CcUC10G205310 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G205310
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Nodulin-like domain-containing protein
Location	CicolChr10: 32539196 .. 32541180 (-)
RNA-Seq Expression	CcUC10G205310
Synteny	CcUC10G205310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTAGCAACTAGAAGGACTTCTATTATATCGACAACAAAATAAGTAAAATAATTCTTTTTCGGTACCTATCATGTATCCAAAAATAAGTAAATAAATTATCTTGGATGTAGTTGTGAAATTGGCTGGCCCTAGGTACGATTTTCTAACTCTAAGATCACGTGATTTTTTTTTTTTTATTTTTAATGTTAAATTATTGTTTCAAAATTTGAAAGATATAACATATTTAGGTTTGATAGACTCTACTTTCAAATGGTTTTTAATCTATTGGTCCTAACTTCTTTTATAAATACTTAAAATTGGTATCGTTCCATTGATTTCAATAAGCAATATTGACAGAAGGGAACATGGAAAACTCTCTTAGTACTAATTTTTTTTTTTTTTTTGGTCACAAAATAGCGTATTTCATTTACTATCCACTTATGAGTCCTGAAATCAATTTTATTTTTTTAAATAATTTTTTTTCCTGCATCACACTTAATTTGTTGAGTTTGTCCACTCTCTTGTATCACTCTTACCAAATAACCACTTCTTGGTTCAATTAGCATGTTGCATTAATAGAGAAAGTAACAAAACAATGACTCATTATCATTTAAAAAGTAGAATTACAAAATATATGCTTGAGTTCTAAAAGTTGAAAATTTATTTTTATCTTTCATAAATGTTTTTAAAATTATTATTGGAGAAATATTCCTTAAAATAATAATCTGATCACAAATTGGTAATACAAGAACCAATGAACCACATTAGATTAGATGAAAATGACTGACATTAAGAGTGTTGGTTGGGTGCTCTGAGATGGATCATTGGGATTGTATCTGCTTGGCTAGACTTGAATTCAGTCCAAAGAGGCAATGAAGTTAAGCCTCTTAAGACTATCGCTTTTTGCGAGTGACTGAAACAGATTTGCTTTGCAAACGTGTGTAATATTTGGGCTGATTCTGATTGTTTGAAAATGATGAATGTATTTCTTTGAAGTTGAGAAAGCTAGGTGCATTTAAAATTTAATTTCAAATTTATGTAAACTAAACGTTTTATAGCTGTGTACAAAATTTAACCAAACCTATAAAAAGATAATAAATACTTAGATAAGTTAGGAAAAAATACTCTTGCCATACAACTAACTTTATAGTAGGAAAAATTGCAACAAATACAATACACACGAAGTGTCATTGTTGTGATTGTTCTGCTTTTACTACCTCTAGTTGTCGTAATTTTCAAAAAGGAATTGGGCGTTTGGAAGAATAAAATAGGAAACTCAATTTCACAAGTAGCATTAGCATCTCAACAACCACCATCGCCACTGACCTCGGTGGTGCCATTGGCATTGTTGAGCTCTTCGTTGGGTTACTGCTTTAAAAATACAATTTTAAACCCCCCAAAAAGTGGAAAGGATTGCACAATTCCACAAATTGTTTTCAACATCGATATGATAATTCTTTTCATGACCACAATCAATGGTGTCGATGGAACATTGACGGTGATTGACAATTGGGGTTAAATCGAGGAGTCTTTGGGGTACCCCTCTCACAGTACCACTGCATTCATCTCTCTCATCAATATATGGAACTACCTCGGTTGTGTAGTCTCCGAATTCGTATCAAAATATTTTTGGAAAAAGTACAAAGTTTCATGTCCTCTATTTATTCTCACGACATTTATTTTGTCTTGAGTTGGCCATTTTCTAATCACATTAGGAGTTCTGAATTCGCAACATTTTCCTTCAATCATAATCAGGTTCTACTTTTGTGCGCAGTGGACATTGAACTTAACAAACATATAAAAATTTGTTGGGTTGAAGTACTACGCGACTTTGTATAATTTGGGAGGAACGGCAAGCCTGATTGAGGCGTATGTTATGAACGTGATAGTAGCAAGTCATTTGTATGATAGGGAAGCAGAGCGGGAGATGGATGCGGCGGGGCGACAGAGAAAATAGAGGAGGATTTGAGTTGCTTGAGAGTGGAATATAACATAATTTAA

mRNA sequence

ATGGTTGTGAAATTGGCTGGCCCTAGGTTTGATAGACTCTACTTTCAAATGGAAAAATTGCAACAAATACAATACACACGAAGTGTCATTGTTGTGATTGTTCTGCTTTTACTACCTCTAGTTGTCGTAATTTTCAAAAAGGAATTGGGCGTTTGGAAGAATAAAATAGGAAACTCAATTTCACAAGTAGCATTAGCATCTCAACAACCACCATCGCCACTGACCTCGGTGGTGCCATTGGCATTGTTGAGCTCTTCGTTGGGTTACTGCTTTAAAAATACAATTTTAAACCCCCCAAAAAGTGGAAAGGATTGCACAATTCCACAAATTGTTTTCAACATCGATATGATAATTCTTTTCATGACCACAATCAATGGTGTCGATGGAACATTGACGTACCACTGCATTCATCTCTCTCATCAATATATGGAACTACCTCGGTTGTGTAGTCTCCGAATTCGTATCAAAATATTTTTGGAAAAAGGAAGCAGAGCGGGAGATGGATGCGGCGGGGCGACAGAGAAAATAGAGGAGGATTTGAGTTGCTTGAGAGTGGAATATAACATAATTTAA

Coding sequence (CDS)

ATGGTTGTGAAATTGGCTGGCCCTAGGTTTGATAGACTCTACTTTCAAATGGAAAAATTGCAACAAATACAATACACACGAAGTGTCATTGTTGTGATTGTTCTGCTTTTACTACCTCTAGTTGTCGTAATTTTCAAAAAGGAATTGGGCGTTTGGAAGAATAAAATAGGAAACTCAATTTCACAAGTAGCATTAGCATCTCAACAACCACCATCGCCACTGACCTCGGTGGTGCCATTGGCATTGTTGAGCTCTTCGTTGGGTTACTGCTTTAAAAATACAATTTTAAACCCCCCAAAAAGTGGAAAGGATTGCACAATTCCACAAATTGTTTTCAACATCGATATGATAATTCTTTTCATGACCACAATCAATGGTGTCGATGGAACATTGACGTACCACTGCATTCATCTCTCTCATCAATATATGGAACTACCTCGGTTGTGTAGTCTCCGAATTCGTATCAAAATATTTTTGGAAAAAGGAAGCAGAGCGGGAGATGGATGCGGCGGGGCGACAGAGAAAATAGAGGAGGATTTGAGTTGCTTGAGAGTGGAATATAACATAATTTAA

Protein sequence

MVVKLAGPRFDRLYFQMEKLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVVPLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLTYHCIHLSHQYMELPRLCSLRIRIKIFLEKGSRAGDGCGGATEKIEEDLSCLRVEYNII

Homology

[Close]

BLAST of CcUC10G205310 vs. NCBI nr
Match: KAA0043983.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis melo var. makuwa] >TYK25157.1 protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 7.3e-26
Identity = 73/114 (64.04%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           + QQIQY  S IVVIVLLLLPL +V F++EL VWK+KI N I Q+ LASQQPP PLTS V
Sbjct: 242 RFQQIQYVGSAIVVIVLLLLPLAIV-FREELSVWKSKIANPILQLELASQQPPPPLTSTV 301

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
           PLA  S     CFKN +  PP  G+D TIPQ +F+IDMIILF+ TI GV GTLT
Sbjct: 302 PLAPSSPPSDSCFKN-MFKPPNRGEDYTIPQAIFSIDMIILFIATICGVGGTLT 353

[Close]

BLAST of CcUC10G205310 vs. NCBI nr
Match: XP_011651970.1 (uncharacterized protein LOC101216551 [Cucumis sativus] >KGN58997.1 hypothetical protein Csa_001993 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 6.8e-24
Identity = 69/114 (60.53%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           + QQIQY  S IVVIVLLLLPL +V F++EL VWK+KI + + Q+  ASQQPP PLTS V
Sbjct: 242 RFQQIQYVGSAIVVIVLLLLPLTIV-FREELSVWKSKIASPVLQLESASQQPPPPLTSTV 301

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
            LA  S     CFKN + NPP  G+D TIPQ +F++D+IILFM TI GV GTLT
Sbjct: 302 SLAPSSPPSESCFKN-MFNPPSRGEDYTIPQAIFSMDLIILFMATICGVGGTLT 353

[Close]

BLAST of CcUC10G205310 vs. NCBI nr
Match: KAG6596491.1 (Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-23
Identity = 68/114 (59.65%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           K  Q++Y  S IVVI LLLLPL +V +++EL VWK KI + +SQ+ LASQQ P PLTS  
Sbjct: 240 KFHQMEYAGSAIVVIALLLLPLAIV-YREELSVWKTKIESPLSQLELASQQQPPPLTSAA 299

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
           PLA  S   G CF+NT   PP  G+D TIPQ VF+IDMIILF+ TI GV GTLT
Sbjct: 300 PLAPPSPPSGSCFENT-FKPPNRGEDYTIPQAVFSIDMIILFIATICGVGGTLT 351

[Close]

BLAST of CcUC10G205310 vs. NCBI nr
Match: XP_038905012.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-23
Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           + QQIQY  S IVVIVLLLLPL +V F++EL VWK+KI N I Q+ LASQQPP P     
Sbjct: 240 RFQQIQYVGSAIVVIVLLLLPLAIV-FREELNVWKSKIANPILQLELASQQPPRP----P 299

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
           PLA  S   G CFKNT   PP  G+D TIPQ +F++DMIILF+ TI GV GTLT
Sbjct: 300 PLAPPSPPSGSCFKNT-FKPPNRGEDYTIPQAIFSVDMIILFIATICGVGGTLT 347

[Close]

BLAST of CcUC10G205310 vs. NCBI nr
Match: XP_022947808.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 9.8e-23
Identity = 67/114 (58.77%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           K  Q++Y  S IVVI LLLLPL +V +++EL VWK KI + +SQ+ LASQQ P PLTS  
Sbjct: 240 KFHQMEYAGSAIVVIALLLLPLAIV-YREELSVWKTKIESPLSQLELASQQQPPPLTSAA 299

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
           P+A  S   G CF+NT   PP  G+D TIPQ VF+IDMIILF+ TI GV GTLT
Sbjct: 300 PVAPPSPPSGSCFENT-FKPPNRGEDYTIPQAVFSIDMIILFIATICGVGGTLT 351

[Close]

BLAST of CcUC10G205310 vs. ExPASy TrEMBL
Match: A0A5A7TKH4 (Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002830 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 73/114 (64.04%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           + QQIQY  S IVVIVLLLLPL +V F++EL VWK+KI N I Q+ LASQQPP PLTS V
Sbjct: 242 RFQQIQYVGSAIVVIVLLLLPLAIV-FREELSVWKSKIANPILQLELASQQPPPPLTSTV 301

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
           PLA  S     CFKN +  PP  G+D TIPQ +F+IDMIILF+ TI GV GTLT
Sbjct: 302 PLAPSSPPSDSCFKN-MFKPPNRGEDYTIPQAIFSIDMIILFIATICGVGGTLT 353

[Close]

BLAST of CcUC10G205310 vs. ExPASy TrEMBL
Match: A0A0A0LEA4 (Nodulin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G742600 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 69/114 (60.53%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           + QQIQY  S IVVIVLLLLPL +V F++EL VWK+KI + + Q+  ASQQPP PLTS V
Sbjct: 242 RFQQIQYVGSAIVVIVLLLLPLTIV-FREELSVWKSKIASPVLQLESASQQPPPPLTSTV 301

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
            LA  S     CFKN + NPP  G+D TIPQ +F++D+IILFM TI GV GTLT
Sbjct: 302 SLAPSSPPSESCFKN-MFNPPSRGEDYTIPQAIFSMDLIILFMATICGVGGTLT 353

[Close]

BLAST of CcUC10G205310 vs. ExPASy TrEMBL
Match: A0A6J1G7M8 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451560 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-23
Identity = 67/114 (58.77%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           K  Q++Y  S IVVI LLLLPL +V +++EL VWK KI + +SQ+ LASQQ P PLTS  
Sbjct: 240 KFHQMEYAGSAIVVIALLLLPLAIV-YREELSVWKTKIESPLSQLELASQQQPPPLTSAA 299

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
           P+A  S   G CF+NT   PP  G+D TIPQ VF+IDMIILF+ TI GV GTLT
Sbjct: 300 PVAPPSPPSGSCFENT-FKPPNRGEDYTIPQAVFSIDMIILFIATICGVGGTLT 351

[Close]

BLAST of CcUC10G205310 vs. ExPASy TrEMBL
Match: A0A1S4DUK0 (uncharacterized protein LOC103487133 OS=Cucumis melo OX=3656 GN=LOC103487133 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.2e-23
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           + QQIQY  S IVVIVLLLLPL +V F++EL VWK+KI N I Q+ LASQQPP PLTS V
Sbjct: 242 RFQQIQYVGSAIVVIVLLLLPLAIV-FREELSVWKSKIANPILQLELASQQPPPPLTSTV 301

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTI 125
           PLA  S     CFKN +  PP  G+D TIPQ +F+IDMIILF+ TI
Sbjct: 302 PLAPSSPPSDSCFKN-MFKPPNRGEDYTIPQAIFSIDMIILFIATI 345

[Close]

BLAST of CcUC10G205310 vs. ExPASy TrEMBL
Match: A0A1S3B711 (LOW QUALITY PROTEIN: protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=3656 GN=LOC103486508 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 69/114 (60.53%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 19  KLQQIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVV 78
           + QQIQY  S IVVIVLLLLPL  ++F++EL VWK KI N ISQ+ LASQQPP P  S V
Sbjct: 236 RFQQIQYVGSAIVVIVLLLLPLAAIVFREELIVWKRKIANPISQLELASQQPP-PRISAV 295

Query: 79  PLALLSSSLGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTTINGVDGTLT 133
           PL+  S S   CFKN +  PP  G+D TIPQ +F++DM ILFM TI  V GTLT
Sbjct: 296 PLSPPSDS---CFKN-MFKPPNRGEDYTIPQAIFSVDMKILFMATICAVGGTLT 344

[Close]

BLAST of CcUC10G205310 vs. TAIR 10
Match: AT2G39210.1 (Major facilitator superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 22  QIQYTRSVIVVIVLLLLPLVVVIFKKELGVWKNKIGNSISQVALASQQPPSPLTSVVPLA 81
           Q ++  S  VVIVLLLLP++VVI  +E  +WK K      QVAL     P+P+  V    
Sbjct: 244 QSEFGGSAAVVIVLLLLPIIVVIL-EEKKLWKEK------QVAL---NDPAPINVVTEKP 303

Query: 82  LLSSS------------------LGYCFKNTILNPPKSGKDCTIPQIVFNIDMIILFMTT 133
            L SS                     C+  T+ NPP+ G D TI Q +F++DM+ILF+ T
Sbjct: 304 KLDSSEFKDDDGEESKEVVEKVKTPSCW-TTVFNPPERGDDYTILQALFSVDMLILFLAT 361

The following BLAST results are available for this feature:

BLAST of CcUC10G205310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043983.1	7.3e-26	64.04	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis melo var. makuwa] >TYK25157.1 p...	[more]
XP_011651970.1	6.8e-24	60.53	uncharacterized protein LOC101216551 [Cucumis sativus] >KGN58997.1 hypothetical ...	[more]
KAG6596491.1	4.4e-23	59.65	Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_038905012.1	4.4e-23	61.40	protein NUCLEAR FUSION DEFECTIVE 4-like [Benincasa hispida]	[more]
XP_022947808.1	9.8e-23	58.77	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata]	[more]

BLAST of CcUC10G205310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G205310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKH4	3.5e-26	64.04	Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LEA4	3.3e-24	60.53	Nodulin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G74260...	[more]
A0A6J1G7M8	4.8e-23	58.77	protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S4DUK0	6.2e-23	63.21	uncharacterized protein LOC103487133 OS=Cucumis melo OX=3656 GN=LOC103487133 PE=...	[more]
A0A1S3B711	1.1e-22	60.53	LOW QUALITY PROTEIN: protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=...	[more]

BLAST of CcUC10G205310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39210.1	1.2e-10	40.31	Major facilitator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21576:SF122	MFS TRANSPORTER	coord: 19..132
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 19..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G205310.1	CcUC10G205310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane