CcUC10G206450 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206450
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Type-2 metallothionein
Location	CicolChr10: 33471067 .. 33472287 (+)
RNA-Seq Expression	CcUC10G206450
Synteny	CcUC10G206450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACCCCACAAAAGACCCATACAACTGAAAATCATACGAGTGATTAACACGAGAGATACGTGGAAGAGAACAGCACCAGCTTCGGGAATATACGCGAAAATTTCCTTCCGCTACGATTTAGACACGTGGACGGTGGATAGATTCCTTCTCTCCATCCCCGTCTCTATATATGGGACTCATCATTTCTTCCTTCAAACTCGTTCAATAGCGATAAGTTTATACATTGATTTACCAAAACAAACTCTCAATCTCTTCGTTGTTCATCGTCGAAAATGTCGTGCTGTGGTGGAAATTGTGGATGCGGCTCTGGCTGCAAGTGCGGAAGTGGCTGTGGAGGGTGAGTAATCGCTAATTTTCTCCTTTGAATTTGATCGCGTGAAATTGCTTTTTGTTAATTTGATTCTGTGGAAAATGATCTCTCGAGAATCTGATCTTCCGTTTTCTTGTATGTTGGTTTCGATTTCTTAATCTTCTCTGCATCTCCGTTCCTCGCTCGATGGCGATCTGATCACTCGCCGATCATCTTCATTGAGTTCTGGAGATCACAAAGATCGCGCGATCAAGAAGGATTCTCTTCTGAAATTTCTGAAAATGACTCTGATATTCATTTTCCAGAGAATAATCGCGATGATTTTGACGTTTTGATCTTTTGTTATGCAGATGCAAGATGTTCCCTGACATGAGCTTTTCAGAGGCCACCGCTACCATCGAGACCTTCGTAGTCGGTTTCGCTCCTCACAAGATGTAAGTCTCTGCAATTACGCCTAATTTTTCAAGAAATGTTTAGGTATTTAATCATGATATTATTTAACGGTGTCGGCTTGTTCGATATCAGGTCCTTCAAGGTAGCAGAGATGGGAGCTGAGAATGGCTGCAAGTGCGGTGACAACTGCACCTGCGATCCATGCAACTGTAAATGAGCAGCAGCTGCTCAAATCTTCTCAAGTGGAGATTCTGTTTGAGTACTAATAGTATGCATCCTTCTTAATAACAATTATCAAATCTCCAAGCGTTTGCGTTCTGTCGTTGCGTCTCTAAGAGTCGATTGTAGCGTTCCTTTTGAATAATAGCAGTCATGGAGTTGTGGAAAAACTTATATGATCTGTTGTTATGCTTCAGTCGGTGATCTTCTTAGTTTAAGATCTCTTTGTTTATCCATGTCTATTTAGTGTTTGCTTCTCTTTAAGAAATTAAAAATGGTACGTGCTAATTTAAGGAGAG

mRNA sequence

GGACCCCACAAAAGACCCATACAACTGAAAATCATACGAGTGATTAACACGAGAGATACGTGGAAGAGAACAGCACCAGCTTCGGGAATATACGCGAAAATTTCCTTCCGCTACGATTTAGACACGTGGACGGTGGATAGATTCCTTCTCTCCATCCCCGTCTCTATATATGGGACTCATCATTTCTTCCTTCAAACTCGTTCAATAGCGATAAGTTTATACATTGATTTACCAAAACAAACTCTCAATCTCTTCGTTGTTCATCGTCGAAAATGTCGTGCTGTGGTGGAAATTGTGGATGCGGCTCTGGCTGCAAGTGCGGAAGTGGCTGTGGAGGAGGCCACCGCTACCATCGAGACCTTCGTAGTCGGTTTCGCTCCTCACAAGATGTCCTTCAAGGTAGCAGAGATGGGAGCTGAGAATGGCTGCAAGTGCGGTGACAACTGCACCTGCGATCCATGCAACTGTAAATGAGCAGCAGCTGCTCAAATCTTCTCAAGTGGAGATTCTGTTTGAGTACTAATAGTATGCATCCTTCTTAATAACAATTATCAAATCTCCAAGCGTTTGCGTTCTGTCGTTGCGTCTCTAAGAGTCGATTGTAGCGTTCCTTTTGAATAATAGCAGTCATGGAGTTGTGGAAAAACTTATATGATCTGTTGTTATGCTTCAGTCGGTGATCTTCTTAGTTTAAGATCTCTTTGTTTATCCATGTCTATTTAGTGTTTGCTTCTCTTTAAGAAATTAAAAATGGTACGTGCTAATTTAAGGAGAG

Coding sequence (CDS)

GGACCCCACAAAAGACCCATACAACTGAAAATCATACGAGTGATTAACACGAGAGATACGTGGAAGAGAACAGCACCAGCTTCGGGAATATACGCGAAAATTTCCTTCCGCTACGATTTAGACACGTGGACGGTGGATAGATTCCTTCTCTCCATCCCCGTCTCTATATATGGGACTCATCATTTCTTCCTTCAAACTCGTTCAATAGCGATAAGTTTATACATTGATTTACCAAAACAAACTCTCAATCTCTTCGTTGTTCATCGTCGAAAATGTCGTGCTGTGGTGGAAATTGTGGATGCGGCTCTGGCTGCAAGTGCGGAAGTGGCTGTGGAGGAGGCCACCGCTACCATCGAGACCTTCGTAGTCGGTTTCGCTCCTCACAAGATGTCCTTCAAGGTAGCAGAGATGGGAGCTGAGAATGGCTGCAAGTGCGGTGACAACTGCACCTGCGATCCATGCAACTGTAAATGA

Protein sequence

GPHKRPIQLKIIRVINTRDTWKRTAPASGIYAKISFRYDLDTWTVDRFLLSIPVSIYGTHHFFLQTRSIAISLYIDLPKQTLNLFVVHRRKCRAVVEIVDAALAASAEVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK

Homology

[Close]

BLAST of CcUC10G206450 vs. NCBI nr
Match: BAD26571.1 (type-2 metallothionein [Citrullus lanatus])

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-17
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  EATATIETFVVGFAPHKMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 28  DMSFSEATATIETFVVGFAPHKMSFEVAEMGAENGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CcUC10G206450 vs. NCBI nr
Match: WP_197429621.1 (hypothetical protein, partial [Myroides odoratus])

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-17
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  EATATIETFVVGFAPHKMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 35  DMSFSEATATIETFVVGFAPHKMSFEVAEMGAENGCKCGDNCTCDPCNCK 84

[Close]

BLAST of CcUC10G206450 vs. NCBI nr
Match: XP_038906044.1 (metallothionein-like protein type 2 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 7.4e-16
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  E TATIETFVVGFAP KMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 28  DMSFSETTATIETFVVGFAPQKMSFEVAEMGAENGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CcUC10G206450 vs. NCBI nr
Match: KAG6596409.1 (Metallothionein-like protein type 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027952.1 Metallothionein-like protein type 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-15
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +V+  E TATIETFVVG AP KMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 28  DVSFSETTATIETFVVGLAPQKMSFEVAEMGAENGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CcUC10G206450 vs. NCBI nr
Match: XP_022949247.1 (metallothionein-like protein type 2 [Cucurbita moschata] >XP_022971579.1 metallothionein-like protein type 2 [Cucurbita maxima] >XP_023538679.1 metallothionein-like protein type 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  E TATIETFVVG AP KMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 28  DMSFSETTATIETFVVGLAPQKMSFEVAEMGAENGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CcUC10G206450 vs. ExPASy Swiss-Prot
Match: O24058 (Metallothionein-like protein type 2 OS=Malus domestica OX=3750 GN=MT1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-10
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 116 ATIETFVVGFAPHKMSFKVAEMG--AENGCKCGDNCTCDPCNCK 158
           +T ET V+G AP K   + +EMG  AENGCKCGDNCTC+PCNCK
Sbjct: 36  STTETLVMGVAPQKSHMEASEMGVAAENGCKCGDNCTCNPCNCK 79

[Close]

BLAST of CcUC10G206450 vs. ExPASy Swiss-Prot
Match: O22319 (Metallothionein-like protein type 2 OS=Musa acuminata OX=4641 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 112 EEATATIETFVVGFAPHKMSFKVAE--MGAENGCKCGDNCTCDPCNCK 158
           EE ++T +T ++G AP K  F+  E   G++NGCKCG NCTCDPCNCK
Sbjct: 31  EERSSTSQTMIMGVAPQKGHFEELETAAGSDNGCKCGSNCTCDPCNCK 78

[Close]

BLAST of CcUC10G206450 vs. ExPASy Swiss-Prot
Match: P20830 (Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.0e-09
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 117 TIETFVVGFAPHKMSFKVAEMGA---ENGCKCGDNCTCDPCNCK 158
           T ET ++G  P K+ F+ AEM A   + GCKCGDNCTCDPCNCK
Sbjct: 32  TTETVILGVGPAKIQFEGAEMSAASEDGGCKCGDNCTCDPCNCK 75

[Close]

BLAST of CcUC10G206450 vs. ExPASy Swiss-Prot
Match: Q41670 (Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 117 TIETFVVGFAPHKMSFKVAEM---GAENGCKCGDNCTCDPCNCK 158
           T ET ++G  P K+ F+ AEM     E GCKCGDNCTCDPCNCK
Sbjct: 32  TKETVILGVGPAKIQFEGAEMSFASKEGGCKCGDNCTCDPCNCK 75

[Close]

BLAST of CcUC10G206450 vs. ExPASy Swiss-Prot
Match: P43390 (Metallothionein-like protein type 2 OS=Actinidia deliciosa OX=3627 GN=pKIWI504 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-08
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMG--AENGCKCGDNCTCDPCNCK 158
           +++  E T T ET +VG AP K  F+ +EMG  AENGCKCG +C CDPC CK
Sbjct: 28  DLSYSEMTTT-ETLIVGVAPQKTYFEGSEMGVAAENGCKCGSDCKCDPCTCK 78

[Close]

BLAST of CcUC10G206450 vs. ExPASy TrEMBL
Match: Q6I674 (Type-2 metallothionein OS=Citrullus lanatus OX=3654 GN=CLMT2 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  EATATIETFVVGFAPHKMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 28  DMSFSEATATIETFVVGFAPHKMSFEVAEMGAENGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CcUC10G206450 vs. ExPASy TrEMBL
Match: A0A6J1I8Z4 (metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  E TATIETFVVG AP KMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 28  DMSFSETTATIETFVVGLAPQKMSFEVAEMGAENGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CcUC10G206450 vs. ExPASy TrEMBL
Match: A0A6J1GBI9 (metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC111452655 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  E TATIETFVVG AP KMSF+VAEMGAENGCKCGDNCTCDPCNCK
Sbjct: 28  DMSFSETTATIETFVVGLAPQKMSFEVAEMGAENGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CcUC10G206450 vs. ExPASy TrEMBL
Match: A0A1S3B6L7 (metallothionein-like protein type 2 OS=Cucumis melo OX=3656 GN=LOC103486389 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  E TATIETFVVGFAP KMS++VAEMGAENGCKCGDNCTCDPC CK
Sbjct: 28  DLSFSETTATIETFVVGFAPQKMSYEVAEMGAENGCKCGDNCTCDPCTCK 77

[Close]

BLAST of CcUC10G206450 vs. ExPASy TrEMBL
Match: A0A0A0LAK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734260 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 108 EVAVEEATATIETFVVGFAPHKMSFKVAEMGAENGCKCGDNCTCDPCNCK 158
           +++  E +ATIETFVVGFAP KMS++VAEMGAENGCKCGDNCTCDPC CK
Sbjct: 28  DLSFSETSATIETFVVGFAPQKMSYEVAEMGAENGCKCGDNCTCDPCTCK 77

[Close]

BLAST of CcUC10G206450 vs. TAIR 10
Match: AT3G09390.1 (metallothionein 2A )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 23/47 (48.94%), Postives = 27/47 (57.45%), Query Frame = 0


Query: 115 TATIETFVVGFAP---HKMSFKVAEMGAEN-GCKCGDNCTCDPCNCK 158
           T T ETFV+G AP   ++         AEN  CKCG +C CDPC CK
Sbjct: 35  TTTTETFVLGVAPAMKNQYEASGESNNAENDACKCGSDCKCDPCTCK 81

The following BLAST results are available for this feature:

BLAST of CcUC10G206450 vs. NCBI nr


Match Name	E-value	Identity	Description
BAD26571.1	3.0e-17	88.00	type-2 metallothionein [Citrullus lanatus]	[more]
WP_197429621.1	3.0e-17	88.00	hypothetical protein, partial [Myroides odoratus]	[more]
XP_038906044.1	7.4e-16	84.00	metallothionein-like protein type 2 [Benincasa hispida]	[more]
KAG6596409.1	1.6e-15	84.00	Metallothionein-like protein type 2, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022949247.1	3.6e-15	82.00	metallothionein-like protein type 2 [Cucurbita moschata] >XP_022971579.1 metallo...	[more]

BLAST of CcUC10G206450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24058	6.3e-10	65.91	Metallothionein-like protein type 2 OS=Malus domestica OX=3750 GN=MT1 PE=3 SV=1	[more]
O22319	6.9e-09	56.25	Metallothionein-like protein type 2 OS=Musa acuminata OX=4641 PE=3 SV=2	[more]
P20830	9.0e-09	61.36	Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1	[more]
Q41670	2.6e-08	61.36	Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1	[more]
P43390	5.9e-08	55.77	Metallothionein-like protein type 2 OS=Actinidia deliciosa OX=3627 GN=pKIWI504 P...	[more]

BLAST of CcUC10G206450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q6I674	1.4e-17	88.00	Type-2 metallothionein OS=Citrullus lanatus OX=3654 GN=CLMT2 PE=2 SV=1	[more]
A0A6J1I8Z4	1.8e-15	82.00	metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 ...	[more]
A0A6J1GBI9	1.8e-15	82.00	metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC11145265...	[more]
A0A1S3B6L7	3.9e-15	80.00	metallothionein-like protein type 2 OS=Cucumis melo OX=3656 GN=LOC103486389 PE=3...	[more]
A0A0A0LAK4	1.1e-14	78.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734260 PE=3 SV=1	[more]

BLAST of CcUC10G206450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09390.1	1.1e-04	48.94	metallothionein 2A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000347	Metallothionein, family 15, plant	PFAM	PF01439	Metallothio_2	coord: 107..156 e-value: 9.8E-11 score: 42.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G206450.1	CcUC10G206450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding