CcUC10G206300 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206300
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 33358519 .. 33361140 (-)
RNA-Seq Expression	CcUC10G206300
Synteny	CcUC10G206300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCCGTACTTTAATTCACCAAATTTAGACATGTATTGAATTATGTAAAAATATTTTTTAACTTTGAGACAAGCATCTGTTGTACTTTTTATACGTTGAAAAATTCAAATTTATTTAAGAAAAGAATATGCATCGAACAACTAATTAAAATAAAAGAAAAACTAATGTGACAAACTAGTAAAATTGAAAGACATAGTATATCCATTACACTGTTCCGTAAACTAACATAATAACCAATGTGTACAAAAAAAAAAATTATTATGTAAGTGATTTTTAAAATAGTCCTTATGCATTAAATAAATGTCAACTACGATTTTAATTTTTCATACATTTATAAATAAATACAAAACGTATGCATCCTAATTTTTACACATTAATTGTTCGAGTATTTTTATTCATTTATTTTGTGATCAATATATCTTTTTAGAATATTTTTAAAGTTCAATCATATTTTTTTCGATTAAGAATTGTTTTGAAACCTTTTAAAGTTCAACTGCCTAATTAAATTATAAACTTGACACAAAATTCAAGGATGTCTTGTGCAATTGTGCTAATGGTTGACTTTCATTGTTTCAATGTAATTAGTACATATAGTATGATTTGTTATTAAATAATTAAATGAAAATTAGTACACGTAGTGTAATTTGTAATTGAATAGTCAAATGGTATGATTGTGATTTGTAAATCACTTTTTTCTAGTTCTGTTTATGATATAGCACATGATAGCTACTAAAACCAAAGGATAATGAGAAACAAAATAGATTCACAACTATTAAGACGTTTTATACGACTTCAAACAAAATTTTGTTTAAGGTGTGTTATATTTTGTTTCAACGAGTTATTATAGTCAATATTAACATAGTTTAAAAGACATAAAATTTGTATCATCAACCTCGAAATCAGTAATTCGATTCTCCATCTCATACGTTATCTAAAAAAATGTGTTTTAAAAGAAAATGAAGACAGTATATTGTTAATCATAGATTAAGTAATTGAATTTTGACCATTGCAAAAATGGAAATGAAAAGTTTTAAGACGTACTTTTAAATGAGTCTAAATTAAAGGATAATTTTTAATTTACTCTTAAACACGTTAAACATGTTAAGTTGCATGAATTTTCACAACCTTTAATTTCATCAGATCTAACCGTAGATCTAATTAAACGTTACATTTTTACATTATGCAGTTTCCAGGTAATTTATCATTAATTCTTTTTAAGAAAAGATATTTGTAAACCTACTAGTTTCAACAATAGTAGCTTAGAGACAAATTTAAGGTCGAGTAAAGTACAAATTAGCCATATTATAACTTTATGAAATCTCACAATTGTTTAGAAAACTTCGCCATGATGTTGATTTTCTTTGAAATCAAAACAAATTTTATACAATAAAAACGATACAATTGGATAGGTTTATATAAAAAGAATAAATTAGTTTCCTTTTAGACAAGATAAAGTGCGCATTAGTTTAAATGCTAAAGATTTGTGTATGTCAAAAATATCCCAATATAGTATAGCTTAATTGTGATTCAAATCCATAGTTGTTTTCATCTTTGTCCCCTCAGTCCAAACGAGAAACAAGTAAAAGATAATCTTAAATTTTTGTCGACATTTCGATATTTTCACGTTTTCATGGGTTTTATATCAACATAAGGGGTTAATTGATATTTTAATTAAAAATTATATAAAACATAAAAAGAATAATAAACAATAAATTTATTAATTTAATTTTATTTTTTGATTTTTTTTTATTTCTATCATTTTTTCAAAAATATTTATCGATATTTATATTTTTCGGTCGACATTTTTTAGATTAAGGAGATAATTATTTTAAATGACAAAATTATTAAAAATATTAACAAATAATAGCAAAATACCACAATCTATCGGCAATAGATCGTGATAAATTACCTATCACGACACAGATAACAGTTTGCAATCCATTGCAGATTTCACATATAAATACTATATTTATAAATATTTTAGTTTATTTTGTCAGTATTTAAAAATAACCCAAATCAAAATATCAATGTTTTCGTTGATACGAACGTTTTAAATGTGAGTAAAACACAACAGGCACGAGCAGCATCGATCCTGGCTCACAAAACACCAAATGCAAAGACCACACTTTCTTCGGGTCAACATAGAAAAATACCATAAATAAAAAGAAATAGAAAACGGAGAATATTTTTTTTTCCTTGATTCAAAAGAAAAAGTGAGATTTAACAGCAAATTTCCCAAAAAAAAAAAAAAAAAAAACAGAAAACGAAACGAAACGACAGATCGAAAAACGAAAACCTACTTCCACTTGATCTTCATATTGCAAGGGAACAAACGACGTCGTTGAGTCCTTGGTCCGCTAGCTCGCCAGATTCGGAGCTTCATTCGACGCCGCTGGAGCAGGAGGCCTTGCCGCCGTCGCGGCCGCCGGATCAGCGCTGCGACTCTGCTGTGGTGGCCGATTAAGGAGAGTCGAGTGCGCACCGCCAGATTCGACCGTGGATCCCGGTCCGGCCGGCGGCGGCGGTTCGGAAAGGTAATCGGTGGCCATGAAAACGCCCTGCGAAGGCCTCCTCTGGTGCCTGCCCGGTCGCTGCGACATTTTGCGGCGGAGATTTGA

mRNA sequence

ATGGTATCCAAAACGAAACGAAACGACAGATCGAAAAACGAAAACCTACTTCCACTTGATCTTCATATTGCAAGGGAACAAACGACGTCGTTGAGTCCTTGGTCCGCTAGCTCGCCAGATTCGGAGCTTCATTCGACGCCGCTGGAGCAGGAGGCCTTGCCGCCGTCGCGGCCGCCGGATCAGCGCTGCGACTCTGCTGTGGAGAGTCGAGTGCGCACCGCCAGATTCGACCGTGGATCCCGGTCCGGCCGGCGGCGGCGGTTCGGAAAGGTAATCGGTGGCCATGAAAACGCCCTGCGAAGGCCTCCTCTGGTGCCTGCCCGGTCGCTGCGACATTTTGCGGCGGAGATTTGA

Coding sequence (CDS)

ATGGTATCCAAAACGAAACGAAACGACAGATCGAAAAACGAAAACCTACTTCCACTTGATCTTCATATTGCAAGGGAACAAACGACGTCGTTGAGTCCTTGGTCCGCTAGCTCGCCAGATTCGGAGCTTCATTCGACGCCGCTGGAGCAGGAGGCCTTGCCGCCGTCGCGGCCGCCGGATCAGCGCTGCGACTCTGCTGTGGAGAGTCGAGTGCGCACCGCCAGATTCGACCGTGGATCCCGGTCCGGCCGGCGGCGGCGGTTCGGAAAGGTAATCGGTGGCCATGAAAACGCCCTGCGAAGGCCTCCTCTGGTGCCTGCCCGGTCGCTGCGACATTTTGCGGCGGAGATTTGA

Protein sequence

MVSKTKRNDRSKNENLLPLDLHIAREQTTSLSPWSASSPDSELHSTPLEQEALPPSRPPDQRCDSAVESRVRTARFDRGSRSGRRRRFGKVIGGHENALRRPPLVPARSLRHFAAEI

Homology

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BLAST of CcUC10G206300 vs. ExPASy TrEMBL
Match: A0A0A0LDR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734890 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-08
Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 12  KNENLLPLDLHIAREQTTSLSPWSASSPDSELHSTPLEQEALPPSRPPDQRCDSAV---- 71
           +NENL+P +LH A E+   +    +  P +    + +        RP   R  +A     
Sbjct: 22  ENENLIPHNLHNAIERNDIV---ESLVPLARRIRSIIIGHRRRSRRPCGYRISAAALLRW 81

Query: 72  ----ESRVRTARFDRGSRSGRRRRFGKVIGGHENALRRPPLVPARSLRHF 114
                +RVRT RFDR SRS  R   G+VIGGHENALRRPPLVPA SLRHF
Sbjct: 82  SSKKSTRVRTTRFDRRSRSNWRWGVGEVIGGHENALRRPPLVPAGSLRHF 128

The following BLAST results are available for this feature:

BLAST of CcUC10G206300 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G206300 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G206300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDR3	7.7e-08	44.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734890 PE=4 SV=1	[more]

BLAST of CcUC10G206300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G206300.1	CcUC10G206300.1	mRNA