CcUC10G199690 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G199690
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	CicolChr10: 26479637 .. 26480591 (-)
RNA-Seq Expression	CcUC10G199690
Synteny	CcUC10G199690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAG

mRNA sequence

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAG

Coding sequence (CDS)

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAG

Protein sequence

MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIHLGSADYVMDEVLLTGTWSNWEKP

Homology

[Close]

BLAST of CcUC10G199690 vs. NCBI nr
Match: APW82621.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 542.0 bits (1395), Expect = 3.2e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. NCBI nr
Match: YP_009431632.1 (RNA polymerase beta'' subunit [Citrullus rehmii] >ASY96233.1 RNA polymerase beta'' subunit [Citrullus rehmii])

HSP 1 Score: 542.0 bits (1395), Expect = 3.2e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. NCBI nr
Match: YP_009420784.1 (RNA polymerase beta'' subunit [Citrullus colocynthis] >ASP44453.1 RNA polymerase beta'' subunit [Citrullus colocynthis])

HSP 1 Score: 542.0 bits (1395), Expect = 3.2e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. NCBI nr
Match: YP_009431547.1 (RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris] >ASY96148.1 RNA polymerase beta'' subunit [Citrullus amarus])

HSP 1 Score: 542.0 bits (1395), Expect = 3.2e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. NCBI nr
Match: APW82451.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 542.0 bits (1395), Expect = 3.2e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 2.8e-152
Identity = 268/271 (98.89%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIG+RNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.1e-148
Identity = 261/271 (96.31%), Postives = 266/271 (98.15%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAER +LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5   MAERVNLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+SVSP N M+PERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCI IRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIAIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 4.1e-148
Identity = 262/271 (96.68%), Postives = 266/271 (98.15%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLID FGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDRFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           +TDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 VTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP NR +PERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIF 240

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCI IRNQDIGI L
Sbjct: 241 IQTLIGRVLADDIYMGPRCIAIRNQDIGIGL 271

[Close]

BLAST of CcUC10G199690 vs. ExPASy Swiss-Prot
Match: Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 5.4e-148
Identity = 262/271 (96.68%), Postives = 265/271 (97.79%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           M ERA+LVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5   MTERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNTNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP N MIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCI IRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIAIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. ExPASy Swiss-Prot
Match: Q2L8Z5 (DNA-directed RNA polymerase subunit beta'' OS=Gossypium hirsutum OX=3635 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 4.6e-147
Identity = 259/271 (95.57%), Postives = 264/271 (97.42%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+K LGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHH+GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHFGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP  R +PERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTTRGISVSPQKRTLPERIF 240

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCI IRNQDIG+ L
Sbjct: 241 IQTLIGRVLADDIYMGPRCIAIRNQDIGLGL 271

[Close]

BLAST of CcUC10G199690 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.6e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. ExPASy TrEMBL
Match: A0A1P8LF52 (DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.6e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 244

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 275

[Close]

BLAST of CcUC10G199690 vs. ExPASy TrEMBL
Match: A0A7T3QNJ7 (RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.6e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 47  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 106

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 107 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 166

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 167 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 226

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 227 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 286

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 287 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 317

[Close]

BLAST of CcUC10G199690 vs. ExPASy TrEMBL
Match: A0A2Z2CLN5 (DNA-directed RNA polymerase subunit beta'' OS=Coccinia grandis OX=387127 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.6e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 271

[Close]

BLAST of CcUC10G199690 vs. ExPASy TrEMBL
Match: A0A2Z2CGG3 (DNA-directed RNA polymerase subunit beta'' OS=Coccinia grandis OX=387127 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.6e-150
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 240

Query: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IQTLIGRVLADDIYMGPRCIGIRNQDIGI L
Sbjct: 241 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 271

[Close]

BLAST of CcUC10G199690 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 513.5 bits (1321), Expect = 1.2e-145
Identity = 257/273 (94.14%), Postives = 264/273 (96.70%), Query Frame = 0


Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--GNRMIPER 240
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP   NRM+ ER
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240

Query: 241 IFIQTLIGRVLADDIYMGPRCIGIRNQDIGIHL 272
           IFIQTLIGRVLADDIY+G RC+  RNQD+GI L
Sbjct: 241 IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGL 273

[Close]

BLAST of CcUC10G199690 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-06
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 224
           ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 876

[Close]

BLAST of CcUC10G199690 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 48.9 bits (115), Expect = 8.0e-06
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 224
           + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 835 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 894

Query: 225 GIS 228
             S
Sbjct: 895 NAS 895

[Close]

BLAST of CcUC10G199690 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 48.9 bits (115), Expect = 8.0e-06
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 224
           + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 852 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 911

Query: 225 GIS 228
             S
Sbjct: 912 NAS 912

[Close]

BLAST of CcUC10G199690 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-05
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 126  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 185
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 186  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 225
                  GL   EY   C   R+G+VDTAV+TS +GYL R L++ ++ + V   DC T+R
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKV-NYDC-TVR 1052

The following BLAST results are available for this feature:

BLAST of CcUC10G199690 vs. NCBI nr


Match Name	E-value	Identity	Description
APW82621.1	3.2e-150	99.63	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]
YP_009431632.1	3.2e-150	99.63	RNA polymerase beta'' subunit [Citrullus rehmii] >ASY96233.1 RNA polymerase beta...	[more]
YP_009420784.1	3.2e-150	99.63	RNA polymerase beta'' subunit [Citrullus colocynthis] >ASP44453.1 RNA polymerase...	[more]
YP_009431547.1	3.2e-150	99.63	RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta...	[more]
APW82451.1	3.2e-150	99.63	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]

BLAST of CcUC10G199690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	2.8e-152	98.89	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q49L08	1.1e-148	96.31	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
B1A925	4.1e-148	96.68	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]
Q0ZJ30	5.4e-148	96.68	DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P...	[more]
Q2L8Z5	4.6e-147	95.57	DNA-directed RNA polymerase subunit beta'' OS=Gossypium hirsutum OX=3635 GN=rpoC...	[more]

BLAST of CcUC10G199690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LFL6	1.6e-150	99.63	DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 S...	[more]
A0A1P8LF52	1.6e-150	99.63	DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rp...	[more]
A0A7T3QNJ7	1.6e-150	99.63	RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1	[more]
A0A2Z2CLN5	1.6e-150	99.63	DNA-directed RNA polymerase subunit beta'' OS=Coccinia grandis OX=387127 GN=rpoC...	[more]
A0A2Z2CGG3	1.6e-150	99.63	DNA-directed RNA polymerase subunit beta'' OS=Coccinia grandis OX=387127 GN=rpoC...	[more]

BLAST of CcUC10G199690 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	1.2e-145	94.14	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	1.6e-06	38.33	RNA polymerase II large subunit	[more]
AT5G60040.1	8.0e-06	34.92	nuclear RNA polymerase C1	[more]
AT5G60040.2	8.0e-06	34.92	nuclear RNA polymerase C1	[more]
AT3G57660.1	1.8e-05	31.93	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 95..157 e-value: 5.4E-11 score: 42.4
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 172..229 e-value: 8.7E-20 score: 71.3
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 59..196 e-value: 5.9E-48 score: 164.5
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 1..58 e-value: 1.3E-11 score: 46.8
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 1..271
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..271
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 9..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G199690.1	CcUC10G199690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding