CcUC10G193340 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G193340
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	agamous-like MADS-box protein AGL14
Location	CicolChr10: 12107074 .. 12107529 (+)
RNA-Seq Expression	CcUC10G193340
Synteny	CcUC10G193340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGAAGAGAAAGAACAGTTTGATGAAGAAGGCTTCCGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCTTCCCAATCGGAGCTGGAATTTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGATCCGCGCCTACGGGACCACCTCCTCCTGTAATTTCCAGAACCCCAAGTGTTTCAGTATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTCGTCAGAAAGTCGATGACGTTTGCCCTAAGTGGGACAAGCGGCTCGAAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATTGA

mRNA sequence

ATGGGAAGAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGAAGAGAAAGAACAGTTTGATGAAGAAGGCTTCCGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCTTCCCAATCGGAGCTGGAATTTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGATCCGCGCCTACGGGACCACCTCCTCCTGTAATTTCCAGAACCCCAAGTGTTTCAGTATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTCGTCAGAAAGTCGATGACGTTTGCCCTAAGTGGGACAAGCGGCTCGAAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATTGA

Coding sequence (CDS)

ATGGGAAGAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGAAGAGAAAGAACAGTTTGATGAAGAAGGCTTCCGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCTTCCCAATCGGAGCTGGAATTTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGATCCGCGCCTACGGGACCACCTCCTCCTGTAATTTCCAGAACCCCAAGTGTTTCAGTATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTCGTCAGAAAGTCGATGACGTTTGCCCTAAGTGGGACAAGCGGCTCGAAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATTGA

Protein sequence

MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSSQSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQKVDDVCPKWDKRLEAYVGTRIERVHGRTECEN

Homology

[Close]

BLAST of CcUC10G193340 vs. NCBI nr
Match: XP_038887059.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 6.8e-51
Identity = 107/133 (80.45%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKA ELSTLCDV+TCVL+HGPAS  TEDP S
Sbjct: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVQTCVLVHGPASLPTEDP-S 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
           QS+LEFH+WPS+RT LEAMIRAY TT SCNFQ  KCF +TD+F DRKRKIESETCKLR+K
Sbjct: 61  QSDLEFHTWPSDRTHLEAMIRAYKTTRSCNFQKCKCFGLTDYFSDRKRKIESETCKLREK 120

Query: 121 VDDVCPKWDKRLE 134
              +CPKWD+ L+
Sbjct: 121 F--MCPKWDEWLD 130

[Close]

BLAST of CcUC10G193340 vs. NCBI nr
Match: XP_038887053.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-50
Identity = 106/133 (79.70%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKA ELSTLCDV+TCVL+HGPAS  TEDP S
Sbjct: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVQTCVLVHGPASLPTEDP-S 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
           QS+ EFH+WPS+RT LEAMIRAY TT SCNFQ  KCF +TD+F DRKRKIESETCKLR+K
Sbjct: 61  QSDPEFHTWPSDRTHLEAMIRAYKTTRSCNFQKCKCFGLTDYFSDRKRKIESETCKLREK 120

Query: 121 VDDVCPKWDKRLE 134
              +CPKWD+ L+
Sbjct: 121 F--MCPKWDEWLD 130

[Close]

BLAST of CcUC10G193340 vs. NCBI nr
Match: XP_022935361.1 (agamous-like MADS-box protein AGL14 [Cucurbita moschata])

HSP 1 Score: 164.1 bits (414), Expect = 9.5e-37
Identity = 86/134 (64.18%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           M RGKLS NLI NRKSR STFK+RKNSLMKKA ELSTLCDVRTCVLI+GP  +  EDP S
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDP-S 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
            S +EFH+WPSNR+++E MI AY    +CNFQ  KCF ++D+F DRKRK+ +E CK R+K
Sbjct: 61  LSSVEFHTWPSNRSEVEHMIHAY-KNGNCNFQKRKCFDLSDYFSDRKRKLVTEMCKHREK 120

Query: 121 VDDVC-PKWDKRLE 134
           V  +  P WD+RL+
Sbjct: 121 VGKIMWPDWDERLD 132

[Close]

BLAST of CcUC10G193340 vs. NCBI nr
Match: XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 4.7e-36
Identity = 85/134 (63.43%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           M RGKLS NLI NRKSR STFK+RKNSLMKKA ELSTLCDVRTCVLI+GP  +  EDP S
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDP-S 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
            S +EFH+WPSNR+++E MI AY    +CN Q  KCF ++D+F DRKRK+ +E CK R+K
Sbjct: 61  LSSVEFHTWPSNRSEVEHMIHAY-KNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREK 120

Query: 121 VDDVC-PKWDKRLE 134
           V  +  P WD+RL+
Sbjct: 121 VGKIMWPDWDERLD 132

[Close]

BLAST of CcUC10G193340 vs. NCBI nr
Match: XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 4.7e-36
Identity = 85/134 (63.43%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           M RGKLS NLI NRKSR STFK+RKNSLMKKA ELSTLCDVRTCVLI+GP  +  EDP S
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDP-S 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
            S +EFH+WPSNR+++E MI AY    +CN Q  KCF ++D+F DRKRK+ +E CK R+K
Sbjct: 61  LSSVEFHTWPSNRSEVEHMIHAY-KNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREK 120

Query: 121 VDDVC-PKWDKRLE 134
           V  +  P WD+RL+
Sbjct: 121 VGKIMWPDWDERLD 132

[Close]

BLAST of CcUC10G193340 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-12
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 6   LSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSSQSELE 65
           + L  I N K+RI+T+KKRK SL KKA E STLC V TC++++GP + +T+   S+ E+ 
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGP-TKATDVVISEPEI- 65

Query: 66  FHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQKVDDVC 125
              WP + T + A+IR Y  T S + +     +  + F++   K      K R K ++  
Sbjct: 66  ---WPKDETKVRAIIRKYKDTVSTSCRKE---TNVETFVNDVGKGNEVVTKKRVKRENKY 125

Query: 126 PKWDKRLEAYVGTRIERVHG 146
             W+++L+       E++HG
Sbjct: 126 SSWEEKLDK---CSREQLHG 134

[Close]

BLAST of CcUC10G193340 vs. ExPASy Swiss-Prot
Match: Q9FJK3 (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.2e-07
Identity = 42/123 (34.15%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           M R K+ L  I N  SR +TFKKRK  LMKK  ELSTLC +  C +I+ P  ++ E    
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE---- 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
                   WPSN + ++ ++  + T    + Q+ K      F    K++I   T  LR++
Sbjct: 61  -------VWPSN-SGVQRVVSEFRTLPEMD-QHKKMVDQEGFL---KQRIAKATETLRRQ 107

Query: 121 VDD 124
             D
Sbjct: 121 RKD 107

[Close]

BLAST of CcUC10G193340 vs. ExPASy Swiss-Prot
Match: Q9LSB2 (Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-06
Identity = 37/124 (29.84%), Postives = 56/124 (45.16%), Query Frame = 0


Query: 16  SRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSSQSELEFHSWPSNRTD 75
           SR ++  KR+ ++ KKA ELS LCD+  CV+ +G            S  E  +WP  R  
Sbjct: 31  SRATSLIKRQQTVFKKAKELSILCDIDVCVICYG------------SNGELKTWPEEREK 90

Query: 76  LEAMIRAYGTTSSCNFQNPKCFSMTDFF----LDRKRKIESETCKLRQKVDDVCPKWDKR 135
           ++A+ R YG  S    +      + +F      D   K E +  K+R+      P WD R
Sbjct: 91  VKAIARRYGELSETK-RRKGSVDLHEFLEKMNKDDPEKEEKKKIKVRRVPKVKYPVWDPR 141

[Close]

BLAST of CcUC10G193340 vs. ExPASy Swiss-Prot
Match: Q07474 (Floral homeotic protein PMADS 2 OS=Petunia hybrida OX=4102 GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-06
Identity = 36/125 (28.80%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           MGRGK+ +  I N  +R  T+ KR+N ++KKA E++ LCD +  ++I G +         
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSG-------- 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQ- 120
               + H + S  T L  M+  Y  TS     + K  ++++     K++ ++   KLR  
Sbjct: 61  ----KMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHL 113

Query: 121 KVDDV 125
           K +D+
Sbjct: 121 KGEDI 113

[Close]

BLAST of CcUC10G193340 vs. ExPASy Swiss-Prot
Match: A2RVQ5 (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 37/90 (41.11%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
          MGRGK+++  I N  SR  TF KR+N L+KKA EL+ LCD    V+I           SS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIF----------SS 60

Query: 61 QSELEFHSWPSNRTDLEAMIRAYGTTSSCN 91
             L   S  S ++ +E    A G TSS N
Sbjct: 61 TGRLYDFSSSSMKSVIERYSDAKGETSSEN 80

[Close]

BLAST of CcUC10G193340 vs. ExPASy TrEMBL
Match: A0A6J1F4C8 (agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC111442271 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.6e-37
Identity = 86/134 (64.18%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           M RGKLS NLI NRKSR STFK+RKNSLMKKA ELSTLCDVRTCVLI+GP  +  EDP S
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDP-S 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
            S +EFH+WPSNR+++E MI AY    +CNFQ  KCF ++D+F DRKRK+ +E CK R+K
Sbjct: 61  LSSVEFHTWPSNRSEVEHMIHAY-KNGNCNFQKRKCFDLSDYFSDRKRKLVTEMCKHREK 120

Query: 121 VDDVC-PKWDKRLE 134
           V  +  P WD+RL+
Sbjct: 121 VGKIMWPDWDERLD 132

[Close]

BLAST of CcUC10G193340 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36
Identity = 85/134 (63.43%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           M RGKLS NLI NRKSR STFK+RKNSLMKKA ELSTLCDVRTCVLI+GP  +  EDP S
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDP-S 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
            S +EFH+WPSNR+++E MI AY    +CN Q  KCF ++D+F DRKRK+ +E CK R+K
Sbjct: 61  LSSVEFHTWPSNRSEVEHMIHAY-KNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREK 120

Query: 121 VDDVC-PKWDKRLE 134
           V  +  P WD+RL+
Sbjct: 121 VGKIMWPDWDERLD 132

[Close]

BLAST of CcUC10G193340 vs. ExPASy TrEMBL
Match: A0A6J1G795 (floral homeotic protein FBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111451466 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 75/135 (55.56%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           MGRGKLS+ LI N KSR +TF KRKNSLM+KA ELSTLCDVRTCV++HGP      + S 
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGP------NQSD 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSC-NFQNPKCFSMTDFFLDRKRKIESETCKLRQ 120
           QS +  H+WPS+R  +  MI +Y   S+C + +  K F++ DFF DRK+KIES+  KLR+
Sbjct: 61  QSPI--HTWPSSRDSVNDMIASY--KSNCLHKRTRKSFNLFDFFSDRKKKIESDMSKLRK 120

Query: 121 KVDDV-CPKWDKRLE 134
            V     PKWD+RLE
Sbjct: 121 DVAKARYPKWDERLE 125

[Close]

BLAST of CcUC10G193340 vs. ExPASy TrEMBL
Match: A0A6J1KY19 (MADS-box transcription factor PHERES 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499770 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 72/134 (53.73%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           MGRGKLS+ LI N KSR +TF KRKNSLM+KA ELSTLCDVRTCV++HGP S S + P  
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGP-SQSDQSP-- 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
                 H+WPS+   +  MI +Y   +  + +  K F++ DFF DRK+KIES+  KLR+ 
Sbjct: 61  -----VHTWPSSCDSVNDMIASY-KANCLHKRTRKSFNLFDFFSDRKKKIESDMSKLRKD 120

Query: 121 VDDV-CPKWDKRLE 134
           V     PKWD+RLE
Sbjct: 121 VAKARYPKWDERLE 125

[Close]

BLAST of CcUC10G193340 vs. ExPASy TrEMBL
Match: A0A6J1CQM2 (uncharacterized protein LOC111013282 OS=Momordica charantia OX=3673 GN=LOC111013282 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 74/156 (47.44%), Postives = 94/156 (60.26%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           MGRGKLSL LI + KSR +TF+KR  SLMKKA ELSTLCDVRTCVLIHGPA     D   
Sbjct: 1   MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGD--- 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
           +S +E H+WP NR ++E +IRAY  T+     + K F + DFF  R +KIE E  K  ++
Sbjct: 61  RSVVESHTWPPNREEIEGIIRAY-KTNYLRKPSMKSFGLYDFFSGRMKKIEKERAKFSEE 120

Query: 121 VDDVCPKWDKRLEAY-----------VGTRIERVHG 146
           +      WD+RL              +G++IE   G
Sbjct: 121 IK--YAGWDERLNCLSEQQLRLFMDNLGSKIEAAEG 150

[Close]

BLAST of CcUC10G193340 vs. TAIR 10
Match: AT5G55690.1 (MADS-box transcription factor family protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-13
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           MGR  + +  I N K+RI+T+KKRK  L KKASE STLC V TCV+++GP+ +  E    
Sbjct: 1   MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDE---- 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
              +E   WP + + +  ++  Y  T+S +    K +++ +       K+E  T   +  
Sbjct: 61  -MVMEPELWPKDGSKVREILTKYRDTASSSC--TKTYTVQECLEKNNTKVEKPTIATKY- 120

Query: 121 VDDVCPKWDKRLE 134
                P WDK+L+
Sbjct: 121 -----PTWDKKLD 120

[Close]

BLAST of CcUC10G193340 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-13
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 6   LSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSSQSELE 65
           + L  I N K+RI+T+KKRK SL KKA E STLC V TC++++GP + +T+   S+ E+ 
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGP-TKATDVVISEPEI- 65

Query: 66  FHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQKVDDVC 125
              WP + T + A+IR Y  T S + +     +  + F++   K      K R K ++  
Sbjct: 66  ---WPKDETKVRAIIRKYKDTVSTSCRKE---TNVETFVNDVGKGNEVVTKKRVKRENKY 125

Query: 126 PKWDKRLEAYVGTRIERVHG 146
             W+++L+       E++HG
Sbjct: 126 SSWEEKLDK---CSREQLHG 134

[Close]

BLAST of CcUC10G193340 vs. TAIR 10
Match: AT5G48670.1 (AGAMOUS-like 80 )

HSP 1 Score: 55.5 bits (132), Expect = 4.4e-08
Identity = 42/123 (34.15%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 1   MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSS 60
           M R K+ L  I N  SR +TFKKRK  LMKK  ELSTLC +  C +I+ P  ++ E    
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE---- 60

Query: 61  QSELEFHSWPSNRTDLEAMIRAYGTTSSCNFQNPKCFSMTDFFLDRKRKIESETCKLRQK 120
                   WPSN + ++ ++  + T    + Q+ K      F    K++I   T  LR++
Sbjct: 61  -------VWPSN-SGVQRVVSEFRTLPEMD-QHKKMVDQEGFL---KQRIAKATETLRRQ 107

Query: 121 VDD 124
             D
Sbjct: 121 RKD 107

[Close]

BLAST of CcUC10G193340 vs. TAIR 10
Match: AT5G26580.1 (AGAMOUS-like-34 )

HSP 1 Score: 54.7 bits (130), Expect = 7.6e-08
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGP 51
          MG  K+ L+LI N  SR ++F KRKN +MKK  ELSTLC V+ C LI+ P
Sbjct: 1  MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSP 50

[Close]

BLAST of CcUC10G193340 vs. TAIR 10
Match: AT3G18650.1 (AGAMOUS-like 103 )

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-07
Identity = 37/124 (29.84%), Postives = 56/124 (45.16%), Query Frame = 0


Query: 16  SRISTFKKRKNSLMKKASELSTLCDVRTCVLIHGPASSSTEDPSSQSELEFHSWPSNRTD 75
           SR ++  KR+ ++ KKA ELS LCD+  CV+ +G            S  E  +WP  R  
Sbjct: 31  SRATSLIKRQQTVFKKAKELSILCDIDVCVICYG------------SNGELKTWPEEREK 90

Query: 76  LEAMIRAYGTTSSCNFQNPKCFSMTDFF----LDRKRKIESETCKLRQKVDDVCPKWDKR 135
           ++A+ R YG  S    +      + +F      D   K E +  K+R+      P WD R
Sbjct: 91  VKAIARRYGELSETK-RRKGSVDLHEFLEKMNKDDPEKEEKKKIKVRRVPKVKYPVWDPR 141

The following BLAST results are available for this feature:

BLAST of CcUC10G193340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887059.1	6.8e-51	80.45	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_038887053.1	4.4e-50	79.70	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_022935361.1	9.5e-37	64.18	agamous-like MADS-box protein AGL14 [Cucurbita moschata]	[more]
XP_023528957.1	4.7e-36	63.43	agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo]	[more]
XP_022983430.1	4.7e-36	63.43	agamous-like MADS-box protein AGL14 [Cucurbita maxima]	[more]

BLAST of CcUC10G193340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIM0	8.4e-12	34.29	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]
Q9FJK3	6.2e-07	34.15	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=...	[more]
Q9LSB2	4.0e-06	29.84	Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 P...	[more]
Q07474	5.3e-06	28.80	Floral homeotic protein PMADS 2 OS=Petunia hybrida OX=4102 GN=PMADS2 PE=2 SV=1	[more]
A2RVQ5	1.2e-05	41.11	Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=...	[more]

BLAST of CcUC10G193340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4C8	4.6e-37	64.18	agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC11144227...	[more]
A0A6J1J5U6	2.3e-36	63.43	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]
A0A6J1G795	2.8e-26	55.56	floral homeotic protein FBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111451466 ...	[more]
A0A6J1KY19	4.0e-25	53.73	MADS-box transcription factor PHERES 2-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1CQM2	1.2e-24	47.44	uncharacterized protein LOC111013282 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of CcUC10G193340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55690.1	2.7e-13	33.83	MADS-box transcription factor family protein	[more]
AT5G58890.1	6.0e-13	34.29	AGAMOUS-like 82	[more]
AT5G48670.1	4.4e-08	34.15	AGAMOUS-like 80	[more]
AT5G26580.1	7.6e-08	56.00	AGAMOUS-like-34	[more]
AT3G18650.1	2.9e-07	29.84	AGAMOUS-like 103	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 40.51 coord: 23..38 score: 65.74 coord: 38..59 score: 23.3
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.7E-16 score: 70.8
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..51 e-value: 8.0E-16 score: 57.3
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..47 score: 18.067612
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..115 e-value: 1.5E-15 score: 59.0
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..61
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 3..141
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..141
None	No IPR available	CDD	cd00120	MADS	coord: 2..60 e-value: 2.9113E-20 score: 76.7838

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G193340.1	CcUC10G193340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding