CcUC10G207960 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G207960
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr10: 34686267 .. 34686743 (-)
RNA-Seq Expression	CcUC10G207960
Synteny	CcUC10G207960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATTATTAAGTCACTGCCAATACCGTCAGAAAGAGGGACTGAGATTTTCATCATGTCTCAGAGAGACCGTGAGATTCGAAACATATCTGAATTCAATCACCTGTTCATGGATTTCGTCTCAGAAAATGAGCTCGATCTTGCCCTAAAACTGTTGTCCAATATATCCTCTTATGGTTTGGTCCCAAATTCTAGAACATTCTCCATCATGATAAGGTGCTATTGCAAGAAAGGAGAACTGGAAAATGCGGGCAGGGTTTTAGAGCAAATGCTGGGAAAGGGTCATAACCCGAACGATGCAACCATCACAAGTCTCGTGGATGCTTTCTGCAAAAGGGGCAAAATGCAGAAAGCTTTAGAAATGATTGAGGCGGTGGGAAGGGTTGGACGGAAGCCAACCGTTCAGACATACAATTGCTTGTTAAAAGGCCTATGCTACGTTGGGAGAGTGGAAGAGGCATGCGAAATTGTGTAG

mRNA sequence

ATGACGATTATTAAGTCACTGCCAATACCGTCAGAAAGAGGGACTGAGATTTTCATCATGTCTCAGAGAGACCGTGAGATTCGAAACATATCTGAATTCAATCACCTGTTCATGGATTTCGTCTCAGAAAATGAGCTCGATCTTGCCCTAAAACTGTTGTCCAATATATCCTCTTATGGTTTGGTCCCAAATTCTAGAACATTCTCCATCATGATAAGGTGCTATTGCAAGAAAGGAGAACTGGAAAATGCGGGCAGGGTTTTAGAGCAAATGCTGGGAAAGGGTCATAACCCGAACGATGCAACCATCACAAGTCTCGTGGATGCTTTCTGCAAAAGGGGCAAAATGCAGAAAGCTTTAGAAATGATTGAGGCGGTGGGAAGGGTTGGACGGAAGCCAACCGTTCAGACATACAATTGCTTGTTAAAAGGCCTATGCTACGTTGGGAGAGTGGAAGAGGCATGCGAAATTGTGTAG

Coding sequence (CDS)

ATGACGATTATTAAGTCACTGCCAATACCGTCAGAAAGAGGGACTGAGATTTTCATCATGTCTCAGAGAGACCGTGAGATTCGAAACATATCTGAATTCAATCACCTGTTCATGGATTTCGTCTCAGAAAATGAGCTCGATCTTGCCCTAAAACTGTTGTCCAATATATCCTCTTATGGTTTGGTCCCAAATTCTAGAACATTCTCCATCATGATAAGGTGCTATTGCAAGAAAGGAGAACTGGAAAATGCGGGCAGGGTTTTAGAGCAAATGCTGGGAAAGGGTCATAACCCGAACGATGCAACCATCACAAGTCTCGTGGATGCTTTCTGCAAAAGGGGCAAAATGCAGAAAGCTTTAGAAATGATTGAGGCGGTGGGAAGGGTTGGACGGAAGCCAACCGTTCAGACATACAATTGCTTGTTAAAAGGCCTATGCTACGTTGGGAGAGTGGAAGAGGCATGCGAAATTGTGTAG

Protein sequence

MTIIKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV

Homology

[Close]

BLAST of CcUC10G207960 vs. NCBI nr
Match: XP_038904608.1 (pentatricopeptide repeat-containing protein At1g09900-like [Benincasa hispida])

HSP 1 Score: 275.4 bits (703), Expect = 3.1e-70
Identity = 135/158 (85.44%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MTIIKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYG 60
           +T IKSLPIPSE GTEIFIMSQ+  EIRN+SEFN   MDFVSENELDLALKLLSNISSYG
Sbjct: 68  VTRIKSLPIPSEEGTEIFIMSQKRTEIRNVSEFNDRLMDFVSENELDLALKLLSNISSYG 127

Query: 61  LVPNSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKAL 120
           LVPNSRTFSIMIR YCKKGELE AG+VLEQM+G+GHNPNDAT+T LV+AFCKRGK QKAL
Sbjct: 128 LVPNSRTFSIMIRGYCKKGELETAGKVLEQMVGRGHNPNDATVTVLVNAFCKRGKTQKAL 187

Query: 121 EMIEAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           EM+E VGR+GRKPTVQTYNCLLKGLCYVGRVEEACE+V
Sbjct: 188 EMVEMVGRIGRKPTVQTYNCLLKGLCYVGRVEEACEMV 225

[Close]

BLAST of CcUC10G207960 vs. NCBI nr
Match: KAG6580429.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267.3 bits (682), Expect = 8.3e-68
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 4   IKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVP 63
           IKSLPIPSE GTEIFIMSQ+  EI+NI EFN LFM+FVSE+ELDLALKLLSN+SSYGLVP
Sbjct: 77  IKSLPIPSEEGTEIFIMSQKSCEIQNICEFNDLFMEFVSEDELDLALKLLSNLSSYGLVP 136

Query: 64  NSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMI 123
           N RTFSIMIRCYCKKG+LENA RVL QMLG+G NPNDATIT LV+AFCKRGKMQKALEM+
Sbjct: 137 NCRTFSIMIRCYCKKGDLENAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMV 196

Query: 124 EAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           E VGR GRKPTVQ YNCLLKGLCYVGRVEEACE+V
Sbjct: 197 ELVGRNGRKPTVQAYNCLLKGLCYVGRVEEACEMV 231

[Close]

BLAST of CcUC10G207960 vs. NCBI nr
Match: XP_022935128.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 8.3e-68
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 4   IKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVP 63
           IKSLPIPSE GTEIFIMSQ+  EI+NI EFN LFM+FVSE+ELDLALKLLSN+SSYGLVP
Sbjct: 77  IKSLPIPSEEGTEIFIMSQKSCEIQNICEFNDLFMEFVSEDELDLALKLLSNLSSYGLVP 136

Query: 64  NSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMI 123
           N RTFSIMIRCYCKKG+LENA RVL QMLG+G NPNDATIT LV+AFCKRGKMQKALEM+
Sbjct: 137 NCRTFSIMIRCYCKKGDLENAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMV 196

Query: 124 EAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           E VGR GRKPTVQ YNCLLKGLCYVGRVEEACE+V
Sbjct: 197 ELVGRNGRKPTVQAYNCLLKGLCYVGRVEEACEMV 231

[Close]

BLAST of CcUC10G207960 vs. NCBI nr
Match: XP_022982589.1 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 131/155 (84.52%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 4   IKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVP 63
           IKSLPIPSE GTEIFIMSQ+  EI+NI EFN LFM+FVSE+ELDLALKLLSN++SYGLVP
Sbjct: 77  IKSLPIPSEEGTEIFIMSQKSCEIQNICEFNDLFMEFVSEDELDLALKLLSNLTSYGLVP 136

Query: 64  NSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMI 123
           NSRTFSIMIRCYCKKG+L+NA RVL QMLG+G NPNDATIT LV+AFCKRGKMQKALEM+
Sbjct: 137 NSRTFSIMIRCYCKKGDLDNAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMV 196

Query: 124 EAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           E VGR GRKPTVQ YNCLLKGLCYVGRVEEACE+V
Sbjct: 197 ELVGRNGRKPTVQAYNCLLKGLCYVGRVEEACEMV 231

[Close]

BLAST of CcUC10G207960 vs. NCBI nr
Match: XP_023528121.1 (pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 2.7e-66
Identity = 129/155 (83.23%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 4   IKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVP 63
           IKSLPIPSE GTEIFIMSQ+  EI+NI EFN LFM+FVSE+ELDL LKLLSN+SSYGLVP
Sbjct: 77  IKSLPIPSEEGTEIFIMSQKSCEIQNICEFNDLFMEFVSEDELDLGLKLLSNLSSYGLVP 136

Query: 64  NSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMI 123
           N RTFSIMIRCYCKKG+L+NA RVL QMLG G NPNDATIT LV+AFCKRGKMQKA EM+
Sbjct: 137 NCRTFSIMIRCYCKKGDLDNAARVLGQMLGSGCNPNDATITVLVNAFCKRGKMQKAFEMV 196

Query: 124 EAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           E VGR GRKPTVQ YNCLLKGLCYVGRVEEACE+V
Sbjct: 197 ELVGRNGRKPTVQAYNCLLKGLCYVGRVEEACEMV 231

[Close]

BLAST of CcUC10G207960 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 13  RGTEIFIMSQRDREIR-NISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIM 72
           R    F      R+I  ++  +  +   F    ++  A KL   +   GL P+S TF+ +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 73  IRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGR 132
           I  YCK G +++A RV   M+  G +PN  T T+L+D  CK G +  A E++  + ++G 
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 133 KPTVQTYNCLLKGLCYVGRVEEACEIV 159
           +P + TYN ++ GLC  G +EEA ++V
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLV 514

[Close]

BLAST of CcUC10G207960 vs. ExPASy Swiss-Prot
Match: Q9SH26 (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX=3702 GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.3e-18
Identity = 42/129 (32.56%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 29  NISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIMIRCYCKKGELENAGRVL 88
           N+  +N L   F     +D  ++L   +S  GLV N+ T++ +I  + +  + +NA  V 
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458

Query: 89  EQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGRKPTVQTYNCLLKGLCYV 148
           +QM+  G +PN  T  +L+D  CK GK++KA+ + E + R   +PT+ TYN +++G+C  
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 518

Query: 149 GRVEEACEI 158
           G+VE+  ++
Sbjct: 519 GKVEDGWDL 527

[Close]

BLAST of CcUC10G207960 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 29  NISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIMIRCYCKKGELENAGRVL 88
           +I  +N L   F +    D   KLL ++    + PN  TFS++I  + K+G+L  A ++L
Sbjct: 297 DIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLL 356

Query: 89  EQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGRKPTVQTYNCLLKGLCYV 148
           ++M+ +G  PN  T  SL+D FCK  ++++A++M++ +   G  P + T+N L+ G C  
Sbjct: 357 KEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKA 416

Query: 149 GRVEEACEI 158
            R+++  E+
Sbjct: 417 NRIDDGLEL 425

[Close]

BLAST of CcUC10G207960 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-17
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 33  FNHLFMDFVSENELDLALKLLSN-ISSYGLVPNSRTFSIMIRCYCKKGELENAGRVLEQM 92
           FN L   FV+   LD A  +LS+ ++SYG+VP+  T++ +I  Y K+G +  A  VL  M
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415

Query: 93  LGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGRKPTVQTYNCLLKGLCYVGRV 152
             KG  PN  + T LVD FCK GK+ +A  ++  +   G KP    +NCL+   C   R+
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRI 475

Query: 153 EEACEI 158
            EA EI
Sbjct: 476 PEAVEI 481

[Close]

BLAST of CcUC10G207960 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-17
Identity = 44/150 (29.33%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 9   IPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTF 68
           I  +   ++F    R R    + +F+ LF       + DL L L   +   G+  N  T 
Sbjct: 51  IKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTL 110

Query: 69  SIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGR 128
           SIMI C C+  +L  A   + +++  G+ P+  T ++L++  C  G++ +ALE+++ +  
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170

Query: 129 VGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           +G KPT+ T N L+ GLC  G+V +A  ++
Sbjct: 171 MGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

[Close]

BLAST of CcUC10G207960 vs. ExPASy TrEMBL
Match: A0A6J1F9P1 (pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata OX=3662 GN=LOC111442091 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.0e-68
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 4   IKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVP 63
           IKSLPIPSE GTEIFIMSQ+  EI+NI EFN LFM+FVSE+ELDLALKLLSN+SSYGLVP
Sbjct: 77  IKSLPIPSEEGTEIFIMSQKSCEIQNICEFNDLFMEFVSEDELDLALKLLSNLSSYGLVP 136

Query: 64  NSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMI 123
           N RTFSIMIRCYCKKG+LENA RVL QMLG+G NPNDATIT LV+AFCKRGKMQKALEM+
Sbjct: 137 NCRTFSIMIRCYCKKGDLENAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMV 196

Query: 124 EAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           E VGR GRKPTVQ YNCLLKGLCYVGRVEEACE+V
Sbjct: 197 ELVGRNGRKPTVQAYNCLLKGLCYVGRVEEACEMV 231

[Close]

BLAST of CcUC10G207960 vs. ExPASy TrEMBL
Match: A0A6J1J506 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481420 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.3e-68
Identity = 131/155 (84.52%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 4   IKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVP 63
           IKSLPIPSE GTEIFIMSQ+  EI+NI EFN LFM+FVSE+ELDLALKLLSN++SYGLVP
Sbjct: 77  IKSLPIPSEEGTEIFIMSQKSCEIQNICEFNDLFMEFVSEDELDLALKLLSNLTSYGLVP 136

Query: 64  NSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMI 123
           NSRTFSIMIRCYCKKG+L+NA RVL QMLG+G NPNDATIT LV+AFCKRGKMQKALEM+
Sbjct: 137 NSRTFSIMIRCYCKKGDLDNAARVLGQMLGRGCNPNDATITVLVNAFCKRGKMQKALEMV 196

Query: 124 EAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           E VGR GRKPTVQ YNCLLKGLCYVGRVEEACE+V
Sbjct: 197 ELVGRNGRKPTVQAYNCLLKGLCYVGRVEEACEMV 231

[Close]

BLAST of CcUC10G207960 vs. ExPASy TrEMBL
Match: A0A6J1DW66 (pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charantia OX=3673 GN=LOC111024057 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.4e-62
Identity = 119/155 (76.77%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 4   IKSLPIPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVP 63
           I SLP PS+ GTE+FI SQ+D EI+NISEFN LF DFVS  ELDLAL+LLSNISSYGLVP
Sbjct: 70  IGSLPTPSKEGTEMFITSQKDCEIQNISEFNDLFADFVSAEELDLALRLLSNISSYGLVP 129

Query: 64  NSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMI 123
           NSRTFSI IRCYCKKG+L+NA RV +QMLG G NPNDAT+T LV+A C+RGK+++ALEM+
Sbjct: 130 NSRTFSIAIRCYCKKGDLDNAKRVFDQMLGSGCNPNDATVTVLVNALCRRGKIKRALEMV 189

Query: 124 EAVGRVGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           E VGR+GRK TV+TYNCLLKGLCYVGRVEEACE+V
Sbjct: 190 ELVGRIGRKQTVRTYNCLLKGLCYVGRVEEACEMV 224

[Close]

BLAST of CcUC10G207960 vs. ExPASy TrEMBL
Match: A0A5A7TMX5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005890 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.7e-55
Identity = 121/156 (77.56%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 2   TIIKSLPIPSERGTEIFIMSQRDREI--RNISEFNHLFMDFVSENELDLALKLLSNISSY 61
           T IKSLPIP E GTEIF MSQ+D +I  R+ISEFNHLFMDFVSEN+   A KLLSNISSY
Sbjct: 131 TRIKSLPIPLEEGTEIF-MSQKDCQIRTRSISEFNHLFMDFVSENQPHHAQKLLSNISSY 190

Query: 62  GLVPNSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKA 121
           GL PN RT+ IMIR YCKKGEL+NAGRVLEQMLG+GHNPNDATIT LV+AFCKRGK QKA
Sbjct: 191 GLAPNCRTYLIMIRFYCKKGELDNAGRVLEQMLGRGHNPNDATITVLVNAFCKRGKTQKA 250

Query: 122 LEMIEAVGR----VGRKPT--VQTYNCLLKGLCYVG 150
           LEM+E VGR     G KPT  VQTYNCLLKGLCYVG
Sbjct: 251 LEMVELVGRRIGVGGSKPTVQVQTYNCLLKGLCYVG 285

[Close]

BLAST of CcUC10G207960 vs. ExPASy TrEMBL
Match: A0A5D3DMN4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00190 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.3e-54
Identity = 120/156 (76.92%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 2   TIIKSLPIPSERGTEIFIMSQRDREI--RNISEFNHLFMDFVSENELDLALKLLSNISSY 61
           T IKSLPIP E GTEIF MSQ+D +I  R+ISEFN+LFMDFVSEN+   A KLLSNISSY
Sbjct: 53  TRIKSLPIPLEEGTEIF-MSQKDCQIRTRSISEFNYLFMDFVSENQPHHAQKLLSNISSY 112

Query: 62  GLVPNSRTFSIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKA 121
           GL PN RT+ IMIR YCKKGEL+NAGRVLEQMLG+GHNPNDATIT LV+AFCKRGK QKA
Sbjct: 113 GLAPNCRTYLIMIRFYCKKGELDNAGRVLEQMLGRGHNPNDATITVLVNAFCKRGKTQKA 172

Query: 122 LEMIEAVGR----VGRKPT--VQTYNCLLKGLCYVG 150
           LEM+E VGR     G KPT  VQTYNCLLKGLCYVG
Sbjct: 173 LEMVELVGRRIGVGGSKPTVQVQTYNCLLKGLCYVG 207

[Close]

BLAST of CcUC10G207960 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 13  RGTEIFIMSQRDREIR-NISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIM 72
           R    F      R+I  ++  +  +   F    ++  A KL   +   GL P+S TF+ +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 73  IRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGR 132
           I  YCK G +++A RV   M+  G +PN  T T+L+D  CK G +  A E++  + ++G 
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 133 KPTVQTYNCLLKGLCYVGRVEEACEIV 159
           +P + TYN ++ GLC  G +EEA ++V
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLV 514

[Close]

BLAST of CcUC10G207960 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 13  RGTEIFIMSQRDREIR-NISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIM 72
           R    F      R+I  ++  +  +   F    ++  A KL   +   GL P+S TF+ +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 73  IRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGR 132
           I  YCK G +++A RV   M+  G +PN  T T+L+D  CK G +  A E++  + ++G 
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 133 KPTVQTYNCLLKGLCYVGRVEEACEIV 159
           +P + TYN ++ GLC  G +EEA ++V
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLV 514

[Close]

BLAST of CcUC10G207960 vs. TAIR 10
Match: AT1G63400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-19
Identity = 42/129 (32.56%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 29  NISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIMIRCYCKKGELENAGRVL 88
           N+  +N L   F     +D  ++L   +S  GLV N+ T++ +I  + +  + +NA  V 
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458

Query: 89  EQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGRKPTVQTYNCLLKGLCYV 148
           +QM+  G +PN  T  +L+D  CK GK++KA+ + E + R   +PT+ TYN +++G+C  
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 518

Query: 149 GRVEEACEI 158
           G+VE+  ++
Sbjct: 519 GKVEDGWDL 527

[Close]

BLAST of CcUC10G207960 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-18
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 29  NISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTFSIMIRCYCKKGELENAGRVL 88
           +I  +N L   F +    D   KLL ++    + PN  TFS++I  + K+G+L  A ++L
Sbjct: 297 DIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLL 356

Query: 89  EQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGRVGRKPTVQTYNCLLKGLCYV 148
           ++M+ +G  PN  T  SL+D FCK  ++++A++M++ +   G  P + T+N L+ G C  
Sbjct: 357 KEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKA 416

Query: 149 GRVEEACEI 158
            R+++  E+
Sbjct: 417 NRIDDGLEL 425

[Close]

BLAST of CcUC10G207960 vs. TAIR 10
Match: AT1G12620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-18
Identity = 44/150 (29.33%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 9   IPSERGTEIFIMSQRDREIRNISEFNHLFMDFVSENELDLALKLLSNISSYGLVPNSRTF 68
           I  +   ++F    R R    + +F+ LF       + DL L L   +   G+  N  T 
Sbjct: 51  IKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTL 110

Query: 69  SIMIRCYCKKGELENAGRVLEQMLGKGHNPNDATITSLVDAFCKRGKMQKALEMIEAVGR 128
           SIMI C C+  +L  A   + +++  G+ P+  T ++L++  C  G++ +ALE+++ +  
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170

Query: 129 VGRKPTVQTYNCLLKGLCYVGRVEEACEIV 159
           +G KPT+ T N L+ GLC  G+V +A  ++
Sbjct: 171 MGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

The following BLAST results are available for this feature:

BLAST of CcUC10G207960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904608.1	3.1e-70	85.44	pentatricopeptide repeat-containing protein At1g09900-like [Benincasa hispida]	[more]
KAG6580429.1	8.3e-68	85.16	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022935128.1	8.3e-68	85.16	pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata]	[more]
XP_022982589.1	1.1e-67	84.52	pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucur...	[more]
XP_023528121.1	2.7e-66	83.23	pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp...	[more]

BLAST of CcUC10G207960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WVK7	2.8e-18	32.65	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
Q9SH26	6.3e-18	32.56	Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX...	[more]
Q9LPX2	3.1e-17	31.78	Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop...	[more]
Q9FMF6	7.0e-17	39.68	Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop...	[more]
Q9ASZ8	7.0e-17	29.33	Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX...	[more]

BLAST of CcUC10G207960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9P1	4.0e-68	85.16	pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata...	[more]
A0A6J1J506	5.3e-68	84.52	pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cuc...	[more]
A0A6J1DW66	7.4e-62	76.77	pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charanti...	[more]
A0A5A7TMX5	6.7e-55	77.56	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3DMN4	3.3e-54	76.92	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CcUC10G207960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05670.1	2.0e-19	32.65	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	2.0e-19	32.65	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G63400.1	4.5e-19	32.56	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G12775.1	2.2e-18	31.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G12620.1	4.9e-18	29.33	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 102..124 e-value: 3.9E-4 score: 18.4 coord: 67..99 e-value: 1.0E-8 score: 32.8 coord: 137..157 e-value: 8.9E-5 score: 20.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 70..112 e-value: 1.8E-10 score: 40.8
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 130..157 e-value: 7.1E-8 score: 32.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 64..98 score: 12.463056
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 134..158 score: 8.780059
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 99..133 score: 9.941957
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 11..89 e-value: 4.6E-12 score: 47.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 90..158 e-value: 1.1E-18 score: 69.7
None	No IPR available	PANTHER	PTHR47942:SF36	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 4..157
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 4..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G207960.1	CcUC10G207960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding