CcUC10G197160 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G197160
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPorphobilinogen deaminaseic
LocationCicolChr10: 23726264 .. 23730769 (+)
RNA-Seq ExpressionCcUC10G197160
SyntenyCcUC10G197160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTAAGTGTCGATGCTAGTTCGTACACATTTCGACTATTCTCATGAGACAAATATCCTATTACATTTTATTGTCAATGTCAAGGTATATTCAGTAGTTGACCATCGTAGTTTCAACTCATCTCTTCCAAGGCCTGTAATTTGACTTTATGTACATTCAGTTTTTAATATTCTTTTCCAATTTACGAAGCTCACGAGAGAGAATATACATTTATTATGGAGAGAAAAACTGCATTTAATATGATTTTTCTTTTCATTTTCATGTGGGGAGAGAAAATATATTTAATATAATTTTTTTTCTCATTTTTAATTGGAGAGAGAAAATGCATTTAATATTTTTTTTATTTTCCATTTCGTTTTTCATGTTTGAGTTTTGATATTATGTGATATATTATGTTGTTTGTTTTGAATATTATTTGTTTTCATGTAATATATTCAATTATTTATTTGGTATATATATCCCAAATATTCTTATATGTATGCCCTATCACTTGTACCTATAATATATTTCCTCGATATTCTGATATGTATGACAATATATTCTATTGTTTGTTTGGGTATATGTCCTAAATATTTTGATATGTATACATTTATTAGGTATCACTTGTGCCTATAATATATTCCCCAATGTTTTGATATGTATGACAATATATTTCGTTCTTTGTTTGGGGTATATTCCTAAGTATTCTGACAATATTCCATTGTTTGGAGTATATATCCTAAGTATTCTGATGTTCTGAAATGTATGACAATATATTTCATTATTTGCTTAGGGTATATATCCTAAGTATTGTGATATGTATGCACTTCTAATTAGGTATCGCTTGTTGTGATATGTATGCACTTCTAATTAGGTATCGCTTGTGTCTTTTATCTGGTGTATACATCCCAAGTATTCTGATATGTATGCTTTGATGTTTGCAAATATTCCAACTAATATATGAAATATATTGGTAAGATTGACTACACATTCAACATAAATCACATTATATATCATATATTCTATTTAAGTAGCTAGAAATCCCAATAAATCAAAACTTAACATAAGTTCCTAACAGAAATTGCTAATTCGCAATCAACGTGACAACTTCAAATTCATTTTCAAACCACATAATTCTCAAATAAACAAAACTATATACCACAGTATATATAATTATGGATGTACTAAATGTTCAATATATATGAGTGTATATATCATGAAACAAGAAATTTAAATATATAAACGAATATATATATCATAATATATCGAAAAATCAAAGAAGACTACATACATCCCCAAATCGAACCAAAGTGGTCTTAATGAATCGACCAAACCACGACGACGAAATCTGAGGAAGCAACCCACGACGGCGAGATCTGAGAAATAAATTTCTTTAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAGAAAGCGGTTCTTCATAGCTAGCAATTTTCACGAGACCGGCAGCCACAGGTGTAGACAAGGATGGCCGGAACAGCAGGAACGACGACCACTAGTGCAAGCAGGAACAACCGAAACTTGAACGACGAGATTAACGGACAACACACGGAATGGCGAACAACAAGTTGAATGACGACAACGGCATCATCGACGATGGCGGGGTGGATTGAGGGAGGGAGGCGGCGATTGGAGAAAGGGAGGAGGAAGAAAGAGGAAGTGGAAGAATTTAACATTTTTTTTCTTTTTTAAAAAGACATTAACAGGTGTGAAACCCCAAGTCTCCGCAAAGAAGAGAGAGAAACTTTATATATATATATATATATATACAAGGTCTAAATGGTAAATAGCGAAAAAAGTCTAGAAATGCCTTTTATGTAAAAAATGGGATGTTGAAGACATTGATGCAATATGAGCCTTATTTTAAGTTTACGTAGAAGCCCTATATATTTTTTTTCTTTACAAAATCACAAAATTGATAAAACCAAACTCCCAAAATTAATAATGACCAAGATATTTGCATTTTCCATGTAGTTTCAGTTTTGATTTCTTTTCGACTTGAAGAAAAGGCATTCTCATACAATCTTTTCTCACATTGAAAAAAACGATAATGAAGCAATATTGAAAGCACACAGATAAGGGGCAAATTGTATTGATTATTTGGGGGAAGCCATATAGTCTAAATGATTTCTGTTCTAATTTACACTACCAACTAAGAAACCAAAGGAGTGGGAAAAGAAAATCCATATTTAAAATACAACAAGCTTCAACTCAAAGGATGAATAAAACTCCTACTCACTTGAAAATTTGGATATGAAGCCTTGATCTTTTCTCACTGGCCTTGTCCTAAATTCTAAGGTAAACTAACTAGCTATCAAAAAAACCGGGACCTGCTCGAGAAAGAAGCTCCTTGCCAGCATCCTTTCCCATTGCAATCATATCGTCAATGGCATATGGACCTCGTCGAGAAGTTTCAAGAACTGAAATGAAAAGGGAAGAAACAAAGGTGATAATTAAAAGATGATGATAATCAATGTTCTAGCAATGAAGAGAAGAAGCTAATGAAAATAAGAGTAGAAGTTATTTCATCTACTGATCGTATTACCTCGGGTTCCGTCTGGGGAAGCCACCAACCCTTTAAATATACAATTGCCATCTTCATCTCTGGAAGCATATCCTGCAATCGGAGTTCGGCAAGATCCATCCAGAGTCTCAAGGAAAGCTCTCTCACAAACTACAGCCAGTCTTGTTTCCTCGTGGTTTAATGAGGCTAAGTAATTGGCCTGCACAATCAGAAACCAAACAGGAAAGACATTAAGCATTTCTCCAAGCAATGACTTTAAATGGTATACGGAGATAAGATAAGTCAGCCATTTGAGTAGAATCGATGGTTTTCTCAAGAAGATATAGTTATAATGGAAATTGTTAAAAGATCATGGGGGAGTATCAATTTCCATAGCTAATGAAAACACACCATTATGTCATCGTCACTTCGACAGGCAATCCCAATAGCTCCCTGAGCAACAGCTGGAAGCATTTCATCGATTGAAAGGATCGAAGTAACATTTTCTGTCATATTTAAACGCCGAAGTCCAGCCAGAGCCAACAGTGTTGCTTGGACCACACCTTCATTCAGTTTTCTCAACCTTGTTTGGACATTGCCCCGAAAATTCTCCAGCACCTGACAAATGACACCAACCAACAATGGAAAAAACAACAGAGTGTCAGAACCAATCTCTAAGATTGAAAATTTAAGACTCTTTGAATATCCTTAAATCATAGTCATAAATGTTCTATCAAAGTCAAGAATTTTAAATTTAAAGAAAGAACAGGTGGGAGAAGCAGGGAATCTTCCAATCTCGTATGAGAAAATAACCGATCGTCGTCAAACAATGTGACACCCCATTGTAATAGCAATGAATAAGAAGGAAAAAGTTGGAATTTGTTAAGAGAACATAGACAACAGCAATATAGTCAAGGTTTTAAAGATCAACCAATTTAGAAAGAAAACCAAAGAAACATTCCTTCTATCGTGTTTTCTAGGAGCCTAATTCACACATCAGCTGAGATCAACAATCTATTAACTGTTGTAGCGATGTAAACGTAGAACATAAACATTTTGGACGATTTTCCATTAAATAACACAGCATTCTTACTTTGAGCGATGGATATCTATTCAGTAGCTGAGACTTTCTTCTCAGTGAAGCTGTACCGATGATGCTTCCAGCTGTAAGCTCAGCAAGTGAACCTGCACTTAGAGAAATGAAGGCATCACGGACATCCTCTCTTGGAAGATTACACGGGAGGATGGTTTTCTCGGGTAAGTAAGTTGGTACATCTTTCATTGAGTGAACAGCAATGTCGATGTCACCATTAATAAGTGCATCATCAATCTCTTTAGTAAATAAGCCTTTCCCACCAATGTCTGCAAGTGGCTGAGAGAGTATTTTGTCACCAGTTGTTTTGATTACAACAATCTGAATGGCCCCATCTTCGGCTAGCTCGGGATGGGAAGCCATGAGTTTGTCTCTCGTCTCATGAGCCTGGGCAAGAGCTAATGGGCTGTCCTACATGCAGAAATTATATATGACACAGTAGAAGATAAAGCAACCCAATACGAGATTTAGATCAAACAAGCATATAGAAAATGATGTAGACTATGTTTATAGACATAGTTCCCCGTTTTGTTAAGAAAACTACATACCCCTTAATTCCTACCAAATTAGAATTGCCGGGAAGAATATAAAGGCATACAAAAAACCAAACCCACAAAAAGAGCCCCTCTAAAAACAAGGGGACCAAGCAAAATAGTACCAATAGAAAAGTCGCAAAAAAGACGTAACTTCAAATTTGAAGTCTAAAGAGAAACATGAAACCTTTGAATTTGAAGCCCCTCTTAGACTTACTCTTCTTATAAAGAACTCATTCTACTCTAGCAGCAGCAGATTGGATCCTAGCATTGATGGCATGACCAACATGAATACTTTATATGAATTTAATCAATTCAGAAGACAAGCACCTAAAAGTAAGGAGGGGAGAGTTCTCCACAATTGTTAGTCCTTAG

mRNA sequence

ATGATTCTATCAAAAAAACCGGGACCTGCTCGAGAAAGAAGCTCCTTGCCAGCATCCTTTCCCATTGCAATCATATCGTCAATGGCATATGGACCTCGTCGAGAAGTTTCAAGAACTGAAATGAAAAGGGAAGAAACAAAGAAGTTATTTCATCTACTGATCGTATTACCTCGGGTTCCGTCTGGGGAAGCCACCAACCCTTTAAATATACAATTGCCATCTTCATCTCTGGAAGCATATCCTGCAATCGGAGTTCGGCAAGATCCATCCAGAGTCTCAAGGAAAGCTCTCTCACAAACTACAGCCAGTCTTGTTTCCTCGTGGTTTAATGAGGCTAATGAAGCTGTACCGATGATGCTTCCAGCTGTAAGCTCAGCAAGTGAACCTGCACTTAGAGAAATGAAGGCATCACGGACATCCTCTCTTGGAAGATTACACGGGAGGATGGTTTTCTCGGAAGACAAGCACCTAAAAGTAAGGAGGGGAGAGTTCTCCACAATTGTTAGTCCTTAG

Coding sequence (CDS)

ATGATTCTATCAAAAAAACCGGGACCTGCTCGAGAAAGAAGCTCCTTGCCAGCATCCTTTCCCATTGCAATCATATCGTCAATGGCATATGGACCTCGTCGAGAAGTTTCAAGAACTGAAATGAAAAGGGAAGAAACAAAGAAGTTATTTCATCTACTGATCGTATTACCTCGGGTTCCGTCTGGGGAAGCCACCAACCCTTTAAATATACAATTGCCATCTTCATCTCTGGAAGCATATCCTGCAATCGGAGTTCGGCAAGATCCATCCAGAGTCTCAAGGAAAGCTCTCTCACAAACTACAGCCAGTCTTGTTTCCTCGTGGTTTAATGAGGCTAATGAAGCTGTACCGATGATGCTTCCAGCTGTAAGCTCAGCAAGTGAACCTGCACTTAGAGAAATGAAGGCATCACGGACATCCTCTCTTGGAAGATTACACGGGAGGATGGTTTTCTCGGAAGACAAGCACCTAAAAGTAAGGAGGGGAGAGTTCTCCACAATTGTTAGTCCTTAG

Protein sequence

MILSKKPGPARERSSLPASFPIAIISSMAYGPRREVSRTEMKREETKKLFHLLIVLPRVPSGEATNPLNIQLPSSSLEAYPAIGVRQDPSRVSRKALSQTTASLVSSWFNEANEAVPMMLPAVSSASEPALREMKASRTSSLGRLHGRMVFSEDKHLKVRRGEFSTIVSP
Homology
[Close]
BLAST of CcUC10G197160 vs. NCBI nr
Match: KAB8086038.1 (hypothetical protein EE612_009100, partial [Oryza sativa] >BAS77181.1 Os02g0168850, partial [Oryza sativa Japonica Group])

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-08
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 60  PSGEATNPLNIQLPSSSLEAYPAIGVRQDPSRVSRKALSQTTASLVSSWFNEANEAVPM 119
           PSGEA +P N Q PS S EAY AIGVRQ PSR  + +LS  TA+LVSSWFNE ++++P+
Sbjct: 43  PSGEANSPRNEQFPSLSREAYAAIGVRQLPSRTDKNSLSHATANLVSSWFNE-DKSLPL 100

[Close]
BLAST of CcUC10G197160 vs. ExPASy TrEMBL
Match: A0A2P2JY63 (Porphobilinogen deaminaseic OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.6e-23
Identity = 67/103 (65.05%), Postives = 72/103 (69.90%), Query Frame = 0 

Query: 5   KKPGPARERSSLPASFPIAIISSMAYGPRREVSRTEMKREETKKLFHLLIVLPRVPSGEA 64
           K PGPA E +SLPASFPI  ISS  YGP  EVS T                  RVPSGEA
Sbjct: 32  KNPGPALESNSLPASFPIRTISSRVYGPFLEVSST------------------RVPSGEA 91

Query: 65  TNPLNIQLPSSSLEAYPAIGVRQDPSRVSRKALSQTTASLVSS 108
           T+PLN+QLPSSSL+AYPAIGVRQDPS VSR ALSQ TA+LVSS
Sbjct: 92  TSPLNVQLPSSSLQAYPAIGVRQDPSSVSRNALSQATANLVSS 116

[Close]
BLAST of CcUC10G197160 vs. ExPASy TrEMBL
Match: A0A0P0VFA9 (Os02g0168850 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0168850 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 60  PSGEATNPLNIQLPSSSLEAYPAIGVRQDPSRVSRKALSQTTASLVSSWFNEANEAVPM 119
           PSGEA +P N Q PS S EAY AIGVRQ PSR  + +LS  TA+LVSSWFNE ++++P+
Sbjct: 43  PSGEANSPRNEQFPSLSREAYAAIGVRQLPSRTDKNSLSHATANLVSSWFNE-DKSLPL 100

The following BLAST results are available for this feature:
BLAST of CcUC10G197160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB8086038.12.7e-0861.02hypothetical protein EE612_009100, partial [Oryza sativa] >BAS77181.1 Os02g01688... [more]
BLAST of CcUC10G197160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC10G197160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2JY635.6e-2365.05Porphobilinogen deaminaseic OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A0P0VFA91.3e-0861.02Os02g0168850 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os02... [more]
BLAST of CcUC10G197160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G197160.1CcUC10G197160.1mRNA