CcUC10G196660 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G196660
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Transcription factor UPBEAT1
Location	CicolChr10: 22949220 .. 22949498 (+)
RNA-Seq Expression	CcUC10G196660
Synteny	CcUC10G196660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTGCGCAAAAGAAACGCTTCGAAATCAAGTCTCGGATAAGCAAATCGTGAAACAAGTCAAGAAGAATCTAGAGATGTCGTCGAGGTCGTTGAGATCGGAGAAGAGGATTTGCTTGAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAAAGAGACAGCAGATTATATTGTATGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGATGAGTGA

mRNA sequence

ATGGAAGTTTGCGCAAAAGAAACGCTTCGAAATCAAGTCTCGGATAAGCAAATCGTGAAACAAGTCAAGAAGAATCTAGAGATGTCGTCGAGGTCGTTGAGATCGGAGAAGAGGATTTGCTTGAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAAAGAGACAGCAGATTATATTGTATGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGATGAGTGA

Coding sequence (CDS)

ATGGAAGTTTGCGCAAAAGAAACGCTTCGAAATCAAGTCTCGGATAAGCAAATCGTGAAACAAGTCAAGAAGAATCTAGAGATGTCGTCGAGGTCGTTGAGATCGGAGAAGAGGATTTGCTTGAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAAAGAGACAGCAGATTATATTGTATGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGATGAGTGA

Protein sequence

MEVCAKETLRNQVSDKQIVKQVKKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

Homology

[Close]

BLAST of CcUC10G196660 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSRSLR-SEKRICLKRIRRLRKMIPKSESME 60
          ME+ AK+T    VSD++I KQV KK +EM SRS R SEKRICLKRIRRL+KM+PKSESME
Sbjct: 1  MEILAKDT----VSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESME 60

Query: 61 LNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
          LNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CcUC10G196660 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSR-SLRSEKRICLKRIRRLRKMIPKSESME 60
          ME+ AK+T    VSD++I KQV KK +EM SR S  SEKRICLKRIR+LRKMIPKSESME
Sbjct: 1  MEILAKDT----VSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESME 60

Query: 61 LNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
          LNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CcUC10G196660 vs. NCBI nr
Match: XP_023896430.1 (transcription factor UPBEAT1 [Quercus suber])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 41  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
           ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V++L GSDE
Sbjct: 88  VRRVRTLKRLIPNSESMGLDGLFQETADYILSLQMRVRAMQVMVNVLGGSDE 139

[Close]

BLAST of CcUC10G196660 vs. NCBI nr
Match: KAF3972052.1 (hypothetical protein CMV_004404 [Castanea mollissima])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 41  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
           ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V++L GSDE
Sbjct: 90  VRRVRTLKRLIPNSESMGLDGLFQETADYILSLQMRVRAMQVMVNVLGGSDE 141

[Close]

BLAST of CcUC10G196660 vs. NCBI nr
Match: XP_034911859.1 (transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protein D5086_0000325720 [Populus alba])

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 42  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
           +R+R L+K+IP SESM L+GLF+ETADYI+ LQM+VR+MQ +V +L GSD+
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSDD 118

[Close]

BLAST of CcUC10G196660 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-06
Identity = 31/84 (36.90%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 9  LRNQVSDKQIVKQV----KKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESME-LNGLF 68
          +R Q + + +VK++    +K++E S R  R+  R    R++ L++++P +++ E L+GLF
Sbjct: 17 MRRQRARRALVKKIMIRPRKSVEASRRPCRAIHR----RVKTLKELVPNTKTSEGLDGLF 76

Query: 69 KETADYIVWLQMKVRMMQALVHIL 88
          ++TADYI+ L+MKV++MQ +V +L
Sbjct: 77 RQTADYILALEMKVKVMQTMVQVL 96

[Close]

BLAST of CcUC10G196660 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSRSLR-SEKRICLKRIRRLRKMIPKSESME 60
          ME+ AK+T    VSD++I KQV KK +EM SRS R SEKRICLKRIRRL+KM+PKSESME
Sbjct: 1  MEILAKDT----VSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESME 60

Query: 61 LNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
          LNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CcUC10G196660 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSR-SLRSEKRICLKRIRRLRKMIPKSESME 60
          ME+ AK+T    VSD++I KQV KK +EM SR S  SEKRICLKRIR+LRKMIPKSESME
Sbjct: 1  MEILAKDT----VSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESME 60

Query: 61 LNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
          LNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CcUC10G196660 vs. ExPASy TrEMBL
Match: A0A4V5ZXB7 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.4e-09
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 42  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
           +R+R L+K+IP SESM L+GLF+ETADYI+ LQM+VR+MQ +V +L GSD+
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSDD 118

[Close]

BLAST of CcUC10G196660 vs. ExPASy TrEMBL
Match: A0A2N9IQ45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54520 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 42  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE 93
           +R++ L+K+IP  +SM L+GLFKETADYI+ LQM+VR MQ +V++L GSDE
Sbjct: 85  RRVKTLKKLIPNGDSMGLDGLFKETADYILSLQMRVRAMQVMVNVLTGSDE 135

[Close]

BLAST of CcUC10G196660 vs. ExPASy TrEMBL
Match: A0A7J0G0Q9 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_17g0000870 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-08
Identity = 31/58 (53.45%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 34  RSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSD 92
           R  K +  K++R LRK++PKSESM L+GLF++TA+YI+ LQM+V++MQ +V +L+GS+
Sbjct: 60  RRRKTVVEKKVRALRKLVPKSESMGLDGLFRDTAEYILALQMRVQVMQIMVQVLSGSE 117

[Close]

BLAST of CcUC10G196660 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 31/84 (36.90%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 9  LRNQVSDKQIVKQV----KKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESME-LNGLF 68
          +R Q + + +VK++    +K++E S R  R+  R    R++ L++++P +++ E L+GLF
Sbjct: 17 MRRQRARRALVKKIMIRPRKSVEASRRPCRAIHR----RVKTLKELVPNTKTSEGLDGLF 76

Query: 69 KETADYIVWLQMKVRMMQALVHIL 88
          ++TADYI+ L+MKV++MQ +V +L
Sbjct: 77 RQTADYILALEMKVKVMQTMVQVL 96

The following BLAST results are available for this feature:

BLAST of CcUC10G196660 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58133.1	3.2e-27	78.72	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
KAA0038125.1	1.2e-26	78.72	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
XP_023896430.1	1.1e-08	61.54	transcription factor UPBEAT1 [Quercus suber]	[more]
KAF3972052.1	1.1e-08	61.54	hypothetical protein CMV_004404 [Castanea mollissima]	[more]
XP_034911859.1	1.9e-08	62.75	transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protei...	[more]

BLAST of CcUC10G196660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	5.5e-06	36.90	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of CcUC10G196660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6	1.5e-27	78.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A5A7T9M0	5.9e-27	78.72	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A4V5ZXB7	9.4e-09	62.75	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1	[more]
A0A2N9IQ45	1.6e-08	60.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54520 PE=4 SV=1	[more]
A0A7J0G0Q9	2.7e-08	53.45	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_17g0000870 PE=4 SV=1	[more]

BLAST of CcUC10G196660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	3.9e-07	36.90	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 11..89
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 11..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G196660.1	CcUC10G196660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated