CcUC10G187560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G187560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	glycine-rich cell wall structural protein 1.8-like
Location	CicolChr10: 1570647 .. 1570871 (+)
RNA-Seq Expression	CcUC10G187560
Synteny	CcUC10G187560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCCTTAGAGGGTTGTGCCTGGCCTTTCTTCTCGTTCTAGGGTTAAGTCTAGCTCCCGCGGCCAGAACTCTTCTTGATTATGATCCACGTACACTACGCTATGATTATGATCGCCCTAATCCAAGAGTAGGGTACGATCCTAGTCATCGCGATGAATCCTATGGTGGAAGTTCTAGTAGAGGACAGGAAATTGGAGACTCTGCTCTTGGAGGTTCTTGA

mRNA sequence

ATGGCTATCCTTAGAGGGTTGTGCCTGGCCTTTCTTCTCGTTCTAGGGTTAAGTCTAGCTCCCGCGGCCAGAACTCTTCTTGATTATGATCCACGTACACTACGCTATGATTATGATCGCCCTAATCCAAGAGTAGGGTACGATCCTAGTCATCGCGATGAATCCTATGGTGGAAGTTCTAGTAGAGGACAGGAAATTGGAGACTCTGCTCTTGGAGGTTCTTGA

Coding sequence (CDS)

ATGGCTATCCTTAGAGGGTTGTGCCTGGCCTTTCTTCTCGTTCTAGGGTTAAGTCTAGCTCCCGCGGCCAGAACTCTTCTTGATTATGATCCACGTACACTACGCTATGATTATGATCGCCCTAATCCAAGAGTAGGGTACGATCCTAGTCATCGCGATGAATCCTATGGTGGAAGTTCTAGTAGAGGACAGGAAATTGGAGACTCTGCTCTTGGAGGTTCTTGA

Protein sequence

MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDESYGGSSSRGQEIGDSALGGS

Homology

[Close]

BLAST of CcUC10G187560 vs. NCBI nr
Match: XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KAA0053039.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa] >TYK11494.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 4.7e-21
Identity = 61/78 (78.21%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MAILR LCLAFLL +GL LA A RTLLDYDPRT  Y YDRP+PRVGYDP HRDES    Y
Sbjct: 1  MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSSRG  IGDSALGGS
Sbjct: 61 GGSSSRGHGIGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. NCBI nr
Match: KAE8650024.1 (hypothetical protein Csa_011560 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 60/78 (76.92%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MAILR LCLAFLL + L LA A RTLLDYDPRTL+Y YDRP+PRVGYDP H DES    Y
Sbjct: 16 MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 75

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSSRG  IGDSALGGS
Sbjct: 76 GGSSSRGHGIGDSALGGS 93

[Close]

BLAST of CcUC10G187560 vs. NCBI nr
Match: XP_011652712.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 60/78 (76.92%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MAILR LCLAFLL + L LA A RTLLDYDPRTL+Y YDRP+PRVGYDP H DES    Y
Sbjct: 1  MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSSRG  IGDSALGGS
Sbjct: 61 GGSSSRGHGIGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. NCBI nr
Match: XP_031739354.1 (glycine-rich cell wall structural protein 1.8 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 6.7e-20
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MAI R LC+ FLL +GL LA AARTLLDYDPR  RYDYDRP PRVGYDPSHRD+S    Y
Sbjct: 1  MAISRVLCIGFLLFVGLGLASAARTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNVY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSSRG   GDSALGGS
Sbjct: 61 GGSSSRGYGAGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. NCBI nr
Match: XP_008448676.1 (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo] >XP_008448677.1 PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MA+ RGL L+FLL++GL LA AARTLLDYDPRT  Y YDRP PRVGYDPSHRDES    Y
Sbjct: 1  MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSS+G  IGDSALGGS
Sbjct: 61 GGSSSKGHGIGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. ExPASy TrEMBL
Match: A0A5A7UHU2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001580 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 61/78 (78.21%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MAILR LCLAFLL +GL LA A RTLLDYDPRT  Y YDRP+PRVGYDP HRDES    Y
Sbjct: 1  MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSSRG  IGDSALGGS
Sbjct: 61 GGSSSRGHGIGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. ExPASy TrEMBL
Match: A0A1S3BMC4 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 61/78 (78.21%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MAILR LCLAFLL +GL LA A RTLLDYDPRT  Y YDRP+PRVGYDP HRDES    Y
Sbjct: 1  MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSSRG  IGDSALGGS
Sbjct: 61 GGSSSRGHGIGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. ExPASy TrEMBL
Match: A0A0A0L1V3 (Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 60/78 (76.92%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MAILR LCLAFLL + L LA A RTLLDYDPRTL+Y YDRP+PRVGYDP H DES    Y
Sbjct: 1  MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSSRG  IGDSALGGS
Sbjct: 61 GGSSSRGHGIGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. ExPASy TrEMBL
Match: A0A1S3BL53 (glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490776 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-20
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MA+ RGL L+FLL++GL LA AARTLLDYDPRT  Y YDRP PRVGYDPSHRDES    Y
Sbjct: 1  MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSS+G  IGDSALGGS
Sbjct: 61 GGSSSKGHGIGDSALGGS 78

[Close]

BLAST of CcUC10G187560 vs. ExPASy TrEMBL
Match: A0A5A7UCW7 (Glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001570 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-20
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MAILRGLCLAFLLVLGLSLAPAARTLLDYDPRTLRYDYDRPNPRVGYDPSHRDES----Y 60
          MA+ RGL L+FLL++GL LA AARTLLDYDPRT  Y YDRP PRVGYDPSHRDES    Y
Sbjct: 1  MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 61 GGSSSRGQEIGDSALGGS 75
          GGSSS+G  IGDSALGGS
Sbjct: 61 GGSSSKGHGIGDSALGGS 78

The following BLAST results are available for this feature:

BLAST of CcUC10G187560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449165.1	4.7e-21	78.21	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KA...	[more]
KAE8650024.1	4.0e-20	76.92	hypothetical protein Csa_011560 [Cucumis sativus]	[more]
XP_011652712.1	4.0e-20	76.92	glycine-rich cell wall structural protein 2 [Cucumis sativus]	[more]
XP_031739354.1	6.7e-20	75.64	glycine-rich cell wall structural protein 1.8 [Cucumis sativus]	[more]
XP_008448676.1	1.2e-19	75.64	PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis ...	[more]

BLAST of CcUC10G187560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G187560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHU2	2.3e-21	78.21	Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BMC4	2.3e-21	78.21	glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0L1V3	1.9e-20	76.92	Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1	[more]
A0A1S3BL53	5.6e-20	75.64	glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo OX=3...	[more]
A0A5A7UCW7	5.6e-20	75.64	Glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo var....	[more]

BLAST of CcUC10G187560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G187560.1	CcUC10G187560.1	mRNA