CcUC10G205500 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G205500
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Transcription initiation factor TFIID subunit 8
Location	CicolChr10: 32704926 .. 32709058 (+)
RNA-Seq Expression	CcUC10G205500
Synteny	CcUC10G205500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGGAAGACGAATTGGAGAGCAGAACAAGAATTCAAACTAATAGTGCTGTAGTTTTAAGAATTTAGTCATTTCCCAGAGAAGAAAGAAACAAGTACTTGAACTGATTGGAGAGTTGCCACATGTAGGGATTGAACCATGTGAGAAAGGAGAAGGCGGCGGATCCAATCCAAATGTTGACGAAGCGATCTGGGTCGGCGTGTGGAACTCCAGGGTCGCCTCTGTAAGCATTTCCGAAGTACTTCTCCATTGCTTCCTCTCTATCGCTTCGGCTTCTCAGAAACCACTTGCTTCTTTCTGGTTTGTCGTTCTATCTGCTTATCTACAGCCATGGAATGCCCCATTTGCAATCCGCACGTTAATGGGCCGGGTGAGGAGAAGGCCCATTTTATGATGAGACCAAGGCCCAAACATCCACGGCCTCTGATTGAGATTAAGCCCACATGAGTCCGAGGCCCCCAATCTTATTGTGAGTAAGTTAAAGATCGTGCCTCGTTAATTCAATCAACACAATATTTAAATAACATGCGACAACTTGTTAAAATTGGGCAAAGGTACTTCTAATCTCCAAAGTTTGAGGTTAGTATCTATTTGGTCTATGAAGTTTGAAAGTGAACACTTTAATTTATGAAAGTTCATGAGATTTGAAAAATATTTTTAAATAGCTGACCGTTTGTTGACTAACGGAAGAGGGTTGTGATATGTTTGATTAGCAAACTTTAAACAACGAGGAAGGTTTTACTCATTTTATTTGATTGTTAGTTTAATTGCTCTTTCAAACACCGAAGATTTGTGGTAGCATCTATTTCCCTCCACATTCCATTTCCCATTTTCAATTCCCCTTTCTTTTTCCATTTTTTCCCTCCAGGTTTTGCACCATTCAATTACGAGGGTTCCGATCATTGGGACTCTCGCATATTCCTAAATTTCTCTTTATAATAGTTTGTAAAATTGTTATCATTAGTTCTAGAGCTTCCTTTTAGCTTTTTACATTCGTTTCTTCCCAATTTTTCGATGATTCTTTTTATCTTTATATATTTTGGTTAACATTCTTGATTTGGATTATGATTTCATTTTGTAAACTTTTTCACCTTTCTCTTTATTCAACCCACTGTTACAGTTGGGAATCAAAGAAGAATTCAACTATCTTTTCGACAAGCAACTGGATTTTGATCAATTTGAGTGAGGCAAAATTCTAAGAAGATTGAAATGTAGAGGCAATGAGGGATGGGATGGGAATAACATGAAGTTGAAAGAACAACAAAGCTCTAATTCCAAGATAACAGAGGCAGTTAGTTCGGTTGAGGGGTGCCTAGAATTGTTGTTGTGTTGATGTGTAACGGCGCAGGGTTTCAGAGCTTCAAGGAGTTTGCTCTAAATAGATTGGCCGACATTGTCATCAAATACCTTCGCTAATCTGATTAGAGGGCTTGAAGAGTTGTAATCATCACAAGGATTTCAGTGTGTTTGGGAACCAGATTATTGTCTTTACCCATTCAAGGTCGATGAAGAACATTGTTCGCTATGTGAACTCAAATGAAGATCTATCTCTTTTGCTCATCCACTACCACGTTTCCCTGTGATAAAAAAACAGAGAGTCAATTTCAAGCTTTGTTCAGATTGGTGAAACCCCACCTAGCAAACATATTCCCAAGTGGTTGGCAGCATTTCCTGATAATCATGCCTATAGTCATTCAACCTTGTGGAGGAGGAAGCCGAGAGAGCCTTGTGTCAATAAGATAGAGCTTGCAGGGCAACGGAGGCAGCGTTGTGGAGGAGGAACCAGAGAGCGCCTCATGCCGATAAGATGGAGCTTGCGGGGCAGCGGAGGAAGGTAGAGAGAAATCTTTGTTGGGTTTGCAGCAAATGGCAATAGTGACATTGAGTTTTCAAGACGTGAAAGCAATTCATTACTTGGGACATGTTTGCAAGAGATGAAAGATGAGATTGGATTGTCTTCTGAAAACTCAATTGGCAAGGATGGGATAATCCATTTGTCTGGGCCAGAGGTGTTTGATCCTACCATTGAGGCAATTAATGGTGGTGGCTTTCCAAATATTCTACACGACAAGGCCTGTTGTTCATTTCAACTTAGAAGCTTGCAAGACATTTCTCGGAGGGTCTATGAATTTGAATGCTAAAATGGCAGGAAGTAAAGAATCTCTGTTTGTTCTGAACCAGACAAGATGACAAAAGAGATCAAAAGCACAATAACGAAAGAGATGAACAGAAGAGGATAGTTGAATACATTCTCAGACATTCTATAGACAAACCAGAAGATCTAAACTAATCATAACAACGGCCTGATCATATTTATTGTCATTGCTGCTGCTTGCTTCAATGTGTTAAAGCTCCTTCTGAAGCTCACTTTCTCTCTTCAATATTGCAATGGCAGATGCCCCTGTGATCTAAACTTAGAATTTTTCTCTCTTTTTCTTGTTTCATTCATTCTCTCTTTCACATTTGGCTCTGATGCAGCATTTCTTATTTGAGAAACTGTGCATATAGCAAATGAAGCCAATGGGATGACCTTTATTCTGTGCTTGCCGATATAAAAAAGACCCAAGTTTGCATCAGAATACAAAATTCATTTTATAACAAGAACCATGCCATTTCTACCCATCCAAAAGATGCTTAATTCAATAACAATGGATTGTACACAGAAGATAAATTAGCTACCATATTGTCAGAAACACAGACTAATCTCATTTAACCAGATTGCAGAAACACATACTAATCTGTTATATCGATCCAAAAGAGGCCTAATTCAATAACAAAACCAAAACCTTTGTTCTGAGGAAGAGACTATAAAGAAAAACATGGGAAGTACCTCACACTATCCAAAGTAATAAACAAGCTAAGAAACACTAGATTGATGGAACGCAGCAAAATCTCCTTTATGCACCTTTAACGTCCATTTCTGCTTCCAGCTTGGAAGCCTCAAGGCCTGCTTTAGTCATGACTGACATCTCAACGTTTCAGCTTCAAATCTGTTTGCTTGGGAAATAATCTGCCTCGGTGGTTGAAGACCATAAAATCTTGATTGGCAGGAAGAGAAACTATCCTGCAATGGAGAAAATATTTATCTACATGAAAATCAATTTAACTTGCTTGCCAAAACAACATAGTAATAATAGTGAAATTAGTAGTAACAACTCCATATTATTGCAATCATCTAAACTTGAACAAAATTTGAATCAGAGGCTGTGTTTTTTAAAGTTCAAGACGCAATAAAATGCAATAGTCTTTTAGAGCTAAGGAGCAAGCGCAAAAAAGCAAAAAGTGCAGGCTTTTTTTCTGAGCTGTACTATATTTAACAGTAACACATGAATAATAGAAAGCATAGTTAAAACGGAAATATGGAAAGAAAAAAAAAGCCCTAAACACAAGAAATTTTACATTTGGATTTAGTAAATTTGATTTTTTTTTATTTAATAAGGAAGGAAAAACCCTGATAATTACTATATTTTAAAAATAATGAAAAACCCCCAAGTCTTAGGGCTTAAAGCCTTGGGGCTTTACAAAAGGCGCACACCTTATTTTGTGAGCCTCGCCTTGTGCCAAACCTGTGCCTTGAGCCTAGGTGCACGCCCGAGAGGGCTTTTTAAAACACTGATTGAAGGGAGGGGATCTATTCCATGGAAATATGGTGAATAACCCAAAAGCTAAATTCTCCAAAACTTCTAATGAATCATATCTAACTCTCTTAGGATATTTAACAAAAATAAAATAACTACTTGATTCTAGGAAATCATATGCCCCTGCACTTTTTGTTTGAACTTTAAAGCCAAGACACATCAGTAGATTGCCAGACACCCTTGAACAGACCGAGCTGGTAATGAAGGTCATCTCCAATTTAAGGTTTCCACCCATGATTTACAATTCGCTGAGAATTCATAAACTACGTGTAAAGCATTGTCACAACAAGGAAAATGCTGCTACTTCCCCAACAAAATTCTTATAGAGTTACAATAGAATGCAGGTGCTAGTTAGTTTGCTCTATTGCACCGAAGAGTTGGCCACTTTTGTTATTTGTAGGACATGTTTGTTTGAGTTGATGGGAAGGAAACTCAGCTTCTCTTTGATTAAACATTCTCAAATCAAATGCATGACAGAATCCACAAATTAA

mRNA sequence

ATGAAGCAGGAAGACGAATTGGAGAGCAGAACAAGAATTCAAACTAATAGTGCTGGATTGAACCATGTGAGAAAGGAGAAGGCGGCGGATCCAATCCAAATGTTGACGAAGCGATCTGGGTCGGCGTGTGGAACTCCAGGGTCGCCTCTAAACCACTTGCTTCTTTCTGGTTTGTCGTTCTATCTGCTTATCTACAGCCATGGAATGCCCCATTTGCAATCCGCACAGGGCTTGAAGAGTTGTAATCATCACAAGGATTTCAGTGTGTTTGGGAACCAGATTATTGTCTTTACCCATTCAAGGTCGATGAAGAACATTGTTCGCTATATTGGTGAAACCCCACCTAGCAAACATATTCCCAAGTGGTTGGCAGCATTTCCTGATAATCATGCCTATAGTCATTCAACCTTGTGGAGGAGGAAGCCGAGAGAGCCTTGTGTCAATAAGATAGAGCTTGCAGGGCAACGGAGGCAGCGTTGTGGAGGAGGAACCAGAGAGCGCCTCATGCCGATAAGATGGAGCTTGCGGGGCAGCGGAGGAAGCTCACTTTCTCTCTTCAATATTGCAATGGCAGATGCCCCTCCAAGACACATCAGTAGATTGCCAGACACCCTTGAACAGACCGAGCTGGTAATGAAGGTCATCTCCAATTTAAGGTTTCCACCCATGATTTACAATTCGCTGAGAATTCATAAACTACGTAGTTACAATAGAATGCAGGTGCTAGTTAGTTTGCTCTATTGCACCGAAGAGTTGGCCACTTTTGTTATTTGTAGGACATGTTTGTTTGAGTTGATGGGAAGGAAACTCAGCTTCTCTTTGATTAAACATTCTCAAATCAAATGCATGACAGAATCCACAAATTAA

Coding sequence (CDS)

ATGAAGCAGGAAGACGAATTGGAGAGCAGAACAAGAATTCAAACTAATAGTGCTGGATTGAACCATGTGAGAAAGGAGAAGGCGGCGGATCCAATCCAAATGTTGACGAAGCGATCTGGGTCGGCGTGTGGAACTCCAGGGTCGCCTCTAAACCACTTGCTTCTTTCTGGTTTGTCGTTCTATCTGCTTATCTACAGCCATGGAATGCCCCATTTGCAATCCGCACAGGGCTTGAAGAGTTGTAATCATCACAAGGATTTCAGTGTGTTTGGGAACCAGATTATTGTCTTTACCCATTCAAGGTCGATGAAGAACATTGTTCGCTATATTGGTGAAACCCCACCTAGCAAACATATTCCCAAGTGGTTGGCAGCATTTCCTGATAATCATGCCTATAGTCATTCAACCTTGTGGAGGAGGAAGCCGAGAGAGCCTTGTGTCAATAAGATAGAGCTTGCAGGGCAACGGAGGCAGCGTTGTGGAGGAGGAACCAGAGAGCGCCTCATGCCGATAAGATGGAGCTTGCGGGGCAGCGGAGGAAGCTCACTTTCTCTCTTCAATATTGCAATGGCAGATGCCCCTCCAAGACACATCAGTAGATTGCCAGACACCCTTGAACAGACCGAGCTGGTAATGAAGGTCATCTCCAATTTAAGGTTTCCACCCATGATTTACAATTCGCTGAGAATTCATAAACTACGTAGTTACAATAGAATGCAGGTGCTAGTTAGTTTGCTCTATTGCACCGAAGAGTTGGCCACTTTTGTTATTTGTAGGACATGTTTGTTTGAGTTGATGGGAAGGAAACTCAGCTTCTCTTTGATTAAACATTCTCAAATCAAATGCATGACAGAATCCACAAATTAA

