CcUC10G188790 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G188790
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	CicolChr10: 3338177 .. 3338389 (+)
RNA-Seq Expression	CcUC10G188790
Synteny	CcUC10G188790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCTAATCTGTCTTGGAAGATTTCCAATGGCGAGAAGGCCCTATTCTGGTATCACAATTGGAATCCCAATGGGCCCCCTTTCACAGCTGCCAACAGACTTTTTACATTATCTGTGAACCCCTTGATGTCAGTTAAAGAAGCGTGGGATCCATCTCTTTTGACCTGGAATATGCAAGCTCGCCGGCCCAACGTGAAACCGACGCTTTAA

mRNA sequence

ATGCTTGCTAATCTGTCTTGGAAGATTTCCAATGGCGAGAAGGCCCTATTCTGGTATCACAATTGGAATCCCAATGGGCCCCCTTTCACAGCTGCCAACAGACTTTTTACATTATCTGTGAACCCCTTGATGTCAGTTAAAGAAGCGTGGGATCCATCTCTTTTGACCTGGAATATGCAAGCTCGCCGGCCCAACGTGAAACCGACGCTTTAA

Coding sequence (CDS)

ATGCTTGCTAATCTGTCTTGGAAGATTTCCAATGGCGAGAAGGCCCTATTCTGGTATCACAATTGGAATCCCAATGGGCCCCCTTTCACAGCTGCCAACAGACTTTTTACATTATCTGTGAACCCCTTGATGTCAGTTAAAGAAGCGTGGGATCCATCTCTTTTGACCTGGAATATGCAAGCTCGCCGGCCCAACGTGAAACCGACGCTTTAA

Protein sequence

MLANLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARRPNVKPTL

Homology

[Close]

BLAST of CcUC10G188790 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 4   NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
           N+ WK+++GE   FW  NWN N P   A  RLF LS N   SVK+ W+PSL  WN+   R
Sbjct: 652 NIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNR 711

Query: 64  P 65
           P
Sbjct: 712 P 712

[Close]

BLAST of CcUC10G188790 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-09
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 4   NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
           N+ WK+++GE   FW  NWN N P      RLF LS N   SVK+ W+PSL  WN+   R
Sbjct: 746 NIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNR 805

Query: 64  P 65
           P
Sbjct: 806 P 806

[Close]

BLAST of CcUC10G188790 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 4   NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
           N+SWK+++GE   FW  NWN N P   A  RLF LS N   SVKE W+PS   W++   R
Sbjct: 854 NISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINR 913

Query: 64  P 65
           P
Sbjct: 914 P 914

[Close]

BLAST of CcUC10G188790 vs. NCBI nr
Match: TYK05690.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 4    NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
            N  W ++NG++  FW+ NW+P G  FTA +RLF LS++   S+K+ W+ +   W +  RR
Sbjct: 1085 NQGWDLNNGDQISFWFSNWSPEGCLFTAYSRLFALSIDKESSIKDVWNSNNNQWEITFRR 1144

[Close]

BLAST of CcUC10G188790 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 7   WKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARRP 65
           WK+++GE   FW  NWN N P      RLF LS N   SVK+ W+PS   W++   RP
Sbjct: 200 WKVNDGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRP 257

[Close]

BLAST of CcUC10G188790 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 4   NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
           N+ WK+++GE   FW  NWN N P   A  RLF LS N   SVK+ W+PSL  WN+   R
Sbjct: 652 NIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNR 711

Query: 64  P 65
           P
Sbjct: 712 P 712

[Close]

BLAST of CcUC10G188790 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 4   NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
           N+ WK+++GE   FW  NWN N P      RLF LS N   SVK+ W+PSL  WN+   R
Sbjct: 746 NIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNR 805

Query: 64  P 65
           P
Sbjct: 806 P 806

[Close]

BLAST of CcUC10G188790 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 4   NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
           N+SWK+++GE   FW  NWN N P   A  RLF LS N   SVKE W+PS   W++   R
Sbjct: 854 NISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINR 913

Query: 64  P 65
           P
Sbjct: 914 P 914

[Close]

BLAST of CcUC10G188790 vs. ExPASy TrEMBL
Match: A0A5D3C2W8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001680 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.7e-07
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 4    NLSWKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARR 63
            N  W ++NG++  FW+ NW+P G  FTA +RLF LS++   S+K+ W+ +   W +  RR
Sbjct: 1085 NQGWDLNNGDQISFWFSNWSPEGCLFTAYSRLFALSIDKESSIKDVWNSNNNQWEITFRR 1144

[Close]

BLAST of CcUC10G188790 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 7   WKISNGEKALFWYHNWNPNGPPFTAANRLFTLSVNPLMSVKEAWDPSLLTWNMQARRP 65
           WK+++GE   FW  NWN N P      RLF LS N   SVK+ W+PS   W++   RP
Sbjct: 200 WKVNDGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRP 257

The following BLAST results are available for this feature:

BLAST of CcUC10G188790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	3.0e-09	49.18	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	8.6e-09	47.54	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	1.5e-08	49.18	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
TYK05690.1	1.8e-06	40.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	2.4e-06	44.83	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of CcUC10G188790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G188790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR15	1.4e-09	49.18	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	4.2e-09	47.54	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	7.1e-09	49.18	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C2W8	8.7e-07	40.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	1.1e-06	44.83	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CcUC10G188790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G188790.1	CcUC10G188790.1	mRNA