CcUC10G188160 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G188160
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	E3 ubiquitin-protein ligase RNF34
Location	CicolChr10: 2333196 .. 2334856 (+)
RNA-Seq Expression	CcUC10G188160
Synteny	CcUC10G188160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCATGCTAGCAAAGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTCTTTAGGTATTTTTTTATGGTCAAATTTTCTTCGTTTTAGCCTATATTGAATGTCAGGATTAGTAATTGTTTATCAACTAAACTTTGCCTATATCAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGGAGCCCTGCCGGAATGAAAAGCCCATTACAGAACCAGCTTCAAAAAGCCTAGGTACAACATACTTTCGTTTCGACTTTTTTATCTTAGTTTTTTAATTTCTATTATTTGCTGCTTCTTTTAGTTTGAAATATGGACACGAGCTTAGAATCTTTACTGCATTGACATTTATGAGGTTAATTGCGGACATGGGTACACCCGTTAAATCATAATTTCAACTGTCTTCCCTAGTTTTTTGTTTAATATTGGCTAGATTGTAAAGTTTAGGGAATGATGCTGGTTGCAAAAGCCATACATGGACATGTATGCTCGATGAACCATCGTGGGTTGGCTTAGTGGCAGTAGGAACATAAAAGAAAAAGAAAAAAAAAATGCATGTATCATGATAGCTGGTTAGGAAATACTCGCTGGTTGATACCCTTATCTTGGTTTTCTCGTCATATGGAGATATATTGGTTTTTTTGTGCCAATTTTTTTAGCTTTTGCAAATTATGTTTTGTTTTTGATGAGATGAATTTTCGGTTGCTGGTGTTTAAAACTTTGAGTATTGTGCAGTTTGAAGTAACATATAGTGGTTGGAAATTTCTTGACTATATAACATTGTAGTGTTGTTGGGTTACTACCTATTGCCAACTTTATGGCACTGTTATGAGAAGTAATGTAGAGGTTGTTTGTAGCACTGTTTCCAACTATAGAACATCTTGCACTTCAGCTGGAAACTTACCTCCCTCTTTCATGTCATTTGAGTACTACAATTGGAACATAGAACATTCAGCATCAAATTTGAAAATATTATAGTGCTTGCTTCTTCTTAGGAGTTGCAAACTTTGCTCACTTCCTTTTCACTTATTGTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGTTTGCATATTGACCAATGACTAAAATTTAAATCTGTGTTTTCATTGTTCCTGATCTATACATGATTGTCAATTGTCATAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGCAAGTCACTTTTCCTTGTAATGTTGCATCGTGGATGTTGTAGCTTGGTTTTTCATCGTTCAGAATGTCGTGATTTGATCTTAAACAGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATACTGAAGAGAGTAGCCATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAAATCGTCGTTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA

mRNA sequence

ATGCGGCATGCTAGCAAAGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTCTTTAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGGAGCCCTGCCGGAATGAAAAGCCCATTACAGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATACTGAAGAGAGTAGCCATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAAATCGTCGTTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA

Coding sequence (CDS)

ATGCGGCATGCTAGCAAAGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTCTTTAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGGAGCCCTGCCGGAATGAAAAGCCCATTACAGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATACTGAAGAGAGTAGCCATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAAATCGTCGTTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA

Protein sequence

MRHASKDLLYLERKDLSSSSLESSLLVCKKNSEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKLKKRPKILELS

Homology

[Close]

BLAST of CcUC10G188160 vs. NCBI nr
Match: XP_038903017.1 (uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 uncharacterized protein LOC120089721 [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 3.7e-81
Identity = 183/203 (90.15%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRH SKDLLYLERKDLSSSSLESSLLVCKKNS   EP RNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRH-SKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPRRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMDAK+NAEKYDIE LDGNES+VIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDAKDNAEKYDIEALDGNESKVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTC-SSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNSRK 180
           GNQPVIPLTC SSSES++EESS DSIT ++NNDDNEKSDDQNTDHSN+SS KLKRSNSRK
Sbjct: 121 GNQPVIPLTCSSSSESESEESSDDSITSNDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRK 180

Query: 181 TSCRSKSKGKGKLKKRPKILELS 200
           TSCRSKSKGK K +KRPKILELS
Sbjct: 181 TSCRSKSKGKSKSEKRPKILELS 202

[Close]

BLAST of CcUC10G188160 vs. NCBI nr
Match: XP_008448773.1 (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa] >TYK12053.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa])

HSP 1 Score: 308.5 bits (789), Expect = 4.1e-80
Identity = 176/202 (87.13%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL+LERKDLS+SSLESSLLVCKKNS   EPCRNEKPITEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENA+KYDIE LDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNSRKT 180
           GN PVIPLTCSSSES++EESS DSIT D++N+DNEKSDDQNTD SN+ S KLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 200
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CcUC10G188160 vs. NCBI nr
Match: XP_004147238.2 (uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 9.1e-80
Identity = 177/202 (87.62%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRH SKDLLYLERKDLSSSSLESSLLVCKKNS   +P RNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 121 GNQPVIPLTCSSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNSRKT 180
           GN PVIPLTCSSSES++EESS DSIT D++NDDNEKSDDQ TD SN+ S KLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 200
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CcUC10G188160 vs. NCBI nr
Match: XP_011650372.1 (uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hypothetical protein Csa_010190 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 5.0e-78
Identity = 177/206 (85.92%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSL----ESSLLVCKKNS---EPCRNEKPITEPASKSLVLGR 60
           MRH SKDLLYLERKDLSSSSL    ESSLLVCKKNS   +P RNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAE 120
           VKDFLGVISEANKKLQMD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNQPVIPLTCSSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSN 180
           SAIIGN PVIPLTCSSSES++EESS DSIT D++NDDNEKSDDQ TD SN+ S KLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKLKKRPKILELS 200
           SRKTSCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206

[Close]

BLAST of CcUC10G188160 vs. NCBI nr
Match: XP_023005549.1 (uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 2.9e-73
Identity = 167/206 (81.07%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL LERKDL SSSLESSLLVCKKNS   EPCRNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+DAK++AEKYDIE L+GNESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTC----SSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSN 180
           GNQPVIPL C    SSSES++EESS DSIT DNN++DNEKSD QNTD  N+ S KLKRS 
Sbjct: 121 GNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSK 180

Query: 181 SRKTSCRSKSKGKGKLKKRPKILELS 200
           SR+ +CRS+S+ KGK  KRPKILELS
Sbjct: 181 SRRANCRSESREKGKSNKRPKILELS 206

[Close]

BLAST of CcUC10G188160 vs. ExPASy TrEMBL
Match: A0A5D3CJH5 (E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00670 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.0e-80
Identity = 176/202 (87.13%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL+LERKDLS+SSLESSLLVCKKNS   EPCRNEKPITEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENA+KYDIE LDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNSRKT 180
           GN PVIPLTCSSSES++EESS DSIT D++N+DNEKSDDQNTD SN+ S KLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 200
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CcUC10G188160 vs. ExPASy TrEMBL
Match: A0A1S3BJW4 (uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.0e-80
Identity = 176/202 (87.13%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL+LERKDLS+SSLESSLLVCKKNS   EPCRNEKPITEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENA+KYDIE LDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNSRKT 180
           GN PVIPLTCSSSES++EESS DSIT D++N+DNEKSDDQNTD SN+ S KLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 200
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CcUC10G188160 vs. ExPASy TrEMBL
Match: A0A0A0L448 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.4e-80
Identity = 177/202 (87.62%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRH SKDLLYLERKDLSSSSLESSLLVCKKNS   +P RNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 121 GNQPVIPLTCSSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNSRKT 180
           GN PVIPLTCSSSES++EESS DSIT D++NDDNEKSDDQ TD SN+ S KLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 200
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of CcUC10G188160 vs. ExPASy TrEMBL
Match: A0A6J1KZJ8 (uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498503 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73
Identity = 167/206 (81.07%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL LERKDL SSSLESSLLVCKKNS   EPCRNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+DAK++AEKYDIE L+GNESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTC----SSSESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSN 180
           GNQPVIPL C    SSSES++EESS DSIT DNN++DNEKSD QNTD  N+ S KLKRS 
Sbjct: 121 GNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSK 180

Query: 181 SRKTSCRSKSKGKGKLKKRPKILELS 200
           SR+ +CRS+S+ KGK  KRPKILELS
Sbjct: 181 SRRANCRSESREKGKSNKRPKILELS 206

[Close]

BLAST of CcUC10G188160 vs. ExPASy TrEMBL
Match: A0A6J1F913 (uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443185 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.0e-73
Identity = 167/205 (81.46%), Postives = 180/205 (87.80%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL LERKDL SSS ESSLLVCKKNS   EPCRNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+DAK++AEKYDIE L+G+ESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSS---ESDTEESSHDSITGDNNNDDNEKSDDQNTDHSNKSSFKLKRSNS 180
           GNQPVI L CSSS   ES++EESS DSIT DNN+DDNEKSD+QNTD  N+ S KLKR  S
Sbjct: 121 GNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKS 180

Query: 181 RKTSCRSKSKGKGKLKKRPKILELS 200
           RKT+CRS+SK KGK  KRPKILELS
Sbjct: 181 RKTNCRSESKEKGKSNKRPKILELS 205

[Close]

BLAST of CcUC10G188160 vs. TAIR 10
Match: AT1G71430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 76/145 (52.41%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 6   KDLLYLERKDLSSSS-LESSLLVC------KKNSEPCRNEKPITEPASKSLVLGRVKDFL 65
           KDLL LE K+ SSSS ++S+LL+C      KK  E     KP   P  KS +LG++K FL
Sbjct: 8   KDLLKLELKNPSSSSAMDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKLKGFL 67

Query: 66  GVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIG 125
           GV++EANKK    ++ N E Y+IE L GNESE+IE+DLMLG+ADL+TPEAV+AAE+AI G
Sbjct: 68  GVMAEANKK----SEANPEAYNIEALTGNESELIEMDLMLGVADLNTPEAVSAAEAAIAG 127

Query: 126 NQPVIPLTCSSS--ESDTEESSHDS 142
             P      SSS  ESD+E    +S
Sbjct: 128 IGPAAESGDSSSDDESDSESEGEES 148

The following BLAST results are available for this feature:

BLAST of CcUC10G188160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903017.1	3.7e-81	90.15	uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 unchara...	[more]
XP_008448773.1	4.1e-80	87.13	PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ...	[more]
XP_004147238.2	9.1e-80	87.62	uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]	[more]
XP_011650372.1	5.0e-78	85.92	uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hy...	[more]
XP_023005549.1	2.9e-73	81.07	uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]	[more]

BLAST of CcUC10G188160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G188160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJH5	2.0e-80	87.13	E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BJW4	2.0e-80	87.13	uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=...	[more]
A0A0A0L448	4.4e-80	87.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1	[more]
A0A6J1KZJ8	1.4e-73	81.07	uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F913	4.0e-73	81.46	uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CcUC10G188160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71430.1	1.2e-24	52.41	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027921	NOP protein chaperone 1	PFAM	PF15370	DUF4598	coord: 51..198 e-value: 9.8E-16 score: 58.2
IPR027921	NOP protein chaperone 1	PANTHER	PTHR28674	SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED	coord: 2..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G188160.1	CcUC10G188160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000492	box C/D snoRNP assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0062064	box C/D snoRNP complex binding