Protein sequence

MKQEDELESRTRIQTNSAGLNHVRKEKAADPIQMLTKRSGSACGTPGSPLNHLLLSGLSFYLLIYSHGMPHLQSAQGLKSCNHHKDFSVFGNQIIVFTHSRSMKNIVRYIGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAGQRRQRCGGGTRERLMPIRWSLRGSGGSSLSLFNIAMADAPPRHISRLPDTLEQTELVMKVISNLRFPPMIYNSLRIHKLRSYNRMQVLVSLLYCTEELATFVICRTCLFELMGRKLSFSLIKHSQIKCMTESTN

Homology

[Close]

BLAST of CcUC10G205500 vs. NCBI nr
Match: XP_022983000.1 (transcription initiation factor TFIID subunit 8-like [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 4.8e-13
Identity = 57/147 (38.78%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 68  GMPHLQSAQGLKSC---NHHKDFSVFGNQIIVFTHSRSMKNIVRY--------------- 127
           G+  L+S+QG +     NH              T+S S+K IVRY               
Sbjct: 91  GIEELESSQGFQGAWEPNH------------CLTNSGSVKKIVRYVNSVEEIPFAHPLPR 150

Query: 128 ---------------IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAG 180
                          IGE PPSKHIP WL AFPD H Y+HS LWRRKPREP   KIELA 
Sbjct: 151 FPVIRNREPIPSFVQIGEAPPSKHIPSWLPAFPDAHTYNHSALWRRKPREPRAEKIELAR 210

[Close]

BLAST of CcUC10G205500 vs. NCBI nr
Match: KAG7017372.1 (Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-13
Identity = 57/147 (38.78%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 68  GMPHLQSAQGLKSC---NHHKDFSVFGNQIIVFTHSRSMKNIVRY--------------- 127
           G+  L+S+QG +     NH              T+S S+K+IVRY               
Sbjct: 91  GIEELESSQGFQGAWEPNH------------CLTNSGSVKSIVRYVNSVDEIPFAHPLPR 150

Query: 128 ---------------IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAG 180
                          IGE PPSKHIP WL AFPD H Y+HS LWRRKPREP   KIELA 
Sbjct: 151 FPVIRNREPIPSFVQIGEAPPSKHIPSWLPAFPDAHTYNHSALWRRKPREPRAEKIELAR 210

[Close]

BLAST of CcUC10G205500 vs. NCBI nr
Match: KAG6580615.1 (Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-13
Identity = 57/147 (38.78%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 68  GMPHLQSAQGLKSC---NHHKDFSVFGNQIIVFTHSRSMKNIVRY--------------- 127
           G+  L+S+QG +     NH              T+S S+K+IVRY               
Sbjct: 91  GIEELESSQGFQGAWEPNH------------CLTNSGSVKSIVRYVNSVDEIPFAHPLPR 150

Query: 128 ---------------IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAG 180
                          IGE PPSKHIP WL AFPD H Y+HS LWRRKPREP   KIELA 
Sbjct: 151 FPVIRNREPIPSFVQIGEAPPSKHIPSWLPAFPDAHTYNHSALWRRKPREPRAEKIELAR 210

[Close]

BLAST of CcUC10G205500 vs. NCBI nr
Match: XP_023529053.1 (transcription initiation factor TFIID subunit 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-13
Identity = 57/147 (38.78%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 68  GMPHLQSAQGLKSC---NHHKDFSVFGNQIIVFTHSRSMKNIVRY--------------- 127
           G+  L+S+QG +     NH              T+S S+K+IVRY               
Sbjct: 91  GIEELESSQGFQGAWEPNH------------CLTNSGSVKSIVRYVNSVEEIPFAHPLPR 150

Query: 128 ---------------IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAG 180
                          IGE PPSKHIP WL AFPD H Y+HS LWRRKPREP   KIELA 
Sbjct: 151 FPVIRNREPIPSFVQIGEAPPSKHIPSWLPAFPDAHTYNHSALWRRKPREPRAEKIELAR 210

[Close]

BLAST of CcUC10G205500 vs. NCBI nr
Match: XP_022934759.1 (transcription initiation factor TFIID subunit 8-like [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-13
Identity = 57/147 (38.78%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 68  GMPHLQSAQGLKSC---NHHKDFSVFGNQIIVFTHSRSMKNIVRY--------------- 127
           G+  L+S+QG +     NH              T+S S+K+IVRY               
Sbjct: 91  GIEELESSQGFQGAWEPNH------------CLTNSGSVKSIVRYVNSVDEIPFAHPLPR 150

Query: 128 ---------------IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAG 180
                          IGE PPSKHIP WL AFPD H Y+HS LWRRKPREP   KIELA 
Sbjct: 151 FPVIRNREPIPSFVQIGEAPPSKHIPSWLPAFPDAHTYNHSALWRRKPREPRAEKIELAR 210

[Close]

BLAST of CcUC10G205500 vs. ExPASy Swiss-Prot
Match: Q9SYZ9 (Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana OX=3702 GN=TAF8 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-09
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 94  IIVFTHSRSMKNIVRYIGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELA 153
           + +   SR M      IGETPP KHIP WL AFPD H Y  + +W  +  +P  +KIE A
Sbjct: 140 VAISDRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQA 199

Query: 154 GQRRQ 159
            QRR+
Sbjct: 200 RQRRK 204

[Close]

BLAST of CcUC10G205500 vs. ExPASy TrEMBL
Match: A0A6J1J4F9 (Transcription initiation factor TFIID subunit 8 OS=Cucurbita maxima OX=3661 GN=LOC111481673 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 57/147 (38.78%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 68  GMPHLQSAQGLKSC---NHHKDFSVFGNQIIVFTHSRSMKNIVRY--------------- 127
           G+  L+S+QG +     NH              T+S S+K IVRY               
Sbjct: 91  GIEELESSQGFQGAWEPNH------------CLTNSGSVKKIVRYVNSVEEIPFAHPLPR 150

Query: 128 ---------------IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAG 180
                          IGE PPSKHIP WL AFPD H Y+HS LWRRKPREP   KIELA 
Sbjct: 151 FPVIRNREPIPSFVQIGEAPPSKHIPSWLPAFPDAHTYNHSALWRRKPREPRAEKIELAR 210

[Close]

BLAST of CcUC10G205500 vs. ExPASy TrEMBL
Match: A0A6J1F3H6 (Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN=LOC111441840 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-13
Identity = 57/147 (38.78%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 68  GMPHLQSAQGLKSC---NHHKDFSVFGNQIIVFTHSRSMKNIVRY--------------- 127
           G+  L+S+QG +     NH              T+S S+K+IVRY               
Sbjct: 91  GIEELESSQGFQGAWEPNH------------CLTNSGSVKSIVRYVNSVDEIPFAHPLPR 150

Query: 128 ---------------IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELAG 180
                          IGE PPSKHIP WL AFPD H Y+HS LWRRKPREP   KIELA 
Sbjct: 151 FPVIRNREPIPSFVQIGEAPPSKHIPSWLPAFPDAHTYNHSALWRRKPREPRAEKIELAR 210

[Close]

BLAST of CcUC10G205500 vs. ExPASy TrEMBL
Match: A0A0A0LDI8 (Transcription initiation factor TFIID subunit 8 OS=Cucumis sativus OX=3659 GN=Csa_3G740170 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-13
Identity = 51/106 (48.11%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 90  FGNQIIVFTHSRSMKNIVRY--IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCV 149
           F + +  F+  R  ++I  +  IGETPPSKHIP WL AFPD H YSHS LWRRKP+E   
Sbjct: 132 FAHPLPCFSVIRKRESIPTFVQIGETPPSKHIPSWLPAFPDAHTYSHSALWRRKPKELRA 191

Query: 150 NKIELAGQRR--QRCGGGTRERLMPIRWSLRG------SGGSSLSL 186
            KIELA QRR  ++   G ++RL+       G      SGG S SL
Sbjct: 192 EKIELAKQRRKAEKSLLGLQQRLVSCGSERSGNGEIEFSGGESNSL 237

[Close]

BLAST of CcUC10G205500 vs. ExPASy TrEMBL
Match: A0A1S3B6Z5 (Transcription initiation factor TFIID subunit 8 OS=Cucumis melo OX=3656 GN=LOC103486494 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-12
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 90  FGNQIIVFTHSRSMKNIVRY--IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCV 149
           F + +  F   R  ++I  +  IGETPPSKHIP WL AFPD H YSHS LWRRKP+E   
Sbjct: 132 FAHPLPCFPVIRKRESIPTFVQIGETPPSKHIPSWLPAFPDAHTYSHSALWRRKPKELRA 191

Query: 150 NKIELAGQRR--QRCGGGTRERLMPIRWSLRGSG 180
            KIELA QRR  ++   G ++RL+       G+G
Sbjct: 192 EKIELARQRRKAEKSLLGLQQRLVSCGSERSGNG 225

[Close]

BLAST of CcUC10G205500 vs. ExPASy TrEMBL
Match: A0A5D3DNP1 (Transcription initiation factor TFIID subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002670 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-12
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 90  FGNQIIVFTHSRSMKNIVRY--IGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCV 149
           F + +  F   R  ++I  +  IGETPPSKHIP WL AFPD H YSHS LWRRKP+E   
Sbjct: 132 FAHPLPCFPVIRKRESIPTFVQIGETPPSKHIPSWLPAFPDAHTYSHSALWRRKPKELRA 191

Query: 150 NKIELAGQRR--QRCGGGTRERLMPIRWSLRGSG 180
            KIELA QRR  ++   G ++RL+       G+G
Sbjct: 192 EKIELARQRRKAEKSLLGLQQRLVSCGSERSGNG 225

[Close]

BLAST of CcUC10G205500 vs. TAIR 10
Match: AT4G34340.1 (TBP-associated factor 8 )

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-10
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 94  IIVFTHSRSMKNIVRYIGETPPSKHIPKWLAAFPDNHAYSHSTLWRRKPREPCVNKIELA 153
           + +   SR M      IGETPP KHIP WL AFPD H Y  + +W  +  +P  +KIE A
Sbjct: 140 VAISDRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQA 199

Query: 154 GQRRQ 159
            QRR+
Sbjct: 200 RQRRK 204

The following BLAST results are available for this feature:

BLAST of CcUC10G205500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983000.1	4.8e-13	38.78	transcription initiation factor TFIID subunit 8-like [Cucurbita maxima]	[more]
KAG7017372.1	6.3e-13	38.78	Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma...	[more]
KAG6580615.1	6.3e-13	38.78	Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma...	[more]
XP_023529053.1	6.3e-13	38.78	transcription initiation factor TFIID subunit 8-like [Cucurbita pepo subsp. pepo...	[more]
XP_022934759.1	6.3e-13	38.78	transcription initiation factor TFIID subunit 8-like [Cucurbita moschata]	[more]

BLAST of CcUC10G205500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYZ9	3.3e-09	46.15	Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CcUC10G205500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4F9	2.3e-13	38.78	Transcription initiation factor TFIID subunit 8 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F3H6	3.0e-13	38.78	Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0LDI8	6.8e-13	48.11	Transcription initiation factor TFIID subunit 8 OS=Cucumis sativus OX=3659 GN=Cs...	[more]
A0A1S3B6Z5	1.5e-12	48.94	Transcription initiation factor TFIID subunit 8 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3DNP1	1.5e-12	48.94	Transcription initiation factor TFIID subunit 8 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of CcUC10G205500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34340.1	2.4e-10	46.15	TBP-associated factor 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	PFAM	PF10406	TAF8_C	coord: 118..158 e-value: 2.7E-7 score: 31.1
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	CDD	cd08049	TAF8	coord: 118..158 e-value: 2.28722E-8 score: 47.6527
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G205500.1	CcUC10G205500.1	mRNA