CcUC10G206930 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206930
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Nuclear transport factor 2 (NTF2) family protein
Location	CicolChr10: 33855458 .. 33856953 (-)
RNA-Seq Expression	CcUC10G206930
Synteny	CcUC10G206930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGTCCCTTTGTTCTTACAGAAAGAGCCCAAGAGAAGGCCCACCGGATGGTATTACTGGCCCAGCAGGCCCTAAAATTTTGGGCCTATTAAAACTGAACCCACCTTCTCTTCTCTAAAGTTTCCAAAACTGACCTCTCCTCTCCCAACGCCAGAGGTCCAGGTCTCTCCTCTTCCTCTACAGTTTATGAACGTATCGCCGTCGCTCTTTGAAGATTGAAGTGAAGCCCTAATTTCATAGCCTAAAACTCATCTTACTTGATCTCTCTCACCTCTACCTGTACGCAGGTTCCAGCAGTTAATTACCTTGTTATGTTGTAAATTCCCTCGACCATGGCGCTTCATACATCCAATTTATGCTGCAATGTGAGTTCTACTTCTCTTCTTTGATTGTCTTCTACCGTTAAAATCAATTTATTTTGTTCTTCTCTTTCTTCTTTATATCATTAATGCCTTTTCATGTGCATTAATTGCTGTAATGTAATACATTAATATCCCTTCTTCGTTCTACTAAATTCTTTCTCGGTTCTTTTTCGTAATCTTTATCTGGAATCTGAACGGTAATTTTGAAAAATTTCAGTGATATTATGATTTTGTAGGATCATGTTACCTTCATCTGCAATCGGAAGAGCGTGCACCATTCGCGAGCGGTGTTTCATCATGTTCCTTCTGCTCTTCCCAAGAAATATGAAATTGGTTTGGTTAAAGCGTCTAGAGGAGGATGTGGATTTCTTTTTCCCTCTAGTCTTCATCATGTTGATTCAAGGAATGGAAATTTCTGTAAGTTTCCGTGAATTTTTATGAAATCTGAAATCTCGAGCTACTGCAATGGATATATTATGTAAAAGATTAGATGTATATACAGAGTTTTGTATAGTTTCACTTTGAATTTTCTTCAGTAAAATAGCATTTTGTTAATATCTAGTGCAGGGCCCTGCAAACAAACTTCTAGGACGCTCTCATTTCGACCTTGTCAACTGAAAGCTGAGAATTCCAGTGGTGAAAGCATTATACTTGATGCAGAAACTTTGGAGCAGGACTTACAAAACGCCATTGCAAATGAAGACTACGCCAGAGCCGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAGGCTTCAGTATTGGCAGCCAATGCTAAGTTTTACGAATCGTTTCAGACTGGGGACCTTGCCGCAATGCAAACTCTTTGGGCACAAGGAGAAAGTGTCTGCTGTGTGCACCCGGGCATGAGGGGGATATCTGGGTATGACGATGTCGTAACGAGCTGGGAGTATGTATGGGCGAATTATGAGTTCCCATTGGAGATTCAACTGAAGGACGTTCAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACAAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAAAACTAATGGTCAATGGTTCATCCGTATTCACCATGCCTCACCCATAGATTTGTAA

mRNA sequence

ATGATAGGTCCCTTTGTTCTTACAGAAAGAGCCCAAGAGAAGGCCCACCGGATGGATCATGTTACCTTCATCTGCAATCGGAAGAGCGTGCACCATTCGCGAGCGGTGTTTCATCATGTTCCTTCTGCTCTTCCCAAGAAATATGAAATTGGTTTGGTTAAAGCGTCTAGAGGAGGATGTGGATTTCTTTTTCCCTCTAGTCTTCATCATGTTGATTCAAGGAATGGAAATTTCTGGCCCTGCAAACAAACTTCTAGGACGCTCTCATTTCGACCTTGTCAACTGAAAGCTGAGAATTCCAGTGGTGAAAGCATTATACTTGATGCAGAAACTTTGGAGCAGGACTTACAAAACGCCATTGCAAATGAAGACTACGCCAGAGCCGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAGGCTTCAGTATTGGCAGCCAATGCTAAGTTTTACGAATCGTTTCAGACTGGGGACCTTGCCGCAATGCAAACTCTTTGGGCACAAGGAGAAAGTGTCTGCTGTGTGCACCCGGGCATGAGGGGGATATCTGGGTATGACGATGTCGTAACGAGCTGGGAGTATGTATGGGCGAATTATGAGTTCCCATTGGAGATTCAACTGAAGGACGTTCAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACAAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAAAACTAATGGTCAATGGTTCATCCGTATTCACCATGCCTCACCCATAGATTTGTAA

Coding sequence (CDS)

ATGATAGGTCCCTTTGTTCTTACAGAAAGAGCCCAAGAGAAGGCCCACCGGATGGATCATGTTACCTTCATCTGCAATCGGAAGAGCGTGCACCATTCGCGAGCGGTGTTTCATCATGTTCCTTCTGCTCTTCCCAAGAAATATGAAATTGGTTTGGTTAAAGCGTCTAGAGGAGGATGTGGATTTCTTTTTCCCTCTAGTCTTCATCATGTTGATTCAAGGAATGGAAATTTCTGGCCCTGCAAACAAACTTCTAGGACGCTCTCATTTCGACCTTGTCAACTGAAAGCTGAGAATTCCAGTGGTGAAAGCATTATACTTGATGCAGAAACTTTGGAGCAGGACTTACAAAACGCCATTGCAAATGAAGACTACGCCAGAGCCGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAGGCTTCAGTATTGGCAGCCAATGCTAAGTTTTACGAATCGTTTCAGACTGGGGACCTTGCCGCAATGCAAACTCTTTGGGCACAAGGAGAAAGTGTCTGCTGTGTGCACCCGGGCATGAGGGGGATATCTGGGTATGACGATGTCGTAACGAGCTGGGAGTATGTATGGGCGAATTATGAGTTCCCATTGGAGATTCAACTGAAGGACGTTCAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACAAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAAAACTAATGGTCAATGGTTCATCCGTATTCACCATGCCTCACCCATAGATTTGTAA

Protein sequence

MIGPFVLTERAQEKAHRMDHVTFICNRKSVHHSRAVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNGNFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLKALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEYVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIRIHHASPIDL

Homology

[Close]

BLAST of CcUC10G206930 vs. NCBI nr
Match: XP_038904182.1 (uncharacterized protein LOC120090530 [Benincasa hispida] >XP_038904693.1 uncharacterized protein LOC120091000 [Benincasa hispida])

HSP 1 Score: 452.2 bits (1162), Expect = 3.1e-123
Identity = 220/249 (88.35%), Postives = 233/249 (93.57%), Query Frame = 0


Query: 19  DHVTFICNRKSVH--HSRAVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           DHVTFICNRKSV    + AVFHH+PSALPK+ EIGLVK+ RGGCGFLFPSSL +V SRNG
Sbjct: 12  DHVTFICNRKSVRCLQNFAVFHHLPSALPKQCEIGLVKSCRGGCGFLFPSSLRYVASRNG 71

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF P KQTSRTLSFRPCQLKAENSSGESI LDAETLEQDLQNAIA+EDYARAAQIRDTLK
Sbjct: 72  NFRPWKQTSRTLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDYARAAQIRDTLK 131

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK SVLAANAKFY+SFQTGDLA MQTLWA+G+SVCCVHPGMRGISGY+DV+TSWE
Sbjct: 132 ALQEDSKTSVLAANAKFYKSFQTGDLATMQTLWARGDSVCCVHPGMRGISGYNDVITSWE 191

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWF+ 
Sbjct: 192 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFVC 251

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 252 IHHASPIDL 260

[Close]

BLAST of CcUC10G206930 vs. NCBI nr
Match: XP_004137747.1 (uncharacterized protein LOC101219393 [Cucumis sativus] >KGN58815.1 hypothetical protein Csa_001436 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 1.2e-116
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 19  DHVTFICNRKSVHHSR--AVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           D+VTFI +RKSV  S+  +VFHHVPSA PK+ EI LV +S GG GFL PS+  HV SRNG
Sbjct: 12  DYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLPSNFRHVGSRNG 71

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF PCKQ SR LSFRPCQLKAENSSGESI LDAETLEQDLQNAIA+EDYARAA+IRDTLK
Sbjct: 72  NFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDYARAAEIRDTLK 131

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK  VL ANAKFYESF+TGDLAAMQTLWA+G SVCCVHPGMRGISGYDDV+TSWE
Sbjct: 132 ALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGISGYDDVITSWE 191

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKD+QVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI 
Sbjct: 192 YVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFIC 251

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 252 IHHASPIDL 260

[Close]

BLAST of CcUC10G206930 vs. NCBI nr
Match: TYK25003.1 (F-box protein SKIP8 [Cucumis melo var. makuwa])

HSP 1 Score: 424.9 bits (1091), Expect = 5.2e-115
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 19  DHVTFICNRKSVHHSR--AVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           D+VTFI N KSV  S+  +VFHHVPSALPK+ EI LVK+S GG GFL P++L HV SR+G
Sbjct: 39  DYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLPTNLRHVVSRDG 98

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF PCKQ SR LSF P QLKAENSSGESI LDAETLEQDLQNAIANEDYARAA+IRDTLK
Sbjct: 99  NFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDYARAAEIRDTLK 158

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK  VL ANAKFYESF+TGDLAAMQTLWA+G SVCCVHPGMRGISGYDDV+TSWE
Sbjct: 159 ALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGISGYDDVITSWE 218

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKD+QVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI 
Sbjct: 219 YVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFIC 278

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 279 IHHASPIDL 287

[Close]

BLAST of CcUC10G206930 vs. NCBI nr
Match: XP_023539336.1 (uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 424.9 bits (1091), Expect = 5.2e-115
Identity = 208/248 (83.87%), Postives = 226/248 (91.13%), Query Frame = 0


Query: 20  HVTFICNRKSVHHSRA--VFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNGN 79
           +VTFI NRKSV  S++  VFHHVPSA PK+Y+IGLVKAS GGCGFLFPS    + S  GN
Sbjct: 20  YVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFPSIPRCLGSTIGN 79

Query: 80  FWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLKA 139
           F PCK ++R LSFRPCQLKAENSSGESI LDAETL+QDLQNAIA+EDYARAA+IRDTLKA
Sbjct: 80  FRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDYARAAEIRDTLKA 139

Query: 140 LQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEY 199
           LQEDSKASV AANAKFYESF+ GDLAAMQTLWA+G+SVCCVHPGMRGISGYD+V+TSWEY
Sbjct: 140 LQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEY 199

Query: 200 VWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIRI 259
           VWANYEFPLEIQLKDV+VHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI I
Sbjct: 200 VWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICI 259

Query: 260 HHASPIDL 266
           HHASPIDL
Sbjct: 260 HHASPIDL 267

[Close]

BLAST of CcUC10G206930 vs. NCBI nr
Match: XP_008442487.1 (PREDICTED: uncharacterized protein LOC103486341 [Cucumis melo] >KAA0044135.1 F-box protein SKIP8 [Cucumis melo var. makuwa])

HSP 1 Score: 424.9 bits (1091), Expect = 5.2e-115
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 19  DHVTFICNRKSVHHSR--AVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           D+VTFI N KSV  S+  +VFHHVPSALPK+ EI LVK+S GG GFL P++L HV SR+G
Sbjct: 12  DYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLPTNLRHVVSRDG 71

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF PCKQ SR LSF P QLKAENSSGESI LDAETLEQDLQNAIANEDYARAA+IRDTLK
Sbjct: 72  NFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDYARAAEIRDTLK 131

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK  VL ANAKFYESF+TGDLAAMQTLWA+G SVCCVHPGMRGISGYDDV+TSWE
Sbjct: 132 ALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGISGYDDVITSWE 191

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKD+QVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI 
Sbjct: 192 YVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFIC 251

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 252 IHHASPIDL 260

[Close]

BLAST of CcUC10G206930 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-11
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 145 SVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEYVWANYEF 204
           ++++ N +F+   +   L AM  LW   + V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 205 PLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIRIHHAS 262
             + Q+  V+     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of CcUC10G206930 vs. ExPASy TrEMBL
Match: A0A0A0LA11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 6.0e-117
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 19  DHVTFICNRKSVHHSR--AVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           D+VTFI +RKSV  S+  +VFHHVPSA PK+ EI LV +S GG GFL PS+  HV SRNG
Sbjct: 12  DYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLPSNFRHVGSRNG 71

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF PCKQ SR LSFRPCQLKAENSSGESI LDAETLEQDLQNAIA+EDYARAA+IRDTLK
Sbjct: 72  NFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDYARAAEIRDTLK 131

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK  VL ANAKFYESF+TGDLAAMQTLWA+G SVCCVHPGMRGISGYDDV+TSWE
Sbjct: 132 ALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGISGYDDVITSWE 191

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKD+QVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI 
Sbjct: 192 YVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFIC 251

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 252 IHHASPIDL 260

[Close]

BLAST of CcUC10G206930 vs. ExPASy TrEMBL
Match: A0A5D3DMZ3 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001210 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.5e-115
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 19  DHVTFICNRKSVHHSR--AVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           D+VTFI N KSV  S+  +VFHHVPSALPK+ EI LVK+S GG GFL P++L HV SR+G
Sbjct: 39  DYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLPTNLRHVVSRDG 98

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF PCKQ SR LSF P QLKAENSSGESI LDAETLEQDLQNAIANEDYARAA+IRDTLK
Sbjct: 99  NFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDYARAAEIRDTLK 158

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK  VL ANAKFYESF+TGDLAAMQTLWA+G SVCCVHPGMRGISGYDDV+TSWE
Sbjct: 159 ALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGISGYDDVITSWE 218

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKD+QVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI 
Sbjct: 219 YVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFIC 278

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 279 IHHASPIDL 287

[Close]

BLAST of CcUC10G206930 vs. ExPASy TrEMBL
Match: A0A5A7TRW4 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004880 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.5e-115
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 19  DHVTFICNRKSVHHSR--AVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           D+VTFI N KSV  S+  +VFHHVPSALPK+ EI LVK+S GG GFL P++L HV SR+G
Sbjct: 12  DYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLPTNLRHVVSRDG 71

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF PCKQ SR LSF P QLKAENSSGESI LDAETLEQDLQNAIANEDYARAA+IRDTLK
Sbjct: 72  NFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDYARAAEIRDTLK 131

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK  VL ANAKFYESF+TGDLAAMQTLWA+G SVCCVHPGMRGISGYDDV+TSWE
Sbjct: 132 ALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGISGYDDVITSWE 191

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKD+QVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI 
Sbjct: 192 YVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFIC 251

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 252 IHHASPIDL 260

[Close]

BLAST of CcUC10G206930 vs. ExPASy TrEMBL
Match: A0A1S3B5S8 (uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.5e-115
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 19  DHVTFICNRKSVHHSR--AVFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNG 78
           D+VTFI N KSV  S+  +VFHHVPSALPK+ EI LVK+S GG GFL P++L HV SR+G
Sbjct: 12  DYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLPTNLRHVVSRDG 71

Query: 79  NFWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLK 138
           NF PCKQ SR LSF P QLKAENSSGESI LDAETLEQDLQNAIANEDYARAA+IRDTLK
Sbjct: 72  NFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDYARAAEIRDTLK 131

Query: 139 ALQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWE 198
           ALQEDSK  VL ANAKFYESF+TGDLAAMQTLWA+G SVCCVHPGMRGISGYDDV+TSWE
Sbjct: 132 ALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGISGYDDVITSWE 191

Query: 199 YVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIR 258
           YVWANYEFPLEIQLKD+QVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI 
Sbjct: 192 YVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFIC 251

Query: 259 IHHASPIDL 266
           IHHASPIDL
Sbjct: 252 IHHASPIDL 260

[Close]

BLAST of CcUC10G206930 vs. ExPASy TrEMBL
Match: A0A6J1I6J4 (uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.1e-113
Identity = 205/248 (82.66%), Postives = 224/248 (90.32%), Query Frame = 0


Query: 20  HVTFICNRKSVHHSRA--VFHHVPSALPKKYEIGLVKASRGGCGFLFPSSLHHVDSRNGN 79
           +VTFI NRK+V  S++  VFHHVPSALPK+Y+IG VK S GG GFLFPS    + S  GN
Sbjct: 13  YVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFPSIPRCLGSTIGN 72

Query: 80  FWPCKQTSRTLSFRPCQLKAENSSGESIILDAETLEQDLQNAIANEDYARAAQIRDTLKA 139
           F PCKQ++R LSFRPCQLKAENSSGESI LDAETL+QDLQNAIA+EDYARAA+IRDTLKA
Sbjct: 73  FRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDYARAAEIRDTLKA 132

Query: 140 LQEDSKASVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEY 199
           LQEDSKASV AANAKFYESF+ GDLAAMQTLWA+G+SVCCVHPGMRGI GYD+V+TSWEY
Sbjct: 133 LQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGILGYDNVMTSWEY 192

Query: 200 VWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIRI 259
           VWANYEFPLEIQLKDV+VHARGDVGYVTCVELVKTKGSSWGGQFVTNVFE+ NGQWFI I
Sbjct: 193 VWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICI 252

Query: 260 HHASPIDL 266
           HHASPIDL
Sbjct: 253 HHASPIDL 260

[Close]

BLAST of CcUC10G206930 vs. TAIR 10
Match: AT3G09250.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-66
Identity = 129/229 (56.33%), Postives = 166/229 (72.49%), Query Frame = 0


Query: 44  LPKKYEI--GLVKASRGGCGFLFPSSLHHVDSRNGNFWPCKQTSRTLSFRPCQLKAENSS 103
           LPK Y I   +V AS       F S+  H+  +N    PC +       RPC++K E ++
Sbjct: 31  LPKSYPIHCNMVSASN-----TFGSA--HLKLQNKE--PCSR------LRPCRVKREENN 90

Query: 104 G----ESIILDAETLEQDLQNAIANEDYARAAQIRDTLKALQEDSKASVLAANAKFYESF 163
                ESI +D  TL+QDL+ A+  E+Y  AA+IRD LK LQED+KASVL+AN++FY+SF
Sbjct: 91  QTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSF 150

Query: 164 QTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEYVWANYEFPLEIQLKDVQVHA 223
           + GDLAAMQ+LW++  + CCVHPG +GI+GYD V+ SWE VW NYEFPL I+LKDV+VH 
Sbjct: 151 RNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHV 210

Query: 224 RGDVGYVTCVELVKTKG-SSWGGQFVTNVFEKTNGQWFIRIHHASPIDL 266
           RG+VGYVTC+E VKTKG SSWG QFV+NVFE+ +GQWFI IHHASP+D+
Sbjct: 211 RGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWFICIHHASPVDI 244

[Close]

BLAST of CcUC10G206930 vs. TAIR 10
Match: AT3G09250.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 228.4 bits (581), Expect = 6.7e-60
Identity = 120/217 (55.30%), Postives = 155/217 (71.43%), Query Frame = 0


Query: 44  LPKKYEI--GLVKASRGGCGFLFPSSLHHVDSRNGNFWPCKQTSRTLSFRPCQLKAENSS 103
           LPK Y I   +V AS       F S+  H+  +N    PC +       RPC++K E ++
Sbjct: 17  LPKSYPIHCNMVSASN-----TFGSA--HLKLQNKE--PCSR------LRPCRVKREENN 76

Query: 104 G----ESIILDAETLEQDLQNAIANEDYARAAQIRDTLKALQEDSKASVLAANAKFYESF 163
                ESI +D  TL+QDL+ A+  E+Y  AA+IRD LK LQED+KASVL+AN++FY+SF
Sbjct: 77  QTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSF 136

Query: 164 QTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEYVWANYEFPLEIQLKDVQVHA 223
           + GDLAAMQ+LW++  + CCVHPG +GI+GYD V+ SWE VW NYEFPL I+LKDV+VH 
Sbjct: 137 RNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHV 196

Query: 224 RGDVGYVTCVELVKTKG-SSWGGQFVTNVFEKTNGQW 254
           RG+VGYVTC+E VKTKG SSWG QFV+NVFE+ +GQW
Sbjct: 197 RGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQW 218

[Close]

BLAST of CcUC10G206930 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 145 SVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEYVWANYEF 204
           ++++ N +F+   +   L AM  LW   + V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 205 PLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIRIHHAS 262
             + Q+  V+     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of CcUC10G206930 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 145 SVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEYVWANYEF 204
           ++++ N +F+   +   L AM  LW   + V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 205 PLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIRIHHAS 262
             + Q+  V+     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of CcUC10G206930 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 145 SVLAANAKFYESFQTGDLAAMQTLWAQGESVCCVHPGMRGISGYDDVVTSWEYVWANYEF 204
           ++++ N +F+   +   L AM  LW   + V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 205 PLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFEKTNGQWFIRIHHAS 262
             + Q+  V+     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

The following BLAST results are available for this feature:

BLAST of CcUC10G206930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904182.1	3.1e-123	88.35	uncharacterized protein LOC120090530 [Benincasa hispida] >XP_038904693.1 unchara...	[more]
XP_004137747.1	1.2e-116	84.34	uncharacterized protein LOC101219393 [Cucumis sativus] >KGN58815.1 hypothetical ...	[more]
TYK25003.1	5.2e-115	84.34	F-box protein SKIP8 [Cucumis melo var. makuwa]	[more]
XP_023539336.1	5.2e-115	83.87	uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo]	[more]
XP_008442487.1	5.2e-115	84.34	PREDICTED: uncharacterized protein LOC103486341 [Cucumis melo] >KAA0044135.1 F-b...	[more]

BLAST of CcUC10G206930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YV9	1.9e-11	30.77	F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1	[more]

BLAST of CcUC10G206930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA11	6.0e-117	84.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1	[more]
A0A5D3DMZ3	2.5e-115	84.34	F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G...	[more]
A0A5A7TRW4	2.5e-115	84.34	F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G...	[more]
A0A1S3B5S8	2.5e-115	84.34	uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=...	[more]
A0A6J1I6J4	3.1e-113	82.66	uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086...	[more]

BLAST of CcUC10G206930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09250.1	1.6e-66	56.33	Nuclear transport factor 2 (NTF2) family protein	[more]
AT3G09250.2	6.7e-60	55.30	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.1	1.4e-12	30.77	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.2	1.4e-12	30.77	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.3	1.4e-12	30.77	Nuclear transport factor 2 (NTF2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001943	UVR domain	PFAM	PF02151	UVR	coord: 110..140 e-value: 5.3E-7 score: 29.2
None	No IPR available	GENE3D	3.10.450.50		coord: 135..264 e-value: 3.2E-41 score: 142.7
None	No IPR available	PANTHER	PTHR34957	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN	coord: 20..264
IPR037401	SnoaL-like domain	PFAM	PF13474	SnoaL_3	coord: 146..262 e-value: 1.4E-23 score: 83.6
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 141..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G206930.1	CcUC10G206930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding