CcUC10G186340 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G186340
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 449304 .. 452617 (-)
RNA-Seq Expression	CcUC10G186340
Synteny	CcUC10G186340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGTAACGAAACAGGATTCTTTTAGGGCTCGAATCACAGCGTAGAGATGGAGATCTTGATTCATCAGATGAGTCGATCCGATTTTCTCGTTCATTTGTTTAGTTGATGAGATCAATTTCAGTGCCTCCTTCTTCGTCTTCTTTCTGAGGTGAGTGTAATTAGCGATGGCGTTTCTGATGCTTGAATCTCCCTTCCTTCTACGAAGAGCGGATTGCAGAGCTTGAGCTTGTTCCTGTATTTGCAATATCATGTCTCTTGTCTTCCCGCAGGTGTCTAAAAGCTTCATGAATCCATCGACCAATTCGTCCACCCATTTCCGGTTCTGGTGTCTCGATAAGAGCTGTTTAGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCTCAACAGGCCATTGCAGATTGACTTGGAGGTTGAAGGAAATGAGTTCTCCAATGGCTTCAACTTGCTCAGTTGCTCTTCGATTCTGAGAGTGGTGGGATGGGATCTGGAAGGTAAGCTGATTGATCGTAACTGGTAACGAGCAGCCATTGTTGGTTGCTTTAGAAAGCTTAATTTTGAGAAATCTGCTGAGTTTGATGATGTTAAACTCTTTGAATCGGTTTATATATGGCCACATTGCATGGAAGATGAGAAAGAGGAGACAGCGAGCGTTGGTTTCAATGAGTGAAGCTTGGCAGCGGAGAAATGGCCGGCGGGAGTGTCCTTTTTTTGCCCAAAAAACTGAGAAAGGTCAGCTCATAACTTGCTTTAAATTGTCTCCTTGTTTGGAATATAAAATTGAGGCTGCACAAATCTCACGTTTGGAGTGCAAATGCAATGCATATACTGAAGCTTTTTTTAATATTAAAATGAAATTTAATGTTAAATTTTGTTTGCTTGCTCTTCAATCTTGTCGCAATCTGAAAGGTGGGGCAAAGGATTATTGACACCCATGTTTCATATAACCATGACAAGTGCCTGATAGATTCTGATTAGAAATGGCATGTGGAGTAGTAGGGTGGAAGGGGTAATATTTTGGGAGTGTCTTTGAAGGTTTTCGGAGGAAAATTACTTTTGGAATTTCTTTTTTATTAAATTCTAATTCATTTTTGCCCTTGCAAAATCACTAGGATGTGATAGAATTTGAAGTCTTAAATGACTTTTTATATTCTCATTGAGATTGAGTTAGCTGCTTTAGATTTCCTTCTAGGGTTCAAGTGTTTAACAGTATTTTTTCTTCCTCTCCGTATATACAAAAGTTTAAATCTTATTTTCGTCAAATCTTTGTGTTTTTTGGTTCCAACTTTTCAACAATCTATCTATTTTAGTCTTTTGTTCATATATTTAATGAGTATGATCAGTTGGACCAATATTTAAATCCACATATAATTTGTAAATGGATCTAGATTATAATTATTAGCAAGCTAGGATTAAAACAATTGTTTATGCTAAGCTTAAAGAGCACATGAAATACTTACAAGTTTGGAGAACAAAATATAATATTTCAAAGTTTGGAGGTTAAAACAAAATAAATATAAAAATTCATGGCTGAAATAAGATTTAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAATTTAAAAAATTGGAGGAAAAAAAAAAAAAAAAACTTTCGAGTGTTGATTGGAATTTTCAAGAGTTATCTCTCTCGATATGAAATGAAAATTTTGAATAAAAGTTATTTTTTAGTAGAAAAAACATTATGAGGAATAGAAATTAGGGGGAAAACTCGAAAAAATATTTAGATCATTTAAACACTCACGTGAACATGCCATACTCTCATTTCCCACATTGCAGATACAAGCAGGAGGCAAGGGTGCTGCTTAATTTCTTTGGATCAAATTGCACGAAAAAAGATGGAAGGAAAGAATCTTGGAGGCAAAAAGAGACAGAAACAGTATATTAAAAAGGAGTTTCACGTACATTGCAGAACATTGAACTTGTTCATCGAAAACAAATGGATAGAGGAAGAAGACAAGGCCTTCAAGGATCTATCATGTGACCGTACAGTTCAAAAGGTACGCATTATATTACAGAAACAACTAATAAGGCTTCTTTAAACTGAATTTATATTCAAATCTTCATAATACCCTTTATTCTTTTATTACAAAAATGAGTCTAAGGCTTAGTACATCTAAATATTTTCCACAATCCAAAAATTGGCTACAAAAGCAAAGTTTTCTGGTCCCAAACTTAATGAATTCATACAAAACTAGGAGCTAAACATCTACTTATAGTTTTCTCTGCAGAAACATAAATGTGATCTATACATGAAATGCCTCAATAGAAGTTGTAGGTTTGCCCTTTCTATTGCCAAAATAAGCCTACAATATTAACTATTTTTTGTTTGTCTTTTTTAGATTAGGGGAAAAAAACCATAGTTTTGTTGAGCAAATGAAAGGATATACAATGGGCATGAAGGGAAAAAAAAGGTTGAGCCATACCAAAAAAGAAAACGCTTCAATTGTCAAGAATAAGAAACAAAAGATAATTATATAATGTGCTTACGATATGTTTGGGCGTAATTTATAATGATTAGAATCACTCTTATCATTTTCAAAATTACTCGAATGTGGTTTTAATTATTGAAACCAAATTTAATAGTATGAAAAATGTGTTTAAAAATGTAAAATTGAACCTTTCATTGTTTTTTACTGATTAAAGATGTATTTCATAATAATTTTAACTATTTTAAAATCACATCCAAATATTAACTCAGACTCTCACCCTAATTCTTGGAGATGGAGCCATTTTGTTTCTCTTTTTAAGTGTTGGAGGCCTCTTAGTCCTGCACATGTTCTATTAGGTGATATATTATTTCATAATCCATAGTATTCATAAACATTATTGCGAATAATGAACTGAGATGGTACGTTCCTATTAGCAAGAAGCTTTTCCGAGGAAAAGTGAGACAAGAATTAGCAAACAATTATAGA

mRNA sequence

ATGGAAATGTGCCTCCTTCTTCGTCTTCTTTCTGAGGTGTCTAAAAGCTTCATGAATCCATCGACCAATTCGTCCACCCATTTCCGGTTCTGGTGTCTCGATAAGAGCTGTTTAGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCTCAACAGGCCATTGCAGATTGACTTGGAGGTTGAAGGAAATGAGTTCTCCAATGGCTTCAACTTGCTCAGTTGCTCTTCGATTCTGAGAGTGGTGGGATGGGATCTGGAAGATACAAGCAGGAGGCAAGGGTGCTGCTTAATTTCTTTGGATCAAATTGCACGAAAAAAGATGGAAGGAAAGAATCTTGGAGGCAAAAAGAGACAGAAACAGTATATTAAAAAGGAGTTTCACGTACATTGCAGAACATTGAACTTGTTCATCGAAAACAAATGGATAGAGGAAGAAGACAAGGCCTTCAAGGATCTATCATGTGACCGTACAGTTCAAAAGTGTTGGAGGCCTCTTAGTCCTGCACATGTTCTATTAGTATTCATAAACATTATTGCGAATAATGAACTGAGATGGTACGTTCCTATTAGCAAGAAGCTTTTCCGAGGAAAAGTGAGACAAGAATTAGCAAACAATTATAGA

Coding sequence (CDS)

ATGGAAATGTGCCTCCTTCTTCGTCTTCTTTCTGAGGTGTCTAAAAGCTTCATGAATCCATCGACCAATTCGTCCACCCATTTCCGGTTCTGGTGTCTCGATAAGAGCTGTTTAGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCTCAACAGGCCATTGCAGATTGACTTGGAGGTTGAAGGAAATGAGTTCTCCAATGGCTTCAACTTGCTCAGTTGCTCTTCGATTCTGAGAGTGGTGGGATGGGATCTGGAAGATACAAGCAGGAGGCAAGGGTGCTGCTTAATTTCTTTGGATCAAATTGCACGAAAAAAGATGGAAGGAAAGAATCTTGGAGGCAAAAAGAGACAGAAACAGTATATTAAAAAGGAGTTTCACGTACATTGCAGAACATTGAACTTGTTCATCGAAAACAAATGGATAGAGGAAGAAGACAAGGCCTTCAAGGATCTATCATGTGACCGTACAGTTCAAAAGTGTTGGAGGCCTCTTAGTCCTGCACATGTTCTATTAGTATTCATAAACATTATTGCGAATAATGAACTGAGATGGTACGTTCCTATTAGCAAGAAGCTTTTCCGAGGAAAAGTGAGACAAGAATTAGCAAACAATTATAGA

Protein sequence

MEMCLLLRLLSEVSKSFMNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAYKSSSLNRPLQIDLEVEGNEFSNGFNLLSCSSILRVVGWDLEDTSRRQGCCLISLDQIARKKMEGKNLGGKKRQKQYIKKEFHVHCRTLNLFIENKWIEEEDKAFKDLSCDRTVQKCWRPLSPAHVLLVFINIIANNELRWYVPISKKLFRGKVRQELANNYR

Homology

[Close]

BLAST of CcUC10G186340 vs. NCBI nr
Match: XP_038903246.1 (uncharacterized protein LOC120089891 isoform X1 [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 9.6e-51
Identity = 116/182 (63.74%), Postives = 129/182 (70.88%), Query Frame = 0


Query: 18  MNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAYKSSSLNRPLQIDLEVEGNEFSNGFNL 77
           MNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAY+SSS NRPLQIDLEVEG+EFSNGFNL
Sbjct: 1   MNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAYRSSSPNRPLQIDLEVEGDEFSNGFNL 60

Query: 78  LSCSSILRVVGWDLED--------------------TSRRQGCCL-ISLDQIAR------ 137
           LSCSSILRVVGWDLE                      SRR+  CL   L + AR      
Sbjct: 61  LSCSSILRVVGWDLEGKLRGRRHQALVSMNAGