CcUC10G207230 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G207230
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 34111119 .. 34112930 (+)
RNA-Seq Expression	CcUC10G207230
Synteny	CcUC10G207230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCTTCTTTAAAGTACAGTTTACTATTTTTCTACTATTTTCTTAATGATGTACGGAGATTGGGTTCAAAAGTATCAGATAATAATTTTCCAAATCATGATAATGTAGAAAATTAGTAAACGAATACAATGGGAAAGATTCAAACTCTTCAACACCTAGTAAAGAAAAGCTATAGAATAGAGCCTCCAGAGTCGCAGTCTCGTTTACTAAGGCCTATGGTCTTTGAGTAACACCTATCCCGAGGTTCTGTTTGAATCGTTGGGTAAAATCCTTGATACCTTCAAAGTTAACTTTGGAGTAAACGCGTTCTCAGAAAAAAAGATAAAAATCAGAAACTAAGAAAGCTTTAATTTAGGGAATTTCACATCTGGGAGAAAAGATTAGATCATGATCTCATTATGATTCTTGGGAGGGAAATGGTTCACTTCATTCTTGCTGAAGGTTTTCTGTGTTAGTGTATTAAATGAATTGTAGTTTTTCATACATTTTTACATTTATTATCATAGAGCTTTTCCTAATCCTAAGTATAGCTGCAAATGATGCAATGATCAGAGAATAATCTTTCTATGATGCTTCCCTTTTGAATTATATAACTCTTACTCTGCTTGTTCCATAGGTGTATTCCATAAGCCTCGTTATTTAGCTGAGATAATTTTGCTCTTGCCCAGCTTGCAGCAGCTCGGTTTTCTGGCTTCTTAAAAAGTTCACCAATCTTAATCCAGTCCACTGGGTAGAAAGCTGCAGGTGGCAATACAGTGACGTTGAAACCAGGTTTAGCTCTGACTCCTGTTACCTTTGCTATTACTCTGGAGACCAGAAAAGGTCCATTATATCCCCATCTGCTCCCATCAAAATTTAATGCAAAATTTTCCATGAATTTCTCTAGAAGTGGATGCTTCTTATCAAAAACAAGAACAGCATTATTCAGCATTGTCCAGTTCTTAGATACCGGATCAATACTTTGTGCGCCAATTGAGTTCTTCAACCCCGTGAAAGACTTCAAAACAATAAAGTCTGTATCTACGTAAACACCTCCATACTTGTATAAAACTACAAGTCTCATCAGGTTAGATAGATTCTGAGCTAATGGAATCTGACCTGGGTCTTTTTTTCCACTCTTCATCTCATCAAACCAAACCTCAACCGGGGTGTTTTTGAATAGCGAAGGCAAGTCCGGTGCGATTGCCAGAATTTTAAATCCTTGATCAAGTAGAGGTTTAAGAATCTTGCAGCCTCTTTCTGAATCCAGCGTTCTTGATAGAATAGTTAAGCATCCACGGGGGTGAGACTTAAAAACACTTTCTGCTGCCATTAATTCTCTTTCCCTGAAAGACCTTGCTGGAGATACCCATGTCATGAAGAATTGTATCTCACACTCATGGCTGAGAAACTTCAGAAGTCGATTATGAAACTGCTGTGTCAAGTTGTTTGACTGCAAAATTCGAAAGTCGGAAAGGTGCTTCCTAAACCAATCAATTCTTGCTTTTTTTGCTGAAAGATTGGATGGAACTACAAAGGAATCAAAAGTTTCACTATCATCATCATCTCTGTTTTCTGGTGAGGACTGCAGTGGCTCTCCAACTAAAGTCCGCTCAATTTGCACTTGTGTCATGCATGTAATTGTTGAGTTTGAATTTCCTTTCTCATCTATGGATACTGTTCGAACCGAAACTTTGTAGATTATGCCATCTCCACATATAAGGAAGATGATGGAAGCAAGCAAGATGCTTGGCAATATGGGTGATGTAACACACCTTTCAGACATTTCTCCCAGGAGGCTATTCCCACGAAAAGTGAAGTTTTCATAA

mRNA sequence

ATGATTGCTTCTTTAAAGTACAGTTTACTATTTTTCTACTATTTTCTTAATGATGTACGGAGATTGGGTTCAAAAGTATCAGATAATAATTTTCCAAATCATGATAATGTAGAAAATTATTTTTCATACATTTTTACATTTATTATCATAGAGCTTTTCCTAATCCTAACTTGCAGCAGCTCGGTTTTCTGGCTTCTTAAAAAGTTCACCAATCTTAATCCAGTCCACTGGGTAGAAAGCTGCAGGTGGCAATACAGTGACGTTGAAACCAGAAGTGGATGCTTCTTATCAAAAACAAGAACAGCATTATTCAGCATTGTCCAGTTCTTAGATACCGGATCAATACTTTGTGCGCCAATTGAGTTCTTCAACCCCGTGAAAGACTTCAAAACAATAAAGTCTCCTCTTTCTGAATCCAGCGTTCTTGATAGAATAGTTAAGCATCCACGGGGATTGGATGGAACTACAAAGGAATCAAAAGTTTCACTATCATCATCATCTCTGTTTTCTGGTGAGGACTGCAGTGGCTCTCCAACTAAAGTCCGCTCAATTTGCACTTGTGTCATGCATATTATGCCATCTCCACATATAAGGAAGATGATGGAAGCAAGCAAGATGCTTGGCAATATGGGTGATGTAACACACCTTTCAGACATTTCTCCCAGGAGGCTATTCCCACGAAAAGTGAAGTTTTCATAA

Coding sequence (CDS)

ATGATTGCTTCTTTAAAGTACAGTTTACTATTTTTCTACTATTTTCTTAATGATGTACGGAGATTGGGTTCAAAAGTATCAGATAATAATTTTCCAAATCATGATAATGTAGAAAATTATTTTTCATACATTTTTACATTTATTATCATAGAGCTTTTCCTAATCCTAACTTGCAGCAGCTCGGTTTTCTGGCTTCTTAAAAAGTTCACCAATCTTAATCCAGTCCACTGGGTAGAAAGCTGCAGGTGGCAATACAGTGACGTTGAAACCAGAAGTGGATGCTTCTTATCAAAAACAAGAACAGCATTATTCAGCATTGTCCAGTTCTTAGATACCGGATCAATACTTTGTGCGCCAATTGAGTTCTTCAACCCCGTGAAAGACTTCAAAACAATAAAGTCTCCTCTTTCTGAATCCAGCGTTCTTGATAGAATAGTTAAGCATCCACGGGGATTGGATGGAACTACAAAGGAATCAAAAGTTTCACTATCATCATCATCTCTGTTTTCTGGTGAGGACTGCAGTGGCTCTCCAACTAAAGTCCGCTCAATTTGCACTTGTGTCATGCATATTATGCCATCTCCACATATAAGGAAGATGATGGAAGCAAGCAAGATGCTTGGCAATATGGGTGATGTAACACACCTTTCAGACATTTCTCCCAGGAGGCTATTCCCACGAAAAGTGAAGTTTTCATAA

Protein sequence

MIASLKYSLLFFYYFLNDVRRLGSKVSDNNFPNHDNVENYFSYIFTFIIIELFLILTCSSSVFWLLKKFTNLNPVHWVESCRWQYSDVETRSGCFLSKTRTALFSIVQFLDTGSILCAPIEFFNPVKDFKTIKSPLSESSVLDRIVKHPRGLDGTTKESKVSLSSSSLFSGEDCSGSPTKVRSICTCVMHIMPSPHIRKMMEASKMLGNMGDVTHLSDISPRRLFPRKVKFS

Homology

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BLAST of CcUC10G207230 vs. NCBI nr
Match: KAG7027900.1 (hypothetical protein SDJN02_09079, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-19
Identity = 73/162 (45.06%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 58  CSSSVFWLLKKFTNLNPVHWVESCRWQYSDVETRSGCFLSKTRTALFSIVQFLDTGSILC 117
           C SSV WLLKKFTNL PVHWVE CR QY DV+T S                         
Sbjct: 22  CRSSVSWLLKKFTNLGPVHWVECCRRQYGDVKTWSS------------------------ 81

Query: 118 APIEFFNPVKDFKTIKSPLSESSVLDRIVKHPRGLDGTTKESKVSL-SSSSLFSGEDCSG 177
                              S S  L       + L+GT KESKV L SSSSLFSGED SG
Sbjct: 82  -------------------SGSGYLCYYSGDQKRLNGTIKESKVPLSSSSSLFSGEDFSG 131

Query: 178 SPTKVRSICTCVMHIMPSPHIRKMMEASKMLGNMGDVTHLSD 219
           S         CV HIMPSPH + MM ASKM+GNMG +  L D
Sbjct: 142 S---------CVTHIMPSPHRKMMMAASKMVGNMGCLLGLLD 131

The following BLAST results are available for this feature:

BLAST of CcUC10G207230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027900.1	6.2e-19	45.06	hypothetical protein SDJN02_09079, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CcUC10G207230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G207230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G207230 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G207230.1	CcUC10G207230.1	mRNA