CcUC10G187000 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G187000
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr10: 993408 .. 994376 (+)
RNA-Seq ExpressionCcUC10G187000
SyntenyCcUC10G187000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGGCTAATTTCTGGCCCTCGAAATGCCTTCATCTGCAACAAAGGCTAGATCATGAAAGCGCCATTCCAACAGCTTCATATTCGAATATAGAAACCCTTGTTATTGGTCATTTTCATGTCGTCATCACGATCTGGATCTATCTCGTGAGTGTTCTCAATTTCTTCAGTATACTTTTTTTTTTATTTTTTATTTTTTATTTTTATTTTTATTGTATTGATTGAATAAGTCCGCTCTGCTTGTTTGATTGAGGGATTAAATATTGTAGATATAGCTTTTCAATTACAACTACGCTCAATAGGGAAGAAATTGCGTCTTATAATATATGCAAAATGACAAATTATGACATTGGAATCTTCAACAAAAACCAAATATTAATTGATGCCTAAATTTTTTTAAATCATATCTATGTGCCTACTATTTGCTGGGAAATGAGCAATACTTTATCCTTTTGCAGCATCCCTAAATACTCACATTTTGATTACATCTGTTGTTAGTTCTATAGTTCTTACCGGCCTAGCTGGTTGTGATATTGCTTGGACGGTGTTGTGGAGTTTGGTTGTCAACTCTCAATTCATCTGAAGTCAATGATTGTGGTTTGACAGGCTTGGGGAAGTTCTTATTTCCTTGTCACTATTGTGGAGACATGTTCAATCATAATTTTTGGTTGAATAAATGCTCCTTTTGGGTTTTTGATATTTGACCTGTAGTCTCTAGTGTTGATAATCTTCTAAGGATATTAGAGTCCACAGGCTTGAAGGGCTTCCAATCATTCTTCTGGGTAGAAAGAGTTGAAGCATCTTGGAAAGGATGACTATCTCTTACCATATGTGCACTTCAACAAAAGTATCGGAGTCTTCAAAAGAGCAAACAGAATAGCCTGTCTCAAATTGAGGTTTTTTATCTTTTTTTTTTTTTCTATAATTTTTTTTAGGAAATTTCAAAGGGATAGCCTCAGGCAATGA

mRNA sequence

ATGGCGTCGGCTAATTTCTGGCCCTCGAAATGCCTTCATCTGCAACAAAGGCTAGATCATGAAAGCGCCATTCCAACAGCTTCATATTCGAATATAGAAACCCTTGTTATTGGTCATTTTCATGTCGTCATCACGATCTGGATCTATCTCAAAGAGTTGAAGCATCTTGGAAAGGATGACTATCTCTTACCATATGTGCACTTCAACAAAAGTATCGGAGTCTTCAAAAGAGCAAACAGAATAGCCTGTCTCAAATTGAGGAAATTTCAAAGGGATAGCCTCAGGCAATGA

Coding sequence (CDS)

ATGGCGTCGGCTAATTTCTGGCCCTCGAAATGCCTTCATCTGCAACAAAGGCTAGATCATGAAAGCGCCATTCCAACAGCTTCATATTCGAATATAGAAACCCTTGTTATTGGTCATTTTCATGTCGTCATCACGATCTGGATCTATCTCAAAGAGTTGAAGCATCTTGGAAAGGATGACTATCTCTTACCATATGTGCACTTCAACAAAAGTATCGGAGTCTTCAAAAGAGCAAACAGAATAGCCTGTCTCAAATTGAGGAAATTTCAAAGGGATAGCCTCAGGCAATGA

Protein sequence

MASANFWPSKCLHLQQRLDHESAIPTASYSNIETLVIGHFHVVITIWIYLKELKHLGKDDYLLPYVHFNKSIGVFKRANRIACLKLRKFQRDSLRQ
Homology
[Close]
BLAST of CcUC10G187000 vs. NCBI nr
Match: XP_022923203.1 (uncharacterized protein LOC111430970 isoform X1 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 14 LQQRLDHESAIPTASYSNIETLVIGHFHVVITIWIYLKELKHLGKDD 61
          LQ  L+HESAI TASY  IET+ IGHFHV +TIW+YL     L + D
Sbjct: 33 LQHTLNHESAISTASYLIIETVAIGHFHVAVTIWLYLNLGLFLSRKD 79

[Close]
BLAST of CcUC10G187000 vs. NCBI nr
Match: KAG7015793.1 (hypothetical protein SDJN02_23431 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 14 LQQRLDHESAIPTASYSNIETLVIGHFHVVITIWIYL 51
          LQ  L+HESAI TASY  IET+ IGHFHV +TIW+YL
Sbjct: 33 LQHTLNHESAISTASYLIIETVAIGHFHVAVTIWLYL 69

[Close]
BLAST of CcUC10G187000 vs. NCBI nr
Match: XP_022923204.1 (uncharacterized protein LOC111430970 isoform X2 [Cucurbita moschata])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 14 LQQRLDHESAIPTASYSNIETLVIGHFHVVITIWIYL 51
          LQ  L+HESAI TASY  IET+ IGHFHV +TIW+YL
Sbjct: 33 LQHTLNHESAISTASYLIIETVAIGHFHVAVTIWLYL 69

[Close]
BLAST of CcUC10G187000 vs. NCBI nr
Match: KAG6577755.1 (Protein CYCLOPS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 14 LQQRLDHESAIPTASYSNIETLVIGHFHVVITIWIYL 51
          LQ  L+HESAI TASY  IET+ IGHFHV +TIW+YL
Sbjct: 33 LQHTLNHESAISTASYLIIETVAIGHFHVAVTIWLYL 69

[Close]
BLAST of CcUC10G187000 vs. ExPASy TrEMBL
Match: A0A6J1E8X0 (uncharacterized protein LOC111430970 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430970 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 14 LQQRLDHESAIPTASYSNIETLVIGHFHVVITIWIYLKELKHLGKDD 61
          LQ  L+HESAI TASY  IET+ IGHFHV +TIW+YL     L + D
Sbjct: 33 LQHTLNHESAISTASYLIIETVAIGHFHVAVTIWLYLNLGLFLSRKD 79

[Close]
BLAST of CcUC10G187000 vs. ExPASy TrEMBL
Match: A0A6J1E5Q6 (uncharacterized protein LOC111430970 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430970 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 14 LQQRLDHESAIPTASYSNIETLVIGHFHVVITIWIYL 51
          LQ  L+HESAI TASY  IET+ IGHFHV +TIW+YL
Sbjct: 33 LQHTLNHESAISTASYLIIETVAIGHFHVAVTIWLYL 69

The following BLAST results are available for this feature:
BLAST of CcUC10G187000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923203.13.6e-0559.57uncharacterized protein LOC111430970 isoform X1 [Cucurbita moschata][more]
KAG7015793.11.0e-0470.27hypothetical protein SDJN02_23431 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022923204.11.0e-0470.27uncharacterized protein LOC111430970 isoform X2 [Cucurbita moschata][more]
KAG6577755.11.0e-0470.27Protein CYCLOPS, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CcUC10G187000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC10G187000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E8X01.7e-0559.57uncharacterized protein LOC111430970 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1E5Q65.0e-0570.27uncharacterized protein LOC111430970 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CcUC10G187000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G187000.1CcUC10G187000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036377 arbuscular mycorrhizal association
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding