CcUC10G201950 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G201950
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	CicolChr10: 29133134 .. 29134440 (+)
RNA-Seq Expression	CcUC10G201950
Synteny	CcUC10G201950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCAAGAGCAACAGATGTTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAACAACAATCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGAAGAGTCGGATCTAAATGTTGGCTAGGTAAGCGAAGAGGAGTAGTTATGAACCTTGTAGACCATCCCTATGGGGGTGGTGAAAGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCTTGCACTTGGAAGAAGAGGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAAGAGAGAAAATCGAATTTGTTTCTTCGCCTTTAAAAACTAAAAAATAGGAGGTAAATTCACTGTATTTATCTTATCAGTTATATATTCTATAACTATATATTATGGGCGAACGACGAGAATTGAACCCACGCATGGTGGATTCACAATTCACTGCCTTGATCCACTTGGTACATCCGCCCCCTACCCTATATATAAGTAGAAATCCTAAAAAAAAGTTCCATTCGAGATTGGACTAAGAAAGGGAAGGAAGAAGGCAAGTCAGTATGCTAATGCCTCATCCTCAAATCAATCCTTCCCATAGGTTATTGTCCCAACGAATAAGTAATTGTAGGAGTGGAAGCTTCATATAATTCGAAAAAACAAGAGCAGCAAGTCCAAGTAAATAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGTCAAAAGGATTTGCAAATAAAAGTGCTAATGCTACAACCAGTCCATAAATTGTTAAAACTTCCATAAAAGCCAGACTAAGAAATAAAGTACCTCAGATTTTCCCCTCCGCCTGGGGTTGTCTCGCGATCCCTTCTACAGCTTGGCCCGCGGCGGTACCT

mRNA sequence

ACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCAAGAGCAACAGATGTTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAACAACAATCGGACAAGTGGGGAATGCTGGGGAGTGGAAGCTTCATATAATTCGAAAAAACAAGAGCAGCAAGTCCAAACTAAGAAATAAAGTACCTCAGATTTTCCCCTCCGCCTGGGGTTGTCTCGCGATCCCTTCTACAGCTTGGCCCGCGGCGGTACCT

Coding sequence (CDS)

ACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCAAGAGCAACAGATGTTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAACAACAATCGGACAAGTGGGGAATGCTGGGGAGTGGAAGCTTCATATAATTCGAAAAAACAAGAGCAGCAAGTCCAAACTAAGAAATAAAGTACCTCAGATTTTCCCCTCCGCCTGGGGTTGTCTCGCGATCCCTTCTACAGCTTGGCCCGCGGCGGTACCT

Protein sequence

TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNAGEWKLHIIRKNKSSKSKLRNKVPQIFPSAWGCLAIPSTAWPAAVP

Homology

[Close]

BLAST of CcUC10G201950 vs. NCBI nr
Match: AXU40408.1 (ribosomal protein L2 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           TTIHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 138 TTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 197

Query: 61  G 62
           G
Sbjct: 198 G 198

[Close]

BLAST of CcUC10G201950 vs. NCBI nr
Match: AXU40407.1 (ribosomal protein L2 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           TTIHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 137 TTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. NCBI nr
Match: RZC71849.1 (hypothetical protein C5167_035027 [Papaver somniferum])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
          TTIHNIEITLGKGGQLARA  V+AKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGN 
Sbjct: 5  TTIHNIEITLGKGGQLARAAGVIAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 64

Query: 61 G 62
          G
Sbjct: 65 G 65

[Close]

BLAST of CcUC10G201950 vs. NCBI nr
Match: KAA0063016.1 (ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
          T IHNIEITLGKGGQLARA  VVAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 5  TAIHNIEITLGKGGQLARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 64

Query: 61 G 62
          G
Sbjct: 65 G 65

[Close]

BLAST of CcUC10G201950 vs. NCBI nr
Match: QCD92446.1 (photosystem II CP47 chlorophyll apoprotein [Vigna unguiculata])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGN 
Sbjct: 87  TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 146

Query: 61  G--EWKLHIIRKNKSSKSKLRNKVPQIF 87
           G  +  L I    ++ K  L   +P+IF
Sbjct: 147 GVNQKNLEIFCDERTGKPSL--DLPKIF 172

[Close]

BLAST of CcUC10G201950 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 137 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLG+GGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 138 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 197

Query: 61  G 62
           G
Sbjct: 198 G 198

[Close]

BLAST of CcUC10G201950 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLG+GGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. ExPASy Swiss-Prot
Match: A4GYV2 (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLG+GGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. ExPASy Swiss-Prot
Match: Q8S8V3 (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGN 
Sbjct: 137 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. ExPASy TrEMBL
Match: A0A346TM17 (50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.5e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           TTIHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 137 TTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. ExPASy TrEMBL
Match: A0A346TM18 (50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.5e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           TTIHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 138 TTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 197

Query: 61  G 62
           G
Sbjct: 198 G 198

[Close]

BLAST of CcUC10G201950 vs. ExPASy TrEMBL
Match: A0A4Y7KIS3 (Ribosomal_L2_C domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_035027 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.2e-21
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
          TTIHNIEITLGKGGQLARA  V+AKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGN 
Sbjct: 5  TTIHNIEITLGKGGQLARAAGVIAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 64

Query: 61 G 62
          G
Sbjct: 65 G 65

[Close]

BLAST of CcUC10G201950 vs. ExPASy TrEMBL
Match: A0A5A7V9A1 (Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001180 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.2e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
          T IHNIEITLGKGGQLARA  VVAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGNA
Sbjct: 5  TAIHNIEITLGKGGQLARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 64

Query: 61 G 62
          G
Sbjct: 65 G 65

[Close]

BLAST of CcUC10G201950 vs. ExPASy TrEMBL
Match: A0A4D6LWS2 (Photosystem II CP47 chlorophyll apoprotein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g509 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.3e-21
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLGKGGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGN 
Sbjct: 87  TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 146

Query: 61  G--EWKLHIIRKNKSSKSKLRNKVPQIF 87
           G  +  L I    ++ K  L   +P+IF
Sbjct: 147 GVNQKNLEIFCDERTGKPSL--DLPKIF 172

[Close]

BLAST of CcUC10G201950 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLG+GGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGN 
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   TTIHNIEITLGKGGQLARATDVVAKLIAKEGKSATLKLPSGEVRLISKNCSTTIGQVGNA 60
           T IHNIEITLG+GGQLARA   VAKLIAKEGKSATLKLPSGEVRLISKNCS T+GQVGN 
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 61  G 62
           G
Sbjct: 197 G 197

[Close]

BLAST of CcUC10G201950 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 3   IHNIEITLGKGGQLARATDVVAKLIAKEGKSAT--LKLPSGEVRLISKNCSTTIGQVGNA 62
           I N+E+ +G  G LARA+   A +IA   +S T  +KLPSG  +++   C   IGQV   
Sbjct: 114 ICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGG 173

Query: 63  GEWKLHIIR 70
           G  +  +++
Sbjct: 174 GRTEKPLLK 182

The following BLAST results are available for this feature:

BLAST of CcUC10G201950 vs. NCBI nr


Match Name	E-value	Identity	Description
AXU40408.1	1.1e-20	91.80	ribosomal protein L2 [Gomphogyne cissiformis var. villosa]	[more]
AXU40407.1	1.1e-20	91.80	ribosomal protein L2 [Gomphogyne cissiformis var. villosa]	[more]
RZC71849.1	1.5e-20	90.16	hypothetical protein C5167_035027 [Papaver somniferum]	[more]
KAA0063016.1	1.5e-20	91.80	ribosomal protein L2 [Cucumis melo var. makuwa]	[more]
QCD92446.1	1.9e-20	69.32	photosystem II CP47 chlorophyll apoprotein [Vigna unguiculata]	[more]

BLAST of CcUC10G201950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK5	5.6e-23	90.16	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q14F95	1.3e-22	88.52	50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=...	[more]
Q14FB6	1.3e-22	88.52	50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=...	[more]
A4GYV2	1.3e-22	88.52	50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A...	[more]
Q8S8V3	1.6e-22	88.52	50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-...	[more]

BLAST of CcUC10G201950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A346TM17	5.5e-21	91.80	50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa O...	[more]
A0A346TM18	5.5e-21	91.80	50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa O...	[more]
A0A4Y7KIS3	7.2e-21	90.16	Ribosomal_L2_C domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_...	[more]
A0A5A7V9A1	7.2e-21	91.80	Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A4D6LWS2	9.3e-21	69.32	Photosystem II CP47 chlorophyll apoprotein OS=Vigna unguiculata OX=3917 GN=DEO72...	[more]

BLAST of CcUC10G201950 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	2.6e-23	86.89	ribosomal protein L2	[more]
ATCG01310.1	2.6e-23	86.89	ribosomal protein L2	[more]
AT3G51190.1	2.7e-04	36.23	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..93 e-value: 1.4E-9 score: 32.8
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..82 e-value: 1.4E-19 score: 70.5
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..59 e-value: 7.1E-24 score: 85.6
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..70
None	No IPR available	PANTHER	PTHR13691:SF42	SUBFAMILY NOT NAMED	coord: 1..70
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G201950.1	CcUC10G201950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity