CcUC10G205070 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G205070
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	F-box protein CPR30-like
Location	CicolChr10: 32344414 .. 32344767 (+)
RNA-Seq Expression	CcUC10G205070
Synteny	CcUC10G205070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCAATGGATCCATCGTTCTTTTTTCTTATCCATATGCTGGAGAAATTTTTGACATTTGGGAGATGGAGAAGGATGAATTTGCAGTTGTTTCGTGGTCAAAGCTATTGACCATTGGCCCTCTTTGTGGAATTGAATTTCCATTGTTGTTTGTAAACTCCGATGAACTTTTAATGGAGTCCAAAGAAGGACAGGTGGTTTTGTACAGTATTAAAGCTCAACAGGTCAAAGAGCTCCCAATAAAAGGGGAAAACCCGCATGGATGGAGAACCAATCGGTTTGAAGCTACTTTTTTCATTAAGAGTTTGCTACCCGTGGAAGGAAGAAATAATATCAGTTATGAGTTTTAG

mRNA sequence

ATGGTTTTCAATGGATCCATCGTTCTTTTTTCTTATCCATATGCTGGAGAAATTTTTGACATTTGGGAGATGGAGAAGGATGAATTTGCAGTTGTTTCGTGGTCAAAGCTATTGACCATTGGCCCTCTTTGTGGAATTGAATTTCCATTGTTGTTTGTAAACTCCGATGAACTTTTAATGGAGTCCAAAGAAGGACAGGTGGTTTTGTACAGTATTAAAGCTCAACAGGTCAAAGAGCTCCCAATAAAAGGGGAAAACCCGCATGGATGGAGAACCAATCGGTTTGAAGCTACTTTTTTCATTAAGAGTTTGCTACCCGTGGAAGGAAGAAATAATATCAGTTATGAGTTTTAG

Coding sequence (CDS)

ATGGTTTTCAATGGATCCATCGTTCTTTTTTCTTATCCATATGCTGGAGAAATTTTTGACATTTGGGAGATGGAGAAGGATGAATTTGCAGTTGTTTCGTGGTCAAAGCTATTGACCATTGGCCCTCTTTGTGGAATTGAATTTCCATTGTTGTTTGTAAACTCCGATGAACTTTTAATGGAGTCCAAAGAAGGACAGGTGGTTTTGTACAGTATTAAAGCTCAACAGGTCAAAGAGCTCCCAATAAAAGGGGAAAACCCGCATGGATGGAGAACCAATCGGTTTGAAGCTACTTTTTTCATTAAGAGTTTGCTACCCGTGGAAGGAAGAAATAATATCAGTTATGAGTTTTAG

Protein sequence

MVFNGSIVLFSYPYAGEIFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELLMESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYEF

Homology

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BLAST of CcUC10G205070 vs. NCBI nr
Match: XP_038906036.1 (F-box protein CPR1-like [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYAGE--IFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           V NGSIVLF YP  G+   FDIWEMEKDE   VSWSKLLTIGP+ GIE PLLFV+SDELL
Sbjct: 269 VLNGSIVLFHYPSRGDERSFDIWEMEKDESGGVSWSKLLTIGPVSGIEKPLLFVSSDELL 328

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYEF 118
           ME+ EGQV+LY+I+ QQ+KE+P+KG         RF+ T F+KSL+ V+G N ISYEF
Sbjct: 329 MEASEGQVILYNIRTQQLKEVPVKG------HPARFQGTVFVKSLMSVKGGNKISYEF 380

[Close]

BLAST of CcUC10G205070 vs. NCBI nr
Match: XP_022983805.1 (F-box protein CPR1-like [Cucurbita maxima])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYAGE--IFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           + NGSIVLF YP  G+   FDIW MEKDEF  VSWSKLLTIGPL GIE PL+FV+SDELL
Sbjct: 269 ILNGSIVLFHYPSRGDEREFDIWGMEKDEFGGVSWSKLLTIGPLRGIEKPLVFVSSDELL 328

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYE 117
           ME+ EGQ+VLY+ + QQ+KELPIKG         RF+AT F+KSL+ V G NN+ YE
Sbjct: 329 MEANEGQIVLYNARIQQLKELPIKG------HPARFQATLFVKSLVSVNGGNNLKYE 379

[Close]

BLAST of CcUC10G205070 vs. NCBI nr
Match: XP_023526117.1 (F-box protein CPR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYAGE--IFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           V NGSIVLF YP  G+   FDIWE+ KDEF  VSWSKLLTIGPL GIE PL+FV+SDELL
Sbjct: 269 VLNGSIVLFHYPSRGDEREFDIWEIVKDEFGGVSWSKLLTIGPLGGIEKPLVFVSSDELL 328

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYE 117
           ME+ EG++VLY+ + QQ KELPI G         RF+AT F+KSL+ V+GRNN+ YE
Sbjct: 329 MEANEGRMVLYNARTQQWKELPING------HPARFQATLFVKSLVSVKGRNNLKYE 379

[Close]

BLAST of CcUC10G205070 vs. NCBI nr
Match: XP_022935692.1 (F-box protein CPR30-like [Cucurbita moschata])

HSP 1 Score: 141.4 bits (355), Expect = 5.1e-30
Identity = 73/117 (62.39%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYAGE--IFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           V NGSIVLF YP  G+   FDIW MEKDEF  VSWSKLL IGPL GIE PL+FV+ DELL
Sbjct: 269 VLNGSIVLFRYPSRGDEREFDIWGMEKDEFGGVSWSKLLRIGPLRGIEKPLVFVSFDELL 328

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYE 117
           ME+ EGQ+VLY+ + QQ+KELPI G         RF+AT F+KSL+ V+G NN+ YE
Sbjct: 329 MEANEGQIVLYNARTQQLKELPING------HPARFQATLFVKSLVSVKGGNNLKYE 379

[Close]

BLAST of CcUC10G205070 vs. NCBI nr
Match: XP_004137986.3 (F-box protein CPR1-like [Cucumis sativus] >KGN59208.2 hypothetical protein Csa_000815 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 8.7e-30
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYAGE---IFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDEL 61
           + NGSIVLF Y ++G+   +FDIW+MEKDEF  + W KL T+GP+  +E+PLLFV+S+EL
Sbjct: 290 ILNGSIVLFDYIHSGQNDKMFDIWKMEKDEFGAILWLKLFTVGPISKVEYPLLFVSSNEL 349

Query: 62  LMESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYEF 118
           LME KEG+++LY IK  + KELPIKG      R N  +ATF++KSLL VEG N I+YEF
Sbjct: 350 LMECKEGELILYDIKTGEYKELPIKGYQELKGR-NNMKATFYVKSLLSVEGGNVINYEF 407

[Close]

BLAST of CcUC10G205070 vs. ExPASy TrEMBL
Match: A0A6J1J6Y5 (F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.9e-32
Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYAGE--IFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           + NGSIVLF YP  G+   FDIW MEKDEF  VSWSKLLTIGPL GIE PL+FV+SDELL
Sbjct: 269 ILNGSIVLFHYPSRGDEREFDIWGMEKDEFGGVSWSKLLTIGPLRGIEKPLVFVSSDELL 328

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYE 117
           ME+ EGQ+VLY+ + QQ+KELPIKG         RF+AT F+KSL+ V G NN+ YE
Sbjct: 329 MEANEGQIVLYNARIQQLKELPIKG------HPARFQATLFVKSLVSVNGGNNLKYE 379

[Close]

BLAST of CcUC10G205070 vs. ExPASy TrEMBL
Match: A0A6J1F6B1 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442474 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 73/117 (62.39%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYAGE--IFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           V NGSIVLF YP  G+   FDIW MEKDEF  VSWSKLL IGPL GIE PL+FV+ DELL
Sbjct: 269 VLNGSIVLFRYPSRGDEREFDIWGMEKDEFGGVSWSKLLRIGPLRGIEKPLVFVSFDELL 328

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYE 117
           ME+ EGQ+VLY+ + QQ+KELPI G         RF+AT F+KSL+ V+G NN+ YE
Sbjct: 329 MEANEGQIVLYNARTQQLKELPING------HPARFQATLFVKSLVSVKGGNNLKYE 379

[Close]

BLAST of CcUC10G205070 vs. ExPASy TrEMBL
Match: A0A6J1F3M5 (F-box/kelch-repeat protein At3g23880-like OS=Cucurbita moschata OX=3662 GN=LOC111442078 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 2   VFNGSIVLFSYPYA--GEIFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           V NGSIVLF YP++  G  FD+W ME DE   VSWSKLLTIGPL GIE PL+FV S ELL
Sbjct: 280 VLNGSIVLFHYPWSGNGREFDVWGMENDESGGVSWSKLLTIGPLYGIEKPLVFVGSHELL 339

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYEF 118
           ME+ EGQV+LY+ + QQ  ++PIKG         RF AT F++SL+ V+G NN++YEF
Sbjct: 340 MEANEGQVILYNTRTQQFIKVPIKGH-------ERFHATVFVESLVSVKGGNNLTYEF 390

[Close]

BLAST of CcUC10G205070 vs. ExPASy TrEMBL
Match: A0A6J1J5F7 (F-box/kelch-repeat protein At3g23880-like OS=Cucurbita maxima OX=3661 GN=LOC111481910 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.9e-28
Identity = 69/118 (58.47%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 2   VFNGSIVLFSYPY--AGEIFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           V NGSIVLF YP+   G  FD+W ME DE   VSWSKLLTIGPL GIE PL+FV S ELL
Sbjct: 280 VLNGSIVLFHYPWNGNGREFDLWGMENDESGGVSWSKLLTIGPLYGIEKPLVFVGSHELL 339

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYEF 118
           ME+  GQV+LY+ + QQ ++LPIKG         RF AT F++SL+ V+G NN++YEF
Sbjct: 340 MEANGGQVILYNTRTQQFRKLPIKGH-------ERFHATVFVESLVSVKGGNNLTYEF 390

[Close]

BLAST of CcUC10G205070 vs. ExPASy TrEMBL
Match: A0A6J1F5F2 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442473 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.2e-28
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   VFNGSIVLFSYP--YAGEIFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELL 61
           V NGSIVLF YP     + F+IWEMEKDEF  VSWSKLLTIGPL GI  PL+FV S+ELL
Sbjct: 270 VLNGSIVLFHYPSEEGEKEFEIWEMEKDEFGGVSWSKLLTIGPLFGIGKPLVFVGSNELL 329

Query: 62  MESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYE 117
           MES EGQVVLY+ + +Q++ELP+KG NP  ++    +AT F++ L+ V+G NN+ YE
Sbjct: 330 MESIEGQVVLYNTRTKQLRELPMKG-NPEEFQAT--QATVFVEGLVSVKGGNNLKYE 383

The following BLAST results are available for this feature:

BLAST of CcUC10G205070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906036.1	1.9e-32	64.41	F-box protein CPR1-like [Benincasa hispida]	[more]
XP_022983805.1	1.2e-31	64.10	F-box protein CPR1-like [Cucurbita maxima]	[more]
XP_023526117.1	1.3e-30	63.25	F-box protein CPR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935692.1	5.1e-30	62.39	F-box protein CPR30-like [Cucurbita moschata]	[more]
XP_004137986.3	8.7e-30	57.14	F-box protein CPR1-like [Cucumis sativus] >KGN59208.2 hypothetical protein Csa_0...	[more]

BLAST of CcUC10G205070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G205070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6Y5	5.9e-32	64.10	F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1	[more]
A0A6J1F6B1	2.5e-30	62.39	F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442474 PE=4 SV=1	[more]
A0A6J1F3M5	1.8e-28	58.47	F-box/kelch-repeat protein At3g23880-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1J5F7	3.9e-28	58.47	F-box/kelch-repeat protein At3g23880-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1F5F2	5.2e-28	59.83	F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442473 PE=4 SV=1	[more]

BLAST of CcUC10G205070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G205070.1	CcUC10G205070.1	mRNA