CcUC10G194780 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G194780
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Carbonic anhydrase
Location	CicolChr10: 19384335 .. 19384604 (-)
RNA-Seq Expression	CcUC10G194780
Synteny	CcUC10G194780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGGAAAGTTGTCGGGATGGAAGGTAAAGTCGGAAGTGAAGTTGTCGGGAGCGGAGGCAGCGTCACTCCGGTGACTGGGATGTTACCAGGGAAACTTGGAAGTGGAGGTAACTTAGGGAGAGAAGTAGGCAATGTTGGTTGTGGGAGATTTGGAATAGAGGGCATGCTTGGTACAGTCGGCAAAGGCGGTAAAGGCGGCAGTGCAGTCGGTTTAGGCAATGAAGGCAACCCTGGCATGTTCGGCGGGGCGGTTTGCAGGAGATGA

mRNA sequence

ATGGACGGGAAAGTTGTCGGGATGGAAGGTAAAGTCGGAAGTGAAGTTGTCGGGAGCGGAGGCAGCGTCACTCCGGTGACTGGGATGTTACCAGGGAAACTTGGAAGTGGAGGTAACTTAGGGAGAGAAGTAGGCAATGTTGGTTGTGGGAGATTTGGAATAGAGGGCATGCTTGGTACAGTCGGCAAAGGCGGTAAAGGCGGCAGTGCAGTCGGTTTAGGCAATGAAGGCAACCCTGGCATGTTCGGCGGGGCGGTTTGCAGGAGATGA

Coding sequence (CDS)

ATGGACGGGAAAGTTGTCGGGATGGAAGGTAAAGTCGGAAGTGAAGTTGTCGGGAGCGGAGGCAGCGTCACTCCGGTGACTGGGATGTTACCAGGGAAACTTGGAAGTGGAGGTAACTTAGGGAGAGAAGTAGGCAATGTTGGTTGTGGGAGATTTGGAATAGAGGGCATGCTTGGTACAGTCGGCAAAGGCGGTAAAGGCGGCAGTGCAGTCGGTTTAGGCAATGAAGGCAACCCTGGCATGTTCGGCGGGGCGGTTTGCAGGAGATGA

Protein sequence

MDGKVVGMEGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGMLGTVGKGGKGGSAVGLGNEGNPGMFGGAVCRR

Homology

[Close]

BLAST of CcUC10G194780 vs. NCBI nr
Match: KAG7014900.1 (hypothetical protein SDJN02_22531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1   MDGKVVGMEGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGMLGT 60
           +DGKV+G +G+     VGSGG+VTPV GMLPGKLG GG LGRE    GCGR GIEG+ GT
Sbjct: 141 IDGKVIGKDGR-----VGSGGNVTPV-GMLPGKLGRGGILGRE----GCGRLGIEGIPGT 200

Query: 61  VGKGGKGGSAVGLGNEGNPGMFG 84
           VGKGG+G      GNEGNPG  G
Sbjct: 201 VGKGGRG------GNEGNPGTLG 207

[Close]

BLAST of CcUC10G194780 vs. NCBI nr
Match: TYK29414.1 (beta carbonic anhydrase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVG+   +GK GSEVVG GG+ T + GM  G+LGSGG++   +G  G G+FG++G+L
Sbjct: 291 DGSVVGIDGRDGKFGSEVVGRGGNAT-LVGMFMGRLGSGGSV--SLGREGSGKFGMDGIL 350

Query: 62  GTVGKGGKGGSAVGLGNEGNPGMFGGAVCRR 90
           G VG GG+GG+A GLG++G  G F G VCRR
Sbjct: 351 GPVGTGGRGGTADGLGSDGIGGKF-GIVCRR 377

[Close]

BLAST of CcUC10G194780 vs. NCBI nr
Match: KAA0044283.1 (beta carbonic anhydrase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVG+   +GK GSEVVG GG+ T + GM  G+LGSGG++   +G  G G+FG++G+L
Sbjct: 295 DGSVVGIDGRDGKFGSEVVGRGGNAT-LVGMFMGRLGSGGSV--SLGREGSGKFGMDGIL 354

Query: 62  GTVGKGGKGGSAVGLGNEGNPGMFGGAVCRR 90
           G VG GG+GG+A GLG++G  G F G VCRR
Sbjct: 355 GPVGTGGRGGTADGLGSDGIGGKF-GIVCRR 381

[Close]

BLAST of CcUC10G194780 vs. NCBI nr
Match: XP_016901486.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVG+   +GK GSEVVG GG+ T + GM  G+LGSGG++   +G  G G+FG++G+L
Sbjct: 33  DGSVVGIDGRDGKFGSEVVGRGGNAT-LVGMFMGRLGSGGSV--SLGREGSGKFGMDGIL 92

Query: 62  GTVGKGGKGGSAVGLGNEGNPGMFGGAVCRR 90
           G VG GG+GG+A GLG++G  G F G VCRR
Sbjct: 93  GPVGTGGRGGTADGLGSDGIGGKF-GIVCRR 119

[Close]

BLAST of CcUC10G194780 vs. NCBI nr
Match: XP_022984242.1 (uncharacterized protein LOC111482613 [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-06
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVGM   +GKVGSE VG+GG   PV GM  G+LGSG       G+V  G  G+ G +
Sbjct: 28  DGSVVGMDGRDGKVGSEDVGNGGKAAPV-GMFIGELGSG-------GSVSLGSDGVLGPV 87

Query: 62  ---GTVGKGGKGGSAVGLGNE---GNPGMFGGAVCRR 90
              G +G  G+GGSA GLG++   G  G  GGAVCRR
Sbjct: 88  VGFGNMGNAGRGGSADGLGSDGIGGRVGSEGGAVCRR 116

[Close]

BLAST of CcUC10G194780 vs. ExPASy TrEMBL
Match: A0A5D3E0R8 (Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00040 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVG+   +GK GSEVVG GG+ T + GM  G+LGSGG++   +G  G G+FG++G+L
Sbjct: 291 DGSVVGIDGRDGKFGSEVVGRGGNAT-LVGMFMGRLGSGGSV--SLGREGSGKFGMDGIL 350

Query: 62  GTVGKGGKGGSAVGLGNEGNPGMFGGAVCRR 90
           G VG GG+GG+A GLG++G  G F G VCRR
Sbjct: 351 GPVGTGGRGGTADGLGSDGIGGKF-GIVCRR 377

[Close]

BLAST of CcUC10G194780 vs. ExPASy TrEMBL
Match: A0A5A7TL95 (Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00040 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVG+   +GK GSEVVG GG+ T + GM  G+LGSGG++   +G  G G+FG++G+L
Sbjct: 295 DGSVVGIDGRDGKFGSEVVGRGGNAT-LVGMFMGRLGSGGSV--SLGREGSGKFGMDGIL 354

Query: 62  GTVGKGGKGGSAVGLGNEGNPGMFGGAVCRR 90
           G VG GG+GG+A GLG++G  G F G VCRR
Sbjct: 355 GPVGTGGRGGTADGLGSDGIGGKF-GIVCRR 381

[Close]

BLAST of CcUC10G194780 vs. ExPASy TrEMBL
Match: A0A1S4DZT7 (uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC107991270 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVG+   +GK GSEVVG GG+ T + GM  G+LGSGG++   +G  G G+FG++G+L
Sbjct: 33  DGSVVGIDGRDGKFGSEVVGRGGNAT-LVGMFMGRLGSGGSV--SLGREGSGKFGMDGIL 92

Query: 62  GTVGKGGKGGSAVGLGNEGNPGMFGGAVCRR 90
           G VG GG+GG+A GLG++G  G F G VCRR
Sbjct: 93  GPVGTGGRGGTADGLGSDGIGGKF-GIVCRR 119

[Close]

BLAST of CcUC10G194780 vs. ExPASy TrEMBL
Match: A0A6J1J1P5 (uncharacterized protein LOC111482613 OS=Cucurbita maxima OX=3661 GN=LOC111482613 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-06
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVGM   +GKVGSE VG+GG   PV GM  G+LGSG       G+V  G  G+ G +
Sbjct: 28  DGSVVGMDGRDGKVGSEDVGNGGKAAPV-GMFIGELGSG-------GSVSLGSDGVLGPV 87

Query: 62  ---GTVGKGGKGGSAVGLGNE---GNPGMFGGAVCRR 90
              G +G  G+GGSA GLG++   G  G  GGAVCRR
Sbjct: 88  VGFGNMGNAGRGGSADGLGSDGIGGRVGSEGGAVCRR 116

[Close]

BLAST of CcUC10G194780 vs. ExPASy TrEMBL
Match: A0A6J1E4G5 (oleosin-B3 OS=Cucurbita moschata OX=3662 GN=LOC111430530 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 2   DGKVVGM---EGKVGSEVVGSGGSVTPVTGMLPGKLGSGGNLGREVGNVGCGRFGIEGML 61
           DG VVG+   +GKVGSE  G+GG   P  GM  G+LGSGG++G E   +     G     
Sbjct: 28  DGSVVGIDGRDGKVGSEDDGNGGKAAP-AGMFIGELGSGGSVGLESDGILDPVVG----F 87

Query: 62  GTVGKGGKGGSAVGLGNE---GNPGMFGGAVCRR 90
           G +G  G+GGSA GLG++   G  G  GGAVCRR
Sbjct: 88  GNMGDAGRGGSADGLGSDGIGGRVGSEGGAVCRR 116

The following BLAST results are available for this feature:

BLAST of CcUC10G194780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014900.1	1.3e-12	63.86	hypothetical protein SDJN02_22531, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK29414.1	4.0e-11	54.95	beta carbonic anhydrase 5 [Cucumis melo var. makuwa]	[more]
KAA0044283.1	4.0e-11	54.95	beta carbonic anhydrase 5 [Cucumis melo var. makuwa]	[more]
XP_016901486.1	4.0e-11	54.95	PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis me...	[more]
XP_022984242.1	8.7e-06	50.52	uncharacterized protein LOC111482613 [Cucurbita maxima]	[more]

BLAST of CcUC10G194780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G194780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0R8	2.0e-11	54.95	Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G0...	[more]
A0A5A7TL95	2.0e-11	54.95	Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00...	[more]
A0A1S4DZT7	2.0e-11	54.95	uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1J1P5	4.2e-06	50.52	uncharacterized protein LOC111482613 OS=Cucurbita maxima OX=3661 GN=LOC111482613...	[more]
A0A6J1E4G5	1.4e-04	47.87	oleosin-B3 OS=Cucurbita moschata OX=3662 GN=LOC111430530 PE=4 SV=1	[more]

BLAST of CcUC10G194780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G194780.1	CcUC10G194780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016829	lyase activity