CcUC10G192440 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G192440
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 9484978 .. 9486152 (-)
RNA-Seq Expression	CcUC10G192440
Synteny	CcUC10G192440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTAATTGTTAATTTTTGCAGTGAAGCCTACTCGATTCTCCCTCACTTGAATTCAATATGAAAAGGTTTCTCGATTCTGCCAAAAATATATATATATAGTAATTAAAGAATATAACCAAAATAAGCACTTACAATGTTTTATCGAAAATAGTAAGTTTTTGGAGATGTTATTGATGAAAAACCATTAGAAGGAAAGAACTGAAAATATTAAAAAAAAAAAAAAATAATAATAATAATAAACACACATAATGGTTGTTACCTATGTCTTAAGATAGTGGATGGATTGCCCATAAAATGTCTAATCTACCCTTCCACACTAATTAAATACATACAAAAGAGAGTTTTTTAAAAAAAAAAAAAAAAAATTCCAGCATTTTTAGAAGATAGGGATATTTTGTGATTGGTGCGACGATCTTTTCATAATCAATGTAAATGAAATGAATTTTTGAGTGAATTTGGACTTGCGAAATAAAGGAAAAAAAAAAAGATAAAGATAAGAACAAGACAGAGTGGACTTGATTTCAAATAAGTCCAGGTGTGAACTAATCGTTGATCTAATAAGACTATCCTAACTTGTTTGTGTTTAGGTAAAACTCATATCCTAAGTATTAAAATAAACTCTAGGTCAATTTCCCTATAAATATATACATCCCAGCAGGCCTTTTCTTTTGCAATACTGAAAAAGGTCTCTCATGGCCAATTTCTTATTACAGCGTTCTCGACCATAGAATTCGGCCTGAGGGGTCAACCCGGTGGCTTCTATGAGGAAGGCGGTGCAAAGGAGGCTCGAGGGCTTGTTAAGGAAGGCGGCAAGGGCCGACGAAGGGGGGAAAACGAAAGGCGTTTTCTGGTCTATATGAGGTAATTGCAACTTTTGATTGGGATGGAGATGAATTCGATCAAACCACCACCTACGAAGAACTTGAGATCTAACACAATCTTGACCCGAGGAAAAGCTAAAGGCATTGGAAAGCAAGTGATCATAATAGGTCATGATCTGACTCGACTACTTGAGACTCTAGACTAGCAGAACCCTTTTGCAATGGTTCAAACGGAACCAATAGTGTGTGATCCTGCCAAAGAAAAAGCCCTCTCAATTAAGAAAGTGGGAGAAATAGAGCCTCATGTTCAAAGACTAAAGGAGAGGTCGGTTTTAGGTGGTAATAGTTAG

mRNA sequence

ATGACGGGTCAACCCGGTGGCTTCTATGAGGAAGGCGGTGCAAAGGAGGCTCGAGGGCTTGTTAAGGAAGGCGGCAAGGGCCGACGAAGGGGGGAAAACGAAAGGCGTTTTCTGAACCCTTTTGCAATGGTTCAAACGGAACCAATAGTGTGTGATCCTGCCAAAGAAAAAGCCCTCTCAATTAAGAAAGTGGGAGAAATAGAGCCTCATGTTCAAAGACTAAAGGAGAGGTCGGTTTTAGGTGGTAATAGTTAG

Coding sequence (CDS)

ATGACGGGTCAACCCGGTGGCTTCTATGAGGAAGGCGGTGCAAAGGAGGCTCGAGGGCTTGTTAAGGAAGGCGGCAAGGGCCGACGAAGGGGGGAAAACGAAAGGCGTTTTCTGAACCCTTTTGCAATGGTTCAAACGGAACCAATAGTGTGTGATCCTGCCAAAGAAAAAGCCCTCTCAATTAAGAAAGTGGGAGAAATAGAGCCTCATGTTCAAAGACTAAAGGAGAGGTCGGTTTTAGGTGGTAATAGTTAG

Protein sequence

MTGQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFLNPFAMVQTEPIVCDPAKEKALSIKKVGEIEPHVQRLKERSVLGGNS

Homology

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BLAST of CcUC10G192440 vs. NCBI nr
Match: YP_009526583.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54342.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1   MTGQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFLNP 41
           + GQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFL P
Sbjct: 152 LRGQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFLVP 191

[Close]

BLAST of CcUC10G192440 vs. NCBI nr
Match: KAE8681803.1 (Detected protein of unknown function [Hibiscus syriacus])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 3   GQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFL 39
           GQPGGFYEEGGAKEARGL+KEGGKGRRR +NERRFL
Sbjct: 98  GQPGGFYEEGGAKEARGLIKEGGKGRRREQNERRFL 133

[Close]

BLAST of CcUC10G192440 vs. NCBI nr
Match: KAE8646988.1 (hypothetical protein Csa_023852, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MTGQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFLNP 41
          + GQPG FYEEGGAKEARGLVKEGGK RRRGE ER FL P
Sbjct: 8  LRGQPGSFYEEGGAKEARGLVKEGGKVRRRGEKERPFLVP 47

[Close]

BLAST of CcUC10G192440 vs. ExPASy TrEMBL
Match: A0A385G2B7 (Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp24 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1   MTGQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFLNP 41
           + GQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFL P
Sbjct: 152 LRGQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFLVP 191

[Close]

BLAST of CcUC10G192440 vs. ExPASy TrEMBL
Match: A0A1J3J606 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR143_c9_g1_i1_g.299 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.6e-09
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1  MTGQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFLNP 41
          + GQPGGFYEEGGAK+ARGLVKE GKGRRRGENER FL P
Sbjct: 2  LRGQPGGFYEEGGAKKARGLVKEDGKGRRRGENERPFLVP 41

[Close]

BLAST of CcUC10G192440 vs. ExPASy TrEMBL
Match: A0A6A2YR19 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111308pilonHSYRG00021 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 3   GQPGGFYEEGGAKEARGLVKEGGKGRRRGENERRFL 39
           GQPGGFYEEGGAKEARGL+KEGGKGRRR +NERRFL
Sbjct: 98  GQPGGFYEEGGAKEARGLIKEGGKGRRREQNERRFL 133

The following BLAST results are available for this feature:

BLAST of CcUC10G192440 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009526583.1	1.4e-10	92.50	hypothetical protein [Ammopiptanthus mongolicus] >AXV54342.1 hypothetical protei...	[more]
KAE8681803.1	2.3e-08	91.67	Detected protein of unknown function [Hibiscus syriacus]	[more]
KAE8646988.1	2.6e-07	82.50	hypothetical protein Csa_023852, partial [Cucumis sativus]	[more]

BLAST of CcUC10G192440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G192440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A385G2B7	7.0e-11	92.50	Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp24 PE=4 S...	[more]
A0A1J3J606	8.6e-09	85.00	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR143...	[more]
A0A6A2YR19	1.1e-08	91.67	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111308pilon...	[more]

BLAST of CcUC10G192440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G192440.1	CcUC10G192440.1	mRNA