CcUC11G226580 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G226580
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Poly polymerase 1, putative
Location	CicolChr11: 30737084 .. 30737975 (+)
RNA-Seq Expression	CcUC11G226580
Synteny	CcUC11G226580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTAAATTTGTTATAGCAAAAAATAATTAATTAACAAAGCCAAAACAAAGTAAAACAAGGTTGAAAAAGGTTTAATATAGAATCATAATTTATACACACAATTTTTATATTTTTTTTCAACTCATTTAAAAGAGAAACAAAAAATGAGGGATGCAAGCAAGTTTTGTCCGTTTATGTTTTGTTTCGATCGAATGCATTGAATTTCAACGTACTTGAAGTTAGGGAGGAGGCAAATGCTGACCACCACGTTGGTTGGTTTGCTTGGGAAACAAGATTGGTCCTCATCCGTTATTTCCTTTTGTCTTGCTCAGCATGTCCGTTGACTATTACACGTTTCTTTTTTTTTTTTTTGGTTAGCTTTACTATTAAATAGACCGCGTTGATAAAGTTGAAAATTGAAAGGTGTAGTTTTTCCAAGAAAAAGAAAAAGGAAAAAAGAAAGGTAATTTATGATTTATGATGAAACTCTCCTTCTCTTTCCTCCTCATCACTTACGTCACATGATTATCACATTTGATTGTAAATTGTTTGTGGCAACCATTTAATCTGAATTTCAAATATCCCTCCCATTTTCTTTCACGTCCTACCCAGGCCATAATTAATTCCCCAAATTGCCTTCATGAAATCGATAATCGATCTTCATAAGCGCCTGTTTGTCTAGCAGCCTCATTATTCCCAAAGCCTCTTTTGTCCTCCTACCTCCTCCCACCACCAAAGTGATCTCTTTACAAGGCCATCTCCGCGCATACCCTGTCCCCATCTCCTTCTCCTGCGTTCTTCAAACCGAAAATTCATCTTCTTCTACTTCCGACTCTTTTCTTTGCAACTCCGACCGCTTATACTACGATGATTTCATCCCGCCTTTGCCTCTCCACGGCCACCTGTAG

mRNA sequence

ATGGGGAGGAGGCAAATGCTGACCACCACGTTGGTTGGTTTGCTTGGGAAACAAGATTGGTCCTCATCCGTTATTTCCTTTTGTCTTGCTCAGCATACCGCGTTGATAAAGTTGAAAATTGAAAGCCTCATTATTCCCAAAGCCTCTTTTGTCCTCCTACCTCCTCCCACCACCAAAGTGATCTCTTTACAAGGCCATCTCCGCGCATACCCTGTCCCCATCTCCTTCTCCTGCGTTCTTCAAACCGAAAATTCATCTTCTTCTACTTCCGACTCTTTTCTTTGCAACTCCGACCGCTTATACTACGATGATTTCATCCCGCCTTTGCCTCTCCACGGCCACCTGTAG

Coding sequence (CDS)

ATGGGGAGGAGGCAAATGCTGACCACCACGTTGGTTGGTTTGCTTGGGAAACAAGATTGGTCCTCATCCGTTATTTCCTTTTGTCTTGCTCAGCATACCGCGTTGATAAAGTTGAAAATTGAAAGCCTCATTATTCCCAAAGCCTCTTTTGTCCTCCTACCTCCTCCCACCACCAAAGTGATCTCTTTACAAGGCCATCTCCGCGCATACCCTGTCCCCATCTCCTTCTCCTGCGTTCTTCAAACCGAAAATTCATCTTCTTCTACTTCCGACTCTTTTCTTTGCAACTCCGACCGCTTATACTACGATGATTTCATCCCGCCTTTGCCTCTCCACGGCCACCTGTAG

Protein sequence

MGRRQMLTTTLVGLLGKQDWSSSVISFCLAQHTALIKLKIESLIIPKASFVLLPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRLYYDDFIPPLPLHGHL

Homology

[Close]

BLAST of CcUC11G226580 vs. NCBI nr
Match: XP_038896630.1 (uncharacterized protein LOC120084892 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 6.6e-22
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 43  LIIPKASFVLLPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRLYY 102
           LIIPKAS V  PPPT KVI+LQG LR YPVPIS S VLQTE+SSSSTSDSFLCNSDRLYY
Sbjct: 9   LIIPKASSVPPPPPTAKVINLQGDLREYPVPISVSRVLQTEDSSSSTSDSFLCNSDRLYY 68

Query: 103 DDFIPPLPLHGHL 116
           DDFIPPLPL   L
Sbjct: 69  DDFIPPLPLDHQL 81

[Close]

BLAST of CcUC11G226580 vs. NCBI nr
Match: XP_022981858.1 (uncharacterized protein LOC111480876 [Cucurbita maxima] >XP_023525127.1 uncharacterized protein LOC111788827 [Cucurbita pepo subsp. pepo] >KAG6608670.1 hypothetical protein SDJN03_02012, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037985.1 hypothetical protein SDJN02_01618, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 58/70 (82.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 46  PKASFVLLPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRLYYDDF 105
           PK S V  PPPT KVISLQGHLR YPVPIS S VLQTENSSSS SDSFLCNSDRLYYDDF
Sbjct: 12  PKPSSVSPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSLSDSFLCNSDRLYYDDF 71

Query: 106 IPPLPLHGHL 116
           IPPLPL   L
Sbjct: 72  IPPLPLDEQL 81

[Close]

BLAST of CcUC11G226580 vs. NCBI nr
Match: XP_022940531.1 (uncharacterized protein LOC111446101 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 58/70 (82.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 46  PKASFVLLPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRLYYDDF 105
           PK S V  PPPT KVISLQGHLR YPVPIS S VLQTENSSSS SDSFLCNSDRLYYDDF
Sbjct: 12  PKPSSVSPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSLSDSFLCNSDRLYYDDF 71

Query: 106 IPPLPLHGHL 116
           IPPLPL   L
Sbjct: 72  IPPLPLDEQL 81

[Close]

BLAST of CcUC11G226580 vs. NCBI nr
Match: XP_008453039.1 (PREDICTED: uncharacterized protein LOC103493864 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-20
Identity = 59/75 (78.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 43  LIIPKASFVL--LPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRL 102
           LIIPK S  +   PPPT KVISLQGHLR YPVPIS S VLQTENSSSSTSDSFLCNSDRL
Sbjct: 9   LIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRL 68

Query: 103 YYDDFIPPLPLHGHL 116
           Y+DDFIP LPL   L
Sbjct: 69  YFDDFIPSLPLDHQL 83

[Close]

BLAST of CcUC11G226580 vs. NCBI nr
Match: XP_011654294.1 (uncharacterized protein LOC101220453 [Cucumis sativus] >KGN55556.1 hypothetical protein Csa_012182 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-20
Identity = 59/75 (78.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 43  LIIPKASFVL--LPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRL 102
           LIIPK S  +   PPPT KVISLQGHLR YPVPIS S VLQTENSSSSTSDSFLCNSDRL
Sbjct: 9   LIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRL 68

Query: 103 YYDDFIPPLPLHGHL 116
           +YDDFIP LPL   L
Sbjct: 69  FYDDFIPSLPLDHQL 83

[Close]

BLAST of CcUC11G226580 vs. ExPASy TrEMBL
Match: A0A6J1J381 (uncharacterized protein LOC111480876 OS=Cucurbita maxima OX=3661 GN=LOC111480876 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 58/70 (82.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 46  PKASFVLLPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRLYYDDF 105
           PK S V  PPPT KVISLQGHLR YPVPIS S VLQTENSSSS SDSFLCNSDRLYYDDF
Sbjct: 12  PKPSSVSPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSLSDSFLCNSDRLYYDDF 71

Query: 106 IPPLPLHGHL 116
           IPPLPL   L
Sbjct: 72  IPPLPLDEQL 81

[Close]

BLAST of CcUC11G226580 vs. ExPASy TrEMBL
Match: A0A6J1FIQ7 (uncharacterized protein LOC111446101 OS=Cucurbita moschata OX=3662 GN=LOC111446101 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 58/70 (82.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 46  PKASFVLLPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRLYYDDF 105
           PK S V  PPPT KVISLQGHLR YPVPIS S VLQTENSSSS SDSFLCNSDRLYYDDF
Sbjct: 12  PKPSSVSPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSLSDSFLCNSDRLYYDDF 71

Query: 106 IPPLPLHGHL 116
           IPPLPL   L
Sbjct: 72  IPPLPLDEQL 81

[Close]

BLAST of CcUC11G226580 vs. ExPASy TrEMBL
Match: A0A0A0L5Z9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665120 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 59/75 (78.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 43  LIIPKASFVL--LPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRL 102
           LIIPK S  +   PPPT KVISLQGHLR YPVPIS S VLQTENSSSSTSDSFLCNSDRL
Sbjct: 9   LIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRL 68

Query: 103 YYDDFIPPLPLHGHL 116
           +YDDFIP LPL   L
Sbjct: 69  FYDDFIPSLPLDHQL 83

[Close]

BLAST of CcUC11G226580 vs. ExPASy TrEMBL
Match: A0A1S3BUP5 (uncharacterized protein LOC103493864 OS=Cucumis melo OX=3656 GN=LOC103493864 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 59/75 (78.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 43  LIIPKASFVL--LPPPTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRL 102
           LIIPK S  +   PPPT KVISLQGHLR YPVPIS S VLQTENSSSSTSDSFLCNSDRL
Sbjct: 9   LIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRL 68

Query: 103 YYDDFIPPLPLHGHL 116
           Y+DDFIP LPL   L
Sbjct: 69  YFDDFIPSLPLDHQL 83

[Close]

BLAST of CcUC11G226580 vs. ExPASy TrEMBL
Match: A0A6J1DM27 (uncharacterized protein LOC111021675 OS=Momordica charantia OX=3673 GN=LOC111021675 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.9e-17
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 54  PP--PTTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDSFLCNSDRLYYDDFIPPLPL 113
           PP  PT KVISL+G+LR YP PIS S VLQTEN SSSTSDSFLCNSD LYYDDFIPP+PL
Sbjct: 15  PPATPTAKVISLEGNLREYPAPISVSRVLQTENPSSSTSDSFLCNSDSLYYDDFIPPMPL 74

Query: 114 HGHL 116
              L
Sbjct: 75  DDQL 78

[Close]

BLAST of CcUC11G226580 vs. TAIR 10
Match: AT1G76600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21010.1); Has 220 Blast hits to 220 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 57  TTKVISLQGHLRAYPVPISFSCVLQTENSSSSTSDS----FLCNSDRLYYDDFIPPL 110
           T K++++ G LR Y VP+  S VL++E++SSS+S S    FLCNSD LYYDDFIP +
Sbjct: 18  TAKIVTINGDLREYDVPVLASQVLESESTSSSSSSSSSSYFLCNSDSLYYDDFIPAI 74

[Close]

BLAST of CcUC11G226580 vs. TAIR 10
Match: AT1G21010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 56  PTTKVISLQGHLRAYPVPISFSCVLQTE-------NSSSSTSDSFLCNSDRLYYDDFIPP 110
           PT K++++ G LR Y VP+  S VL+ E       +SSS  S  F+C+SD LYYDDFIP 
Sbjct: 16  PTVKIVTVNGDLREYNVPVIASQVLEAESAAAYSSSSSSRPSSYFICDSDSLYYDDFIPA 75

The following BLAST results are available for this feature:

BLAST of CcUC11G226580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896630.1	6.6e-22	82.19	uncharacterized protein LOC120084892 [Benincasa hispida]	[more]
XP_022981858.1	1.1e-21	82.86	uncharacterized protein LOC111480876 [Cucurbita maxima] >XP_023525127.1 uncharac...	[more]
XP_022940531.1	1.1e-21	82.86	uncharacterized protein LOC111446101 [Cucurbita moschata]	[more]
XP_008453039.1	2.8e-20	78.67	PREDICTED: uncharacterized protein LOC103493864 [Cucumis melo]	[more]
XP_011654294.1	2.8e-20	78.67	uncharacterized protein LOC101220453 [Cucumis sativus] >KGN55556.1 hypothetical ...	[more]

BLAST of CcUC11G226580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC11G226580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J381	5.4e-22	82.86	uncharacterized protein LOC111480876 OS=Cucurbita maxima OX=3661 GN=LOC111480876...	[more]
A0A6J1FIQ7	5.4e-22	82.86	uncharacterized protein LOC111446101 OS=Cucurbita moschata OX=3662 GN=LOC1114461...	[more]
A0A0A0L5Z9	1.3e-20	78.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665120 PE=4 SV=1	[more]
A0A1S3BUP5	1.3e-20	78.67	uncharacterized protein LOC103493864 OS=Cucumis melo OX=3656 GN=LOC103493864 PE=...	[more]
A0A6J1DM27	6.9e-17	76.56	uncharacterized protein LOC111021675 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of CcUC11G226580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76600.1	1.2e-10	54.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT1G21010.1	1.2e-08	47.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33052:SF87	POLY POLYMERASE	coord: 55..113
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 55..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G226580.1	CcUC11G226580.1	mRNA