTRDYWSGSVSRDT*DYTQGIRFTCLEVSNTRFWMFDRPRGNRSDLHYEFRD*IS**KFMLASRGYMVLCAHKLDSIVDVECTP*QRGCRECWVSPTTTKTMGVLGGPHYIVELVNVCCTGCVLQNVDLSCVSRFTREISYFRATLHISKFITLKFSIESTYIGREKCCRLASPRLSV*
Homology
[Close]
BLAST of Chy10G173320 vs. ExPASy TrEMBL
Match: A0A5D3DBQ7 (G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00320 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 132 TKTMGVLGGPHYIVELVNVCCTGCVLQNVDLSCVSRFTREISYFRATLHISK--FITLKF 191
           TKTMG+LG PHYIVEL+NV C G  L NVDLSCVSRF  +ISYF+ATLH  +    TL  
Sbjct: 2   TKTMGMLGRPHYIVELINVGCIGSALHNVDLSCVSRFICKISYFQATLHSKEDPAPTLLL 61

Query: 192 SIESTYIGR 199
           +IE  + GR
Sbjct: 62  AIEHPFAGR 70

[Close]
BLAST of Chy10G173320 vs. ExPASy TrEMBL
Match: A0A5D3CHK1 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001400 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 45/80 (56.25%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 133 KTMGVLGGPHYIVELVNVCCTGCVLQNVDLSCVS-RFTREISYFRATLHISKFITLKFSI 192
           K M VL G HYIVEL NV C G  L NVDLSCVS RFT EISYFRATLH S    L   +
Sbjct: 3   KMMEVLDGSHYIVELANVGCIGRALHNVDLSCVSIRFTCEISYFRATLHESCHHVLADDV 62

Query: 193 ESTYIG-----REKCCRLAS 207
                G     RE+  RLA+
Sbjct: 63  GRIRTGCKVLPRERKVRLAT 82

[Close]
BLAST of Chy10G173320 vs. ExPASy TrEMBL
Match: A0A5D3BRV3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3741G00040 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-04
Identity = 26/33 (78.79%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 135 MGVLGGPHYIVELVNVCCTGCVLQNVDLSCVSR 168
           MGVLG   YIVELVNV CTGC L N DLSCVSR
Sbjct: 1   MGVLGRSRYIVELVNVGCTGCALHNEDLSCVSR 33

[Close]
BLAST of Chy10G173320 vs. NCBI nr
Match: TYK21003.1 (G-box-binding factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.08e-15
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 132 TKTMGVLGGPHYIVELVNVCCTGCVLQNVDLSCVSRFTREISYFRATLHISK--FITLKF 191
           TKTMG+LG PHYIVEL+NV C G  L NVDLSCVSRF  +ISYF+ATLH  +    TL  
Sbjct: 2   TKTMGMLGRPHYIVELINVGCIGSALHNVDLSCVSRFICKISYFQATLHSKEDPAPTLLL 61

Query: 192 SIESTYIGRE 199
           +IE  + GR 
Sbjct: 62  AIEHPFAGRR 71

[Close]
BLAST of Chy10G173320 vs. NCBI nr
Match: TYK11281.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.61e-10
Identity = 45/80 (56.25%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 133 KTMGVLGGPHYIVELVNVCCTGCVLQNVDLSCVS-RFTREISYFRATLHISKFITLKFSI 192
           K M VL G HYIVEL NV C G  L NVDLSCVS RFT EISYFRATLH S    L   +
Sbjct: 3   KMMEVLDGSHYIVELANVGCIGRALHNVDLSCVSIRFTCEISYFRATLHESCHHVLADDV 62

Query: 193 ESTYIG-----REKCCRLAS 206
                G     RE+  RLA+
Sbjct: 63  GRIRTGCKVLPRERKVRLAT 82

[Close]
BLAST of Chy10G173320 vs. NCBI nr
Match: KAA0046503.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK01915.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 2.00e-04
Identity = 26/33 (78.79%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 135 MGVLGGPHYIVELVNVCCTGCVLQNVDLSCVSR 167
           MGVLG   YIVELVNV CTGC L N DLSCVSR
Sbjct: 1   MGVLGRSRYIVELVNVGCTGCALHNEDLSCVSR 33

[Close]
BLAST of Chy10G173320 vs. NCBI nr
Match: TYK02142.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 3.42e-04
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 135 MGVLGGPHYIVELVNVCCTGCVLQNVDLSCVSR--FTREISYFRATLHISKFITLKFSIE 193
           MGVL GP+YIVELVNV CTG  L NVDLSC S       +S  +A   IS+ + L+ S  
Sbjct: 2   MGVLDGPYYIVELVNVGCTGHALHNVDLSCKSSRCLINCLSLLKAPRSISRQVPLEESDA 61

The following BLAST results are available for this feature:
BLAST of Chy10G173320 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G173320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DBQ72.5e-1262.32G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3CHK11.7e-0856.25Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3BRV35.5e-0478.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Chy10G173320 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK21003.11.08e-1561.43G-box-binding factor 1-like [Cucumis melo var. makuwa][more]
TYK11281.13.61e-1056.25putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0046503.12.00e-0478.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK02142.13.42e-0452.46CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of Chy10G173320 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G173320.1Chy10G173320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane