CcUC10G206380 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206380
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RING-type E3 ubiquitin transferase
Location	CicolChr10: 33419305 .. 33419856 (+)
RNA-Seq Expression	CcUC10G206380
Synteny	CcUC10G206380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCACAGCGCCTCCCTGATGAATCCATCGACGCCGCCACACCCGGCGCCACATCGGACCGTTGATTTCTCTCCGTTCGAGTTCATTCTTGGCCTCGTCGCCGTCATCACAATCCCTGCCCTAGTCTACTCCTTCTTCGCCATCAAGTGCCCACCCAATCTCCTCCGCCTCTGGCGGCAGAGATCCTCCAGGCTCTCCGGCCCCGCCGTCACCGTGGTGGTCGGAAATCGTACTTCTTCTAGTGACGTGGCTGCAGCCGTTCAGTACAACAAGGACGAGCACTGTAAGGAAGTCGGCAACGAGTGTCCGGTGTGCCTGTCGGCGTTCGACGACGGAGAGGAGATCCGGCAACTCGCCGCCTGTAAACACTCCTTTCACGTGGAGTGTATCGATATGTGGCTTTATTCTCATCCTAATTGTCCTGTTTGCCGAGCCGCCGTCCCCGTCACTGTTAAACGGCCGACTAACAACCGCGCGCCGCGGCGGCCGGTGGCTTCCAGAAGCGACGATTTCCATCAAGGACTGCCGGATGCCGGAAATTTAGTTTGA

mRNA sequence

ATGGACCACAGCGCCTCCCTGATGAATCCATCGACGCCGCCACACCCGGCGCCACATCGGACCGTTGATTTCTCTCCGTTCGAGTTCATTCTTGGCCTCGTCGCCGTCATCACAATCCCTGCCCTAGTCTACTCCTTCTTCGCCATCAAGTGCCCACCCAATCTCCTCCGCCTCTGGCGGCAGAGATCCTCCAGGCTCTCCGGCCCCGCCGTCACCGTGGTGGTCGGAAATCGTACTTCTTCTAGTGACGTGGCTGCAGCCGTTCAGTACAACAAGGACGAGCACTGTAAGGAAGTCGGCAACGAGTGTCCGGTGTGCCTGTCGGCGTTCGACGACGGAGAGGAGATCCGGCAACTCGCCGCCTGTAAACACTCCTTTCACGTGGAGTGTATCGATATGTGGCTTTATTCTCATCCTAATTGTCCTGTTTGCCGAGCCGCCGTCCCCGTCACTGTTAAACGGCCGACTAACAACCGCGCGCCGCGGCGGCCGGTGGCTTCCAGAAGCGACGATTTCCATCAAGGACTGCCGGATGCCGGAAATTTAGTTTGA

Coding sequence (CDS)

ATGGACCACAGCGCCTCCCTGATGAATCCATCGACGCCGCCACACCCGGCGCCACATCGGACCGTTGATTTCTCTCCGTTCGAGTTCATTCTTGGCCTCGTCGCCGTCATCACAATCCCTGCCCTAGTCTACTCCTTCTTCGCCATCAAGTGCCCACCCAATCTCCTCCGCCTCTGGCGGCAGAGATCCTCCAGGCTCTCCGGCCCCGCCGTCACCGTGGTGGTCGGAAATCGTACTTCTTCTAGTGACGTGGCTGCAGCCGTTCAGTACAACAAGGACGAGCACTGTAAGGAAGTCGGCAACGAGTGTCCGGTGTGCCTGTCGGCGTTCGACGACGGAGAGGAGATCCGGCAACTCGCCGCCTGTAAACACTCCTTTCACGTGGAGTGTATCGATATGTGGCTTTATTCTCATCCTAATTGTCCTGTTTGCCGAGCCGCCGTCCCCGTCACTGTTAAACGGCCGACTAACAACCGCGCGCCGCGGCGGCCGGTGGCTTCCAGAAGCGACGATTTCCATCAAGGACTGCCGGATGCCGGAAATTTAGTTTGA

Protein sequence

MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSFFAIKCPPNLLRLWRQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDAGNLV

Homology

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BLAST of CcUC10G206380 vs. NCBI nr
Match: KAE8651013.1 (hypothetical protein Csa_001104 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 161/184 (87.50%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSF-FAIKCPPNLLRLW 60
           MD +AS MN S PP+P PHRTVDFSP EFILGLVAVITIPALVYSF FAIKCPPN LRLW
Sbjct: 42  MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 101

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           RQRS+RLSG   TVVVGNRT SSDVAAAV+YNKDEHCKEVGNECPVCLSAFDDGEEIRQL
Sbjct: 102 RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 161

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
           A CKHSFHV+CIDMWLYSHPNCPVCRAAVPVTVKRP +N APRRP ASRSDDFHQGLPDA
Sbjct: 162 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 221

Query: 181 GNLV 184
           G LV
Sbjct: 222 GYLV 225

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BLAST of CcUC10G206380 vs. NCBI nr
Match: XP_004137943.1 (RING-H2 finger protein ATL33 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 161/184 (87.50%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSF-FAIKCPPNLLRLW 60
           MD +AS MN S PP+P PHRTVDFSP EFILGLVAVITIPALVYSF FAIKCPPN LRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           RQRS+RLSG   TVVVGNRT SSDVAAAV+YNKDEHCKEVGNECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
           A CKHSFHV+CIDMWLYSHPNCPVCRAAVPVTVKRP +N APRRP ASRSDDFHQGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of CcUC10G206380 vs. NCBI nr
Match: XP_038905078.1 (RING-H2 finger protein ATL33 [Benincasa hispida])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 162/184 (88.04%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYS-FFAIKCPPNLLRLW 60
           MD SASLMN S PP P PHRTVDFSP EFILGLVAVITIPALVYS FFAIKCPPNLLRLW
Sbjct: 1   MDKSASLMNRSPPPSPTPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           R RS+RLSG AVTVVV NRT SSDVAAAV+YNKDEHCKEV NECPVCLSAFDDGEEIRQL
Sbjct: 61  RHRSARLSGAAVTVVVRNRTPSSDVAAAVKYNKDEHCKEVSNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
           AACKHSFHV+CIDMWLYSHPNCPVCRAAVPV VKRP NN APRRP  SRSDDF QGLPDA
Sbjct: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVPVAVKRPINNHAPRRPAVSRSDDFQQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

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BLAST of CcUC10G206380 vs. NCBI nr
Match: XP_008442561.1 (PREDICTED: RING-H2 finger protein ATL33 [Cucumis melo] >KAA0044082.1 RING-H2 finger protein ATL33 [Cucumis melo var. makuwa] >TYK25055.1 RING-H2 finger protein ATL33 [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 6.0e-86
Identity = 158/184 (85.87%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSF-FAIKCPPNLLRLW 60
           MD +AS MN S PP+P PHRTVDFSP EFILGLVAVITIPAL YSF FAIKCPPN LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           RQRS+RLS   VT+VVGNRT SSDVAAAV+YNKDEHCKEVG ECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
             CKHSFHV+CIDMWLYSHPNCPVCRAAVPVTVKRP NN APRRP ASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

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BLAST of CcUC10G206380 vs. NCBI nr
Match: XP_022934546.1 (RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017306.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.5 bits (794), Expect = 9.9e-81
Identity = 150/184 (81.52%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYS-FFAIKCPPNLLRLW 60
           MD SA+LMN STPPHP PHRT DFSP EFILGL+AVI IPALVYS FFAIKCPP LLRLW
Sbjct: 4   MDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           R+RS+RLSG  VTVV GNR+S SDVA   +YNKDE  KEVGNECPVCLSAF DGEEIRQL
Sbjct: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
            ACKHSFHV+CIDMW YSHPNCPVCRA + + VKRP NNRAPRRP ASRSDDFHQGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GNLV 184
           GNLV
Sbjct: 184 GNLV 187

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BLAST of CcUC10G206380 vs. ExPASy Swiss-Prot
Match: O80927 (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 79/188 (42.02%), Postives = 107/188 (56.91%), Query Frame = 0


Query: 13  PPHPAPHRTVDFSPFEFILGLVAVITIPALVYS-FFAIKCPPNLLRLWRQRSSRLSG--P 72
           PP PAP R++D +P + I  ++A + +PALVY+ FF   C  +       R+S  S   P
Sbjct: 48  PPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSDDTP 107

Query: 73  AVTVVVGNRTSSSDVA-AAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQLAACKHSFHV 132
             TV     T ++  + +  +++KD H KE+GNEC VCL  F D +E+RQL+ CKH+FHV
Sbjct: 108 HATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAFHV 167

Query: 133 ECIDMWLYSHPNCPVCRA-----------AVPVTVKRPTNNRAPRRPVA--SRSDDFHQG 184
            CI+ WL  HPNCP+CR             VPV V    N     R V+  SR DD+ QG
Sbjct: 168 LCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWRQG 227

[Close]

BLAST of CcUC10G206380 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 75  VGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMW 134
           VG   S+ +    V + K E   + G EC VCL+ F++ E +R L  C H+FH+ CID W
Sbjct: 108 VGLHRSAINSITVVGFKKGEGIID-GTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTW 167

Query: 135 LYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
           L SH NCP+CRA V +  + P           S S +  +G  D+
Sbjct: 168 LLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSNDLRGRQDS 211

[Close]

BLAST of CcUC10G206380 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 100 GNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNR 159
           G +C +CL  F++ E +R L  C H+FHV CID WL SH NCP+CRA + V    PT  +
Sbjct: 152 GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV----PTTQQ 211

Query: 160 APRRPVASRSDDFHQGLPDA-GNLV 184
                V    D F   +  A GN+V
Sbjct: 212 PEHHVVVMNLDRFTSNVGSAEGNVV 232

[Close]

BLAST of CcUC10G206380 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-13
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 100 GNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNR 159
           G++C VCLS F++ E +R L  C H+FH+ CID WL SH NCP+CRA V   V  PT + 
Sbjct: 139 GSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFV-TGVNNPTASV 198

Query: 160 APRRP--VASRSDDFHQ 175
                  VA++S+  HQ
Sbjct: 199 GQNVSVVVANQSNSAHQ 214

[Close]

BLAST of CcUC10G206380 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 61/190 (32.11%), Postives = 79/190 (41.58%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSFFAIKC--------- 60
           MD S+S  +PS    PA    +       +  +  +I   AL  +F  ++C         
Sbjct: 12  MDESSSSSSPSPVSAPAGQAAMTAGGIATVAAV--LIVFAALTLAFVLLQCYCDERRRAV 71

Query: 61  --PPNLLRLWRQRSSRLSG------------PAVTVVVGNRTSSSDVAAAVQYNKDEHCK 120
                  R  R R  R SG            P V   +     S   AAA    ++E   
Sbjct: 72  TTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEE-D 131

Query: 121 EVGNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTN 168
           + G EC VCL+  +DGEE R L  C H FH EC+DMWL SH  CP+CR  + V V  P  
Sbjct: 132 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR--LTVVVPPPPL 191

[Close]

BLAST of CcUC10G206380 vs. ExPASy TrEMBL
Match: A0A0A0LA67 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.9e-88
Identity = 161/184 (87.50%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSF-FAIKCPPNLLRLW 60
           MD +AS MN S PP+P PHRTVDFSP EFILGLVAVITIPALVYSF FAIKCPPN LRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           RQRS+RLSG   TVVVGNRT SSDVAAAV+YNKDEHCKEVGNECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
           A CKHSFHV+CIDMWLYSHPNCPVCRAAVPVTVKRP +N APRRP ASRSDDFHQGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of CcUC10G206380 vs. ExPASy TrEMBL
Match: A0A5D3DN65 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001760 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 158/184 (85.87%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSF-FAIKCPPNLLRLW 60
           MD +AS MN S PP+P PHRTVDFSP EFILGLVAVITIPAL YSF FAIKCPPN LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           RQRS+RLS   VT+VVGNRT SSDVAAAV+YNKDEHCKEVG ECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
             CKHSFHV+CIDMWLYSHPNCPVCRAAVPVTVKRP NN APRRP ASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of CcUC10G206380 vs. ExPASy TrEMBL
Match: A0A1S3B6Q9 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 158/184 (85.87%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYSF-FAIKCPPNLLRLW 60
           MD +AS MN S PP+P PHRTVDFSP EFILGLVAVITIPAL YSF FAIKCPPN LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           RQRS+RLS   VT+VVGNRT SSDVAAAV+YNKDEHCKEVG ECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
             CKHSFHV+CIDMWLYSHPNCPVCRAAVPVTVKRP NN APRRP ASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of CcUC10G206380 vs. ExPASy TrEMBL
Match: A0A6J1F238 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.8e-81
Identity = 150/184 (81.52%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYS-FFAIKCPPNLLRLW 60
           MD SA+LMN STPPHP PHRT DFSP EFILGL+AVI IPALVYS FFAIKCPP LLRLW
Sbjct: 4   MDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           R+RS+RLSG  VTVV GNR+S SDVA   +YNKDE  KEVGNECPVCLSAF DGEEIRQL
Sbjct: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
            ACKHSFHV+CIDMW YSHPNCPVCRA + + VKRP NNRAPRRP ASRSDDFHQGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GNLV 184
           GNLV
Sbjct: 184 GNLV 187

[Close]

BLAST of CcUC10G206380 vs. ExPASy TrEMBL
Match: A0A6J1J6T6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111481888 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 151/184 (82.07%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MDHSASLMNPSTPPHPAPHRTVDFSPFEFILGLVAVITIPALVYS-FFAIKCPPNLLRLW 60
           MD SA+LMN STPPHP  HRT DFSPFEFILGLVAVI IPALVYS FFAIKCPP LLRLW
Sbjct: 4   MDSSAALMNRSTPPHPMTHRTNDFSPFEFILGLVAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RQRSSRLSGPAVTVVVGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120
           R+RS+RLSG  V VV GNR+S SDVAA  +YNKDE  KEVGNECPVCLSAF DGEEIRQL
Sbjct: 64  RRRSARLSGAPVAVVAGNRSSYSDVAATFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 AACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
            ACKHSFHV+CIDMW YSHPNCPVCRA + + VKRP NNRAPRRP ASRSDDFHQGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIVIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GNLV 184
           GNLV
Sbjct: 184 GNLV 187

[Close]

BLAST of CcUC10G206380 vs. TAIR 10
Match: AT2G37580.1 (RING/U-box superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-33
Identity = 79/188 (42.02%), Postives = 107/188 (56.91%), Query Frame = 0


Query: 13  PPHPAPHRTVDFSPFEFILGLVAVITIPALVYS-FFAIKCPPNLLRLWRQRSSRLSG--P 72
           PP PAP R++D +P + I  ++A + +PALVY+ FF   C  +       R+S  S   P
Sbjct: 48  PPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSDDTP 107

Query: 73  AVTVVVGNRTSSSDVA-AAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQLAACKHSFHV 132
             TV     T ++  + +  +++KD H KE+GNEC VCL  F D +E+RQL+ CKH+FHV
Sbjct: 108 HATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAFHV 167

Query: 133 ECIDMWLYSHPNCPVCRA-----------AVPVTVKRPTNNRAPRRPVA--SRSDDFHQG 184
            CI+ WL  HPNCP+CR             VPV V    N     R V+  SR DD+ QG
Sbjct: 168 LCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWRQG 227

[Close]

BLAST of CcUC10G206380 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 40/104 (38.46%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 57  RLWRQRSSR---LSGPAVTVV---------VGNRTSSSDVAAAVQYNKDEHCKEVGNECP 116
           R W    +R     GPA  +V         +G   +        QY+K +   E G +C 
Sbjct: 160 RRWSMEEARNWDFDGPAPVIVDHPIWHIRTIGLNPTVISSIKVCQYSKKDGVVE-GTDCS 219

Query: 117 VCLSAFDDGEEIRQLAACKHSFHVECIDMWLYSHPNCPVCRAAV 149
           VCLS F++ E +R L  CKH+FH+ CID WL SH NCP+CRA +
Sbjct: 220 VCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262

[Close]

BLAST of CcUC10G206380 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 75  VGNRTSSSDVAAAVQYNKDEHCKEVGNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMW 134
           VG   S+ +    V + K E   + G EC VCL+ F++ E +R L  C H+FH+ CID W
Sbjct: 108 VGLHRSAINSITVVGFKKGEGIID-GTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTW 167

Query: 135 LYSHPNCPVCRAAVPVTVKRPTNNRAPRRPVASRSDDFHQGLPDA 180
           L SH NCP+CRA V +  + P           S S +  +G  D+
Sbjct: 168 LLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSNDLRGRQDS 211

[Close]

BLAST of CcUC10G206380 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-14
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 100 GNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNR 159
           G +C +CL  F++ E +R L  C H+FHV CID WL SH NCP+CRA + V    PT  +
Sbjct: 152 GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV----PTTQQ 211

Query: 160 APRRPVASRSDDFHQGLPDA-GNLV 184
                V    D F   +  A GN+V
Sbjct: 212 PEHHVVVMNLDRFTSNVGSAEGNVV 232

[Close]

BLAST of CcUC10G206380 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-14
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 100 GNECPVCLSAFDDGEEIRQLAACKHSFHVECIDMWLYSHPNCPVCRAAVPVTVKRPTNNR 159
           G++C VCLS F++ E +R L  C H+FH+ CID WL SH NCP+CRA V   V  PT + 
Sbjct: 139 GSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFV-TGVNNPTASV 198

Query: 160 APRRP--VASRSDDFHQ 175
                  VA++S+  HQ
Sbjct: 199 GQNVSVVVANQSNSAHQ 214

The following BLAST results are available for this feature:

BLAST of CcUC10G206380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651013.1	1.4e-87	87.50	hypothetical protein Csa_001104 [Cucumis sativus]	[more]
XP_004137943.1	1.4e-87	87.50	RING-H2 finger protein ATL33 [Cucumis sativus]	[more]
XP_038905078.1	1.2e-86	88.04	RING-H2 finger protein ATL33 [Benincasa hispida]	[more]
XP_008442561.1	6.0e-86	85.87	PREDICTED: RING-H2 finger protein ATL33 [Cucumis melo] >KAA0044082.1 RING-H2 fin...	[more]
XP_022934546.1	9.9e-81	81.52	RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 fin...	[more]

BLAST of CcUC10G206380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80927	2.3e-32	42.02	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2	[more]
Q9LX93	3.2e-13	37.14	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
P0C041	7.1e-13	42.35	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q9LF64	9.2e-13	46.75	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LRB7	1.2e-12	32.11	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]

BLAST of CcUC10G206380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA67	6.9e-88	87.50	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE...	[more]
A0A5D3DN65	2.9e-86	85.87	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B6Q9	2.9e-86	85.87	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 ...	[more]
A0A6J1F238	4.8e-81	81.52	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690...	[more]
A0A6J1J6T6	1.1e-80	82.07	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111481888 P...	[more]

BLAST of CcUC10G206380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37580.1	1.7e-33	42.02	RING/U-box superfamily protein	[more]
AT4G33565.1	2.3e-14	38.46	RING/U-box superfamily protein	[more]
AT5G10380.1	2.3e-14	37.14	RING/U-box superfamily protein	[more]
AT4G17905.1	5.0e-14	42.35	RING/U-box superfamily protein	[more]
AT5G17600.1	6.5e-14	46.75	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 103..144 e-value: 5.4E-6 score: 35.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..145 e-value: 3.0E-14 score: 53.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 103..145 score: 12.386007
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 74..151 e-value: 2.2E-20 score: 74.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..183
None	No IPR available	PANTHER	PTHR45676:SF88	RING-H2 FINGER PROTEIN ATL33	coord: 9..183
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 102..145 e-value: 2.08899E-16 score: 67.3351
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 102..152
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 9..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G206380.1	CcUC10G206380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane