CcUC10G195490 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G195490
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 20668405 .. 20668707 (-)
RNA-Seq Expression	CcUC10G195490
Synteny	CcUC10G195490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCATAACTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCAACGACGAGTCGTCTCACCGACGAACACGATCGGATTTTCAGACACCAACGACGTTCGAGTTCTCGGACAAACGATCAACACATGAGTTAATGCATTCCCGCAGTGTTAACAAAGGCGCCTTTGAATCTGGCTTATCTTCTTATCTTAGTCAGGTTTCAAATAAGCCTACTTATTATTATGGTAATCCTCGTTAA

mRNA sequence

ATGGAGGGCTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCATAACTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCAACGACGAGTCGTCTCACCGACGAACACGATCGGATTTTCAGACACCAACGACGTTCGAGTTCTCGGACAAACGATCAACACATGAGTTAATGCATTCCCGCAGTGTTAACAAAGGCGCCTTTGAATCTGGCTTATCTTCTTATCTTAGTCAGGTTTCAAATAAGCCTACTTATTATTATGGTAATCCTCGTTAA

Coding sequence (CDS)

ATGGAGGGCTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCATAACTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCAACGACGAGTCGTCTCACCGACGAACACGATCGGATTTTCAGACACCAACGACGTTCGAGTTCTCGGACAAACGATCAACACATGAGTTAATGCATTCCCGCAGTGTTAACAAAGGCGCCTTTGAATCTGGCTTATCTTCTTATCTTAGTCAGGTTTCAAATAAGCCTACTTATTATTATGGTAATCCTCGTTAA

Protein sequence

MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLINDESSHRRTRSDFQTPTTFEFSDKRSTHELMHSRSVNKGAFESGLSSYLSQVSNKPTYYYGNPR

Homology

[Close]

BLAST of CcUC10G195490 vs. NCBI nr
Match: XP_038905929.1 (uncharacterized protein LOC120091851 [Benincasa hispida])

HSP 1 Score: 158.3 bits (399), Expect = 3.4e-35
Identity = 88/110 (80.00%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLI-NDESSHRRTRSDFQTPTTFEFSD 60
           MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLI NDESSHRRTRSDFQ P   EFSD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLITNDESSHRRTRSDFQ-PPALEFSD 60

Query: 61  KRSTHELMHSRSVNKGA----------FESGLSSYLSQVSNKPTYYYGNP 100
           +RSTHELMHSRSV+KGA          FESG SSY  QV+NKPT YYGNP
Sbjct: 61  QRSTHELMHSRSVSKGAFGSSTRPSYGFESGFSSYPGQVTNKPT-YYGNP 108

[Close]

BLAST of CcUC10G195490 vs. NCBI nr
Match: KGN52765.1 (hypothetical protein Csa_015267 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 6.1e-32
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQTPTTFEFS 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLI  NDESSHRRTRSD+Q P TFEF 
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQ-PPTFEFL 60

Query: 61  DKRSTHELMHSRSVNKGA----------FESGLSSYLSQVSNKPTYYYGNP 100
           D+RST EL HSRSVNK A          FES   SY  QVSN+P Y YGNP
Sbjct: 61  DQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNP 110

[Close]

BLAST of CcUC10G195490 vs. NCBI nr
Match: KAA0044340.1 (putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 80/112 (71.43%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQTPTTFEFS 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLI  NDESSHRRTRSD+Q P TFEF 
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQ-PPTFEFL 60

Query: 61  D-KRSTHELMHSRSVNKGA----------FESGLSSYLSQVSNKPTYYYGNP 100
           D +R + EL HSRSVNK A          FES   SY  QVSN+P Y YGNP
Sbjct: 61  DQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNP 111

[Close]

BLAST of CcUC10G195490 vs. NCBI nr
Match: KAG6576920.1 (hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-29
Identity = 74/90 (82.22%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLINDESSHRRTRSDFQTPTTFEFSDK 60
          MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLL NDESSHRRTRSDFQ P  FE+ D+
Sbjct: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLTNDESSHRRTRSDFQ-PPRFEYLDQ 60

Query: 61 RSTHELMHSRSVNKGAFESGLSSYLSQVSN 91
          RS HELMHSRSV+KGAF    SSY  QVSN
Sbjct: 61 RSGHELMHSRSVSKGAFG---SSYAGQVSN 86

[Close]

BLAST of CcUC10G195490 vs. NCBI nr
Match: KAG7014945.1 (NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-29
Identity = 74/90 (82.22%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLINDESSHRRTRSDFQTPTTFEFSDK 60
          MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLL NDESSHRRTRSDFQ P  FE+ D+
Sbjct: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLTNDESSHRRTRSDFQ-PPRFEYLDQ 60

Query: 61 RSTHELMHSRSVNKGAFESGLSSYLSQVSN 91
          RS HELMHSRSV+KGAF    SSY  QVSN
Sbjct: 61 RSGHELMHSRSVSKGAFG---SSYAGQVSN 86

[Close]

BLAST of CcUC10G195490 vs. ExPASy TrEMBL
Match: A0A0A0KT06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-32
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQTPTTFEFS 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLI  NDESSHRRTRSD+Q P TFEF 
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQ-PPTFEFL 60

Query: 61  DKRSTHELMHSRSVNKGA----------FESGLSSYLSQVSNKPTYYYGNP 100
           D+RST EL HSRSVNK A          FES   SY  QVSN+P Y YGNP
Sbjct: 61  DQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNP 110

[Close]

BLAST of CcUC10G195490 vs. ExPASy TrEMBL
Match: A0A5A7TM95 (Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00650 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.0e-30
Identity = 80/112 (71.43%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQTPTTFEFS 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLI  NDESSHRRTRSD+Q P TFEF 
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQ-PPTFEFL 60

Query: 61  D-KRSTHELMHSRSVNKGA----------FESGLSSYLSQVSNKPTYYYGNP 100
           D +R + EL HSRSVNK A          FES   SY  QVSN+P Y YGNP
Sbjct: 61  DQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNP 111

[Close]

BLAST of CcUC10G195490 vs. ExPASy TrEMBL
Match: A0A5C7I5L1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011123 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.6e-16
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLIN----DESSHRRTRSDFQTPT-TF 60
          MEGLIP+L HAMKKQ+P+H+YRS SVGS+RSYHLL      D SSHRRTRSDFQ PT T 
Sbjct: 1  MEGLIPFLIHAMKKQRPQHSYRSFSVGSTRSYHLLNGGDAVDGSSHRRTRSDFQPPTSTA 60

Query: 61 EFSDKRSTHELMHSRSVNKGAFESGLSS 84
          +F  +RS  E + SR+VN+ + E+  SS
Sbjct: 61 QFLGQRSGIEFVRSRTVNRPSSENYNSS 88

[Close]

BLAST of CcUC10G195490 vs. ExPASy TrEMBL
Match: A0A6P4MYQ3 (uncharacterized protein LOC108463487 OS=Gossypium arboreum OX=29729 GN=LOC108463487 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 55/107 (51.40%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLIN-------DESSHRRTRSDFQTPT 60
           MEGLIPYL HAMKKQ P + YRS SVGSSR YHLL+        + SSHRRTRS+FQ PT
Sbjct: 1   MEGLIPYLIHAMKKQNPSNRYRSMSVGSSRGYHLLMEQSPAESVEGSSHRRTRSEFQPPT 60

Query: 61  TFEFSDKRSTHELMHSRSVNKGAFESGLSSYLSQVSNKPTYYYGNPR 101
           T EFS++RS   L+ S+  N  ++ +  SS ++  S   +YY  N +
Sbjct: 61  TVEFSEQRSGLGLVSSKGDNYSSYLNYPSS-MAGSSKAGSYYQQNSK 106

[Close]

BLAST of CcUC10G195490 vs. ExPASy TrEMBL
Match: A0A2P5WX17 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G048800v1 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 55/107 (51.40%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLIN-------DESSHRRTRSDFQTPT 60
           MEGLIPYL HAMKKQKP + YRS SVGSSR YHLL+        + SSHRRTRS+FQ PT
Sbjct: 1   MEGLIPYLIHAMKKQKPSNRYRSMSVGSSRGYHLLMEQSPAESVEGSSHRRTRSEFQPPT 60

Query: 61  TFEFSDKRSTHELMHSRSVNKGAFESGLSSYLSQVSNKPTYYYGNPR 101
           T EF ++RS   L+ S+  N  ++ +  SS ++  S   +YY  N +
Sbjct: 61  TVEFFEQRSGLGLVSSKGDNYSSYLNYPSS-MAGSSKAGSYYQQNSK 106

[Close]

BLAST of CcUC10G195490 vs. TAIR 10
Match: AT3G19615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKK-QKPRH-NYRSQSVGSSRSYHLLINDE--------SSHRRTRSDFQ 60
          MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L+  +        SSHRRTRSD+ 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

Query: 61 TPTTFEFSDKRST 64
               +  D+RS+
Sbjct: 61 PHVIMDKFDQRSS 73

The following BLAST results are available for this feature:

BLAST of CcUC10G195490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905929.1	3.4e-35	80.00	uncharacterized protein LOC120091851 [Benincasa hispida]	[more]
KGN52765.1	6.1e-32	73.87	hypothetical protein Csa_015267 [Cucumis sativus]	[more]
KAA0044340.1	1.7e-29	71.43	putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 p...	[more]
KAG6576920.1	2.8e-29	82.22	hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014945.1	2.8e-29	82.22	NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of CcUC10G195490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G195490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT06	2.9e-32	73.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1	[more]
A0A5A7TM95	8.0e-30	71.43	Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5C7I5L1	6.6e-16	61.36	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011123 PE=4 SV=1	[more]
A0A6P4MYQ3	1.1e-15	51.40	uncharacterized protein LOC108463487 OS=Gossypium arboreum OX=29729 GN=LOC108463...	[more]
A0A2P5WX17	1.5e-15	51.40	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G048800v1 PE...	[more]

BLAST of CcUC10G195490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19615.1	2.0e-09	53.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38370	BETA-1,4-XYLOSIDASE	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G195490.1	CcUC10G195490.1	mRNA