CcUC11G211060 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G211060
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr11: 3010678 .. 3011253 (+)
RNA-Seq Expression	CcUC11G211060
Synteny	CcUC11G211060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTCCTCCATCGCTCCAACACATCAGCCCAACCTTATCCACAAAAAACCTCATAGCGACGGCCACCGCGAAAACTAGCGCAACCACCTCATCTCCACAGCACCCATGTCTAGCATTGCTCGACACTTGCTCATCCATATCGGAACTCAAGCAAATTCATGCCCAACTCTTGAGAACTGGCCCTTTCTTCGACCCATTTACCGCCAGCAAAATTGTGGCCTTCTCTTCTCTTGATCGCACTGGGAGTGGGAGCCTCCATTACGCCTGCACAGTTTTCTCCCAAATCTCCAATCCCACACCCTTCACTTACAATTCCACTATTCCCGGTTTTTCCATCAAGAATTTGCCACATGACGCCGTTCTTTTCTGTCGACAAATGCTCGTCGACGGGCTTCTCCCTGACAGGTTTACTTTCCCATCTCTGTTCAAGGCCACTGAAGACTTATCCCTAGGAAAACAGTTGCATTGTCACTCGATGAAGTTTGGGTTCGCTTCAGATGCTTGCGTTCAAAACACTGATGTATATGTACTCCATTTGTGGGTGTTTGGTTTCAGCTCAAAAGGTGTTTGA

mRNA sequence

ATGGCGGTTCCTCCATCGCTCCAACACATCAGCCCAACCTTATCCACAAAAAACCTCATAGCGACGGCCACCGCGAAAACTAGCGCAACCACCTCATCTCCACAGCACCCATGTCTAGCATTGCTCGACACTTGCTCATCCATATCGGAACTCAAGCAAATTCATGCCCAACTCTTGAGAACTGGCCCTTTCTTCGACCCATTTACCGCCAGCAAAATTGTGGCCTTCTCTTCTCTTGATCGCACTGGGAGTGGGAGCCTCCATTACGCCTGCACAGTTTTCTCCCAAATCTCCAATCCCACACCCTTCACTTACAATTCCACTATTCCCGGTTTTTCCATCAAGAATTTGCCACATGACGCCGTTCTTTTCTGTCGACAAATGCTCGTCGACGGGCTTCTCCCTGACAGGTTTACTTTCCCATCTCTGTTCAAGGCCACTGAAGACTTATCCCTAGGAAAACAGTTGCATTGTCACTCGATGAAGTTTGGGTTCGCTTCAGATGCTTGCGTTCAAAACACTGATGTATATGTACTCCATTTGTGGGTGTTTGGTTTCAGCTCAAAAGGTGTTTGA

Coding sequence (CDS)

ATGGCGGTTCCTCCATCGCTCCAACACATCAGCCCAACCTTATCCACAAAAAACCTCATAGCGACGGCCACCGCGAAAACTAGCGCAACCACCTCATCTCCACAGCACCCATGTCTAGCATTGCTCGACACTTGCTCATCCATATCGGAACTCAAGCAAATTCATGCCCAACTCTTGAGAACTGGCCCTTTCTTCGACCCATTTACCGCCAGCAAAATTGTGGCCTTCTCTTCTCTTGATCGCACTGGGAGTGGGAGCCTCCATTACGCCTGCACAGTTTTCTCCCAAATCTCCAATCCCACACCCTTCACTTACAATTCCACTATTCCCGGTTTTTCCATCAAGAATTTGCCACATGACGCCGTTCTTTTCTGTCGACAAATGCTCGTCGACGGGCTTCTCCCTGACAGGTTTACTTTCCCATCTCTGTTCAAGGCCACTGAAGACTTATCCCTAGGAAAACAGTTGCATTGTCACTCGATGAAGTTTGGGTTCGCTTCAGATGCTTGCGTTCAAAACACTGATGTATATGTACTCCATTTGTGGGTGTTTGGTTTCAGCTCAAAAGGTGTTTGA

Protein sequence

MAVPPSLQHISPTLSTKNLIATATAKTSATTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFGFASDACVQNTDVYVLHLWVFGFSSKGV

Homology

[Close]

BLAST of CcUC11G211060 vs. NCBI nr
Match: XP_034225178.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunus dulcis] >XP_034225201.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunus dulcis] >VVA10669.1 PREDICTED: pentatricopeptide [Prunus dulcis] >VVA41861.1 PREDICTED: pentatricopeptide [Prunus dulcis])

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-47
Identity = 111/190 (58.42%), Postives = 135/190 (71.05%), Query Frame = 0


Query: 1   MAVPPSLQHI-------SPTLSTKNLIATA-------TAKTSATTSSP--QHPCLALLDT 60
           MA P SL HI       +P L  K   +TA       TA  ++ T+SP   HPCLALLD 
Sbjct: 1   MAAPLSLHHIRLPFSSDNPILHNKPTTSTAIAAAPITTATKTSRTNSPIEPHPCLALLDK 60

Query: 61  CSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFT 120
           CS++SELKQIHAQLLRTG FFD FTASK+VAFSSL+  GSGSLHYA  V +QI NPT +T
Sbjct: 61  CSTMSELKQIHAQLLRTGLFFDAFTASKVVAFSSLE--GSGSLHYARLVLTQIPNPTTYT 120

Query: 121 YNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFG 175
            NS I G++ K+LP +A+ F ++M++ G +PDRFTFPSLFK+  DL  GKQLHCHS K G
Sbjct: 121 CNSVIRGYTNKDLPREAIFFYQEMIIQGWVPDRFTFPSLFKSCGDLWEGKQLHCHSTKLG 180

[Close]

BLAST of CcUC11G211060 vs. NCBI nr
Match: XP_031269926.1 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Pistacia vera])

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-47
Identity = 103/174 (59.20%), Postives = 128/174 (73.56%), Query Frame = 0


Query: 1   MAVPPSLQHISPTLSTKNLIATATAKTSATTSSPQHPCLALLDTCSSISELKQIHAQLLR 60
           MA P SLQH  P LS+ ++    +      T    +PCL  L+ CS++SEL+QIHAQ+LR
Sbjct: 20  MATPISLQHHRPPLSSHDIPNNYSISIQVQT----YPCLVSLEKCSTLSELQQIHAQMLR 79

Query: 61  TGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNSTIPGFSIKNLPHD 120
           TG FFDP++AS IVAFS+L    SGSLHYA  VFSQISNPT +T NS I G++  NL + 
Sbjct: 80  TGLFFDPYSASNIVAFSALQLQDSGSLHYARQVFSQISNPTTYTCNSLIRGYTNNNLHYQ 139

Query: 121 AVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFGFASDACVQNT 175
           A++F R+M+V GL+PDRFTFPSLFK+  DLS G+QLHCHS KFGFASD+ VQNT
Sbjct: 140 AIVFYREMIVQGLVPDRFTFPSLFKSCVDLSEGRQLHCHSTKFGFASDSYVQNT 189

[Close]

BLAST of CcUC11G211060 vs. NCBI nr
Match: XP_015898151.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 198.4 bits (503), Expect = 5.7e-47
Identity = 112/194 (57.73%), Postives = 133/194 (68.56%), Query Frame = 0


Query: 1   MAVPPSLQHISPTLSTKNLI----------ATATAKTSATTSSP----------QHPCLA 60
           MA P S+ HI P LS+ N I            ATA T+A T++            HPCLA
Sbjct: 1   MAAPLSVHHIRPPLSSDNSILKNPTSSSTTIAATATTAAFTANSIATTNDHPIHPHPCLA 60

Query: 61  LLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNP 120
           LLD C+++S+LKQIHAQLLRTG FFD FTASKIVAF +L     GSL YA  VF+QISNP
Sbjct: 61  LLDKCANVSQLKQIHAQLLRTGLFFDAFTASKIVAFCALQE--HGSLRYARLVFTQISNP 120

Query: 121 TPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHS 175
           T FT NS I G++ + LP +A+LF ++ML  GLLPDRFTFPSLFK+  DL  GKQLHCHS
Sbjct: 121 TTFTCNSIIRGYTNRGLPSEAMLFYQEMLFRGLLPDRFTFPSLFKSCGDLREGKQLHCHS 180

[Close]

BLAST of CcUC11G211060 vs. NCBI nr
Match: TQD83682.1 (hypothetical protein C1H46_030757 [Malus baccata])

HSP 1 Score: 198.0 bits (502), Expect = 7.5e-47
Identity = 111/186 (59.68%), Postives = 132/186 (70.97%), Query Frame = 0


Query: 1   MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSI 60
           MA P SL HI P  S       TK   ATA A T+A    T +P   HPCL LLD CS++
Sbjct: 1   MAAPLSLHHIRPPFSSDIPLLYTKPTTATAIAATAAVATVTKNPIEPHPCLTLLDKCSTM 60

Query: 61  SELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNST 120
           SELKQIHAQLLRTG FFD FTASK+VAFS+L+  GSGSL YA  V +QI NPT +T NS 
Sbjct: 61  SELKQIHAQLLRTGLFFDAFTASKVVAFSALE--GSGSLRYARLVLNQIPNPTTYTCNSV 120

Query: 121 IPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFGFASD 175
           I G++ K+L  DA+LF ++M++ G +PD FTFPSLFK+  DL  GKQLHCHS KFGFASD
Sbjct: 121 IRGYTNKDLNRDAILFYQEMILQGWVPDSFTFPSLFKSCGDLREGKQLHCHSTKFGFASD 180

[Close]

BLAST of CcUC11G211060 vs. NCBI nr
Match: XP_021817716.1 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X1 [Prunus avium] >XP_021817717.1 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X2 [Prunus avium])

HSP 1 Score: 198.0 bits (502), Expect = 7.5e-47
Identity = 108/190 (56.84%), Postives = 132/190 (69.47%), Query Frame = 0


Query: 1   MAVPPSLQHI-------SPTLSTKNLIATATAKTSATTSS---------PQHPCLALLDT 60
           MA P SL HI       +P L  K   +TA A T  TT++           HPCLALLD 
Sbjct: 1   MAAPLSLHHIRLPFSSDNPILHNKPTTSTAIAATPITTATKTSRTNNPIEPHPCLALLDK 60

Query: 61  CSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFT 120
           CS++SELKQIHAQLLRTG FFD FTASK+VAFS+L+  GSGSLHYA  V +QI NPT +T
Sbjct: 61  CSTMSELKQIHAQLLRTGLFFDAFTASKVVAFSALE--GSGSLHYARLVLTQIPNPTTYT 120

Query: 121 YNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFG 175
            NS I G++ K+LP +A+ F ++M++ G +PDRFTFPSLFK+  DL  GKQLHCHS K G
Sbjct: 121 CNSVIRGYTNKDLPREAIFFYQEMIIQGWVPDRFTFPSLFKSCGDLWEGKQLHCHSTKLG 180

[Close]

BLAST of CcUC11G211060 vs. ExPASy Swiss-Prot
Match: Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-21
Identity = 63/150 (42.00%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 35  QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRT---GSGSLHYAC 94
           +HP LALL +CSS S+LK IH  LLRT    D F AS+++A    D T    +  L YA 
Sbjct: 12  KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAY 71

Query: 95  TVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLS 154
            +FSQI NP  F +N  I  FS    P  A  F  QML   + PD  TFP L KA+ ++ 
Sbjct: 72  GIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEME 131

Query: 155 ---LGKQLHCHSMKFGFASDACVQNTDVYV 179
              +G+Q H   ++FGF +D  V+N+ V++
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHM 161

[Close]

BLAST of CcUC11G211060 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-18
Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = 0


Query: 10  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDT-CSSISELKQIHAQLLRTGPFFDPF 69
           +SPT+ + + +      +S + S   +  L L+DT CS++ ELKQIHA L++TG   D  
Sbjct: 1   MSPTILSFSGVTVPAMPSSGSLSGNTY--LRLIDTQCSTMRELKQIHASLIKTGLISDTV 60

Query: 70  TASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQM 129
           TAS+++AF          ++YA  VF++I++  PF +N+ I GFS  + P  A+     M
Sbjct: 61  TASRVLAFCC---ASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDM 120

Query: 130 LVD--GLLPDRFTFPSLFKATEDLSL---GKQLHCHSMKFGFASDACVQNTDVYVLHLWV 184
           L     + P R T+PS+FKA   L     G+QLH   +K G   D+ ++NT   +LH++V
Sbjct: 121 LCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNT---MLHMYV 172

[Close]

BLAST of CcUC11G211060 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-18
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 36  HPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFS 95
           +P L+LL+ C  +  LKQI AQ++  G   DPF +S+++AF +L    S  L Y+  +  
Sbjct: 54  NPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSE--SRYLDYSVKILK 113

Query: 96  QISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDGLL---PDRFTFPSLFKATEDL-- 155
            I NP  F++N TI GFS    P ++ L  +QML  G     PD FT+P LFK   DL  
Sbjct: 114 GIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRL 173

Query: 156 -SLGKQLHCHSMKFGFASDACVQNTDVYV 179
            SLG  +  H +K      + V N  +++
Sbjct: 174 SSLGHMILGHVLKLRLELVSHVHNASIHM 200

[Close]

BLAST of CcUC11G211060 vs. ExPASy Swiss-Prot
Match: O49399 (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-17
Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 10  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFT 69
           I P      L+     K  +  SS   P L+  +   S++E++Q HA +L+TG F D F+
Sbjct: 14  IRPQAYNLRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFS 73

Query: 70  ASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQML 129
           ASK+VAF++ +     ++ YA ++ ++I +P  FT+NS I  ++  + P  A+   R+ML
Sbjct: 74  ASKLVAFAATNPEPK-TVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREML 133

Query: 130 VDGLLPDRFTFPSLFKATE---DLSLGKQLHCHSMKFGFASDACVQNTDVYV 179
           +  + PD+++F  + KA         G+Q+H   +K G  +D  V+NT V V
Sbjct: 134 LGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNV 184

[Close]

BLAST of CcUC11G211060 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-16
Identity = 51/152 (33.55%), Postives = 87/152 (57.24%), Query Frame = 0


Query: 30  TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHY 89
           TT++ +   ++L++ C S+ +LKQ H  ++RTG F DP++ASK+ A ++L  +   SL Y
Sbjct: 25  TTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAAL--SSFASLEY 84

Query: 90  ACTVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDG-LLPDRFTFPSLFKATE 149
           A  VF +I  P  F +N+ I  ++    P  ++     M+ +    P+++TFP L KA  
Sbjct: 85  ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 144

Query: 150 D---LSLGKQLHCHSMKFGFASDACVQNTDVY 178
           +   LSLG+ LH  ++K    SD  V N+ ++
Sbjct: 145 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIH 174

[Close]

BLAST of CcUC11G211060 vs. ExPASy TrEMBL
Match: A0A5E4GQU3 (PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B006710 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 9.6e-48
Identity = 111/190 (58.42%), Postives = 135/190 (71.05%), Query Frame = 0


Query: 1   MAVPPSLQHI-------SPTLSTKNLIATA-------TAKTSATTSSP--QHPCLALLDT 60
           MA P SL HI       +P L  K   +TA       TA  ++ T+SP   HPCLALLD 
Sbjct: 1   MAAPLSLHHIRLPFSSDNPILHNKPTTSTAIAAAPITTATKTSRTNSPIEPHPCLALLDK 60

Query: 61  CSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFT 120
           CS++SELKQIHAQLLRTG FFD FTASK+VAFSSL+  GSGSLHYA  V +QI NPT +T
Sbjct: 61  CSTMSELKQIHAQLLRTGLFFDAFTASKVVAFSSLE--GSGSLHYARLVLTQIPNPTTYT 120

Query: 121 YNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFG 175
            NS I G++ K+LP +A+ F ++M++ G +PDRFTFPSLFK+  DL  GKQLHCHS K G
Sbjct: 121 CNSVIRGYTNKDLPREAIFFYQEMIIQGWVPDRFTFPSLFKSCGDLWEGKQLHCHSTKLG 180

[Close]

BLAST of CcUC11G211060 vs. ExPASy TrEMBL
Match: A0A6P4BGB8 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Ziziphus jujuba OX=326968 GN=LOC107431685 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.8e-47
Identity = 112/194 (57.73%), Postives = 133/194 (68.56%), Query Frame = 0


Query: 1   MAVPPSLQHISPTLSTKNLI----------ATATAKTSATTSSP----------QHPCLA 60
           MA P S+ HI P LS+ N I            ATA T+A T++            HPCLA
Sbjct: 1   MAAPLSVHHIRPPLSSDNSILKNPTSSSTTIAATATTAAFTANSIATTNDHPIHPHPCLA 60

Query: 61  LLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNP 120
           LLD C+++S+LKQIHAQLLRTG FFD FTASKIVAF +L     GSL YA  VF+QISNP
Sbjct: 61  LLDKCANVSQLKQIHAQLLRTGLFFDAFTASKIVAFCALQE--HGSLRYARLVFTQISNP 120

Query: 121 TPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHS 175
           T FT NS I G++ + LP +A+LF ++ML  GLLPDRFTFPSLFK+  DL  GKQLHCHS
Sbjct: 121 TTFTCNSIIRGYTNRGLPSEAMLFYQEMLFRGLLPDRFTFPSLFKSCGDLREGKQLHCHS 180

[Close]

BLAST of CcUC11G211060 vs. ExPASy TrEMBL
Match: A0A6P5SU63 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X1 OS=Prunus avium OX=42229 GN=LOC110759883 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.6e-47
Identity = 108/190 (56.84%), Postives = 132/190 (69.47%), Query Frame = 0


Query: 1   MAVPPSLQHI-------SPTLSTKNLIATATAKTSATTSS---------PQHPCLALLDT 60
           MA P SL HI       +P L  K   +TA A T  TT++           HPCLALLD 
Sbjct: 1   MAAPLSLHHIRLPFSSDNPILHNKPTTSTAIAATPITTATKTSRTNNPIEPHPCLALLDK 60

Query: 61  CSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFT 120
           CS++SELKQIHAQLLRTG FFD FTASK+VAFS+L+  GSGSLHYA  V +QI NPT +T
Sbjct: 61  CSTMSELKQIHAQLLRTGLFFDAFTASKVVAFSALE--GSGSLHYARLVLTQIPNPTTYT 120

Query: 121 YNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFG 175
            NS I G++ K+LP +A+ F ++M++ G +PDRFTFPSLFK+  DL  GKQLHCHS K G
Sbjct: 121 CNSVIRGYTNKDLPREAIFFYQEMIIQGWVPDRFTFPSLFKSCGDLWEGKQLHCHSTKLG 180

[Close]

BLAST of CcUC11G211060 vs. ExPASy TrEMBL
Match: A0A540LBP5 (DYW_deaminase domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_030757 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.6e-47
Identity = 111/186 (59.68%), Postives = 132/186 (70.97%), Query Frame = 0


Query: 1   MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSI 60
           MA P SL HI P  S       TK   ATA A T+A    T +P   HPCL LLD CS++
Sbjct: 1   MAAPLSLHHIRPPFSSDIPLLYTKPTTATAIAATAAVATVTKNPIEPHPCLTLLDKCSTM 60

Query: 61  SELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNST 120
           SELKQIHAQLLRTG FFD FTASK+VAFS+L+  GSGSL YA  V +QI NPT +T NS 
Sbjct: 61  SELKQIHAQLLRTGLFFDAFTASKVVAFSALE--GSGSLRYARLVLNQIPNPTTYTCNSV 120

Query: 121 IPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFGFASD 175
           I G++ K+L  DA+LF ++M++ G +PD FTFPSLFK+  DL  GKQLHCHS KFGFASD
Sbjct: 121 IRGYTNKDLNRDAILFYQEMILQGWVPDSFTFPSLFKSCGDLREGKQLHCHSTKFGFASD 180

[Close]

BLAST of CcUC11G211060 vs. ExPASy TrEMBL
Match: M5VTK1 (DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G236200 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 4.7e-47
Identity = 111/190 (58.42%), Postives = 134/190 (70.53%), Query Frame = 0


Query: 1   MAVPPSLQHI-------SPTLSTKNLIATA-------TAKTSATTSSP--QHPCLALLDT 60
           MA P SL HI       +P L  K   +TA       TA  ++ TSSP   HPCLALLD 
Sbjct: 1   MAAPLSLHHIRLPFSSDNPILHNKPTTSTAIAAAPITTATKTSRTSSPIEPHPCLALLDK 60

Query: 61  CSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFT 120
           CS++SELKQIHAQLLRT  FFD FTASK+VAFSSL+  GSGSLHYA  V +QI NPT +T
Sbjct: 61  CSTMSELKQIHAQLLRTSLFFDAFTASKVVAFSSLE--GSGSLHYARLVLTQIPNPTTYT 120

Query: 121 YNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLSLGKQLHCHSMKFG 175
            NS I G++ K+LP +A+ F ++M++ G +PDRFTFPSLFK+  DL  GKQLHCHS K G
Sbjct: 121 CNSVIRGYTNKDLPCEAIFFYQEMIIQGWVPDRFTFPSLFKSCGDLWEGKQLHCHSTKLG 180

[Close]

BLAST of CcUC11G211060 vs. TAIR 10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 8.1e-23
Identity = 63/150 (42.00%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 35  QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRT---GSGSLHYAC 94
           +HP LALL +CSS S+LK IH  LLRT    D F AS+++A    D T    +  L YA 
Sbjct: 12  KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAY 71

Query: 95  TVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDGLLPDRFTFPSLFKATEDLS 154
            +FSQI NP  F +N  I  FS    P  A  F  QML   + PD  TFP L KA+ ++ 
Sbjct: 72  GIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEME 131

Query: 155 ---LGKQLHCHSMKFGFASDACVQNTDVYV 179
              +G+Q H   ++FGF +D  V+N+ V++
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHM 161

[Close]

BLAST of CcUC11G211060 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19
Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = 0


Query: 10  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDT-CSSISELKQIHAQLLRTGPFFDPF 69
           +SPT+ + + +      +S + S   +  L L+DT CS++ ELKQIHA L++TG   D  
Sbjct: 1   MSPTILSFSGVTVPAMPSSGSLSGNTY--LRLIDTQCSTMRELKQIHASLIKTGLISDTV 60

Query: 70  TASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQM 129
           TAS+++AF          ++YA  VF++I++  PF +N+ I GFS  + P  A+     M
Sbjct: 61  TASRVLAFCC---ASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDM 120

Query: 130 LVD--GLLPDRFTFPSLFKATEDLSL---GKQLHCHSMKFGFASDACVQNTDVYVLHLWV 184
           L     + P R T+PS+FKA   L     G+QLH   +K G   D+ ++NT   +LH++V
Sbjct: 121 LCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNT---MLHMYV 172

[Close]

BLAST of CcUC11G211060 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 36  HPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHYACTVFS 95
           +P L+LL+ C  +  LKQI AQ++  G   DPF +S+++AF +L    S  L Y+  +  
Sbjct: 54  NPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSE--SRYLDYSVKILK 113

Query: 96  QISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDGLL---PDRFTFPSLFKATEDL-- 155
            I NP  F++N TI GFS    P ++ L  +QML  G     PD FT+P LFK   DL  
Sbjct: 114 GIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRL 173

Query: 156 -SLGKQLHCHSMKFGFASDACVQNTDVYV 179
            SLG  +  H +K      + V N  +++
Sbjct: 174 SSLGHMILGHVLKLRLELVSHVHNASIHM 200

[Close]

BLAST of CcUC11G211060 vs. TAIR 10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-18
Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 10  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFT 69
           I P      L+     K  +  SS   P L+  +   S++E++Q HA +L+TG F D F+
Sbjct: 14  IRPQAYNLRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFS 73

Query: 70  ASKIVAFSSLDRTGSGSLHYACTVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQML 129
           ASK+VAF++ +     ++ YA ++ ++I +P  FT+NS I  ++  + P  A+   R+ML
Sbjct: 74  ASKLVAFAATNPEPK-TVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREML 133

Query: 130 VDGLLPDRFTFPSLFKATE---DLSLGKQLHCHSMKFGFASDACVQNTDVYV 179
           +  + PD+++F  + KA         G+Q+H   +K G  +D  V+NT V V
Sbjct: 134 LGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNV 184

[Close]

BLAST of CcUC11G211060 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-17
Identity = 51/152 (33.55%), Postives = 87/152 (57.24%), Query Frame = 0


Query: 30  TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFSSLDRTGSGSLHY 89
           TT++ +   ++L++ C S+ +LKQ H  ++RTG F DP++ASK+ A ++L  +   SL Y
Sbjct: 25  TTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAAL--SSFASLEY 84

Query: 90  ACTVFSQISNPTPFTYNSTIPGFSIKNLPHDAVLFCRQMLVDG-LLPDRFTFPSLFKATE 149
           A  VF +I  P  F +N+ I  ++    P  ++     M+ +    P+++TFP L KA  
Sbjct: 85  ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 144

Query: 150 D---LSLGKQLHCHSMKFGFASDACVQNTDVY 178
           +   LSLG+ LH  ++K    SD  V N+ ++
Sbjct: 145 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIH 174

The following BLAST results are available for this feature:

BLAST of CcUC11G211060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034225178.1	2.0e-47	58.42	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunu...	[more]
XP_031269926.1	3.4e-47	59.20	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Pista...	[more]
XP_015898151.1	5.7e-47	57.73	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Zizip...	[more]
TQD83682.1	7.5e-47	59.68	hypothetical protein C1H46_030757 [Malus baccata]	[more]
XP_021817716.1	7.5e-47	56.84	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isofor...	[more]

BLAST of CcUC11G211060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG16	1.1e-21	42.00	Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	1.5e-18	35.56	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
Q9SJZ3	2.6e-18	36.91	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
O49399	1.7e-17	31.98	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX...	[more]
O82380	2.4e-16	33.55	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]

BLAST of CcUC11G211060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5E4GQU3	9.6e-48	58.42	PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B006710 PE=3 SV...	[more]
A0A6P4BGB8	2.8e-47	57.73	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Ziz...	[more]
A0A6P5SU63	3.6e-47	56.84	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isofor...	[more]
A0A540LBP5	3.6e-47	59.68	DYW_deaminase domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_0307...	[more]
M5VTK1	4.7e-47	58.42	DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G236...	[more]

BLAST of CcUC11G211060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06540.1	8.1e-23	42.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G42920.1	1.1e-19	35.56	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G22410.1	1.9e-19	36.91	SLOW GROWTH 1	[more]
AT4G18840.1	1.2e-18	31.98	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G29760.1	1.7e-17	33.55	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 7..176 e-value: 1.7E-7 score: 32.9
None	No IPR available	PANTHER	PTHR47928:SF46	SUBFAMILY NOT NAMED	coord: 26..175
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 26..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G211060.1	CcUC11G211060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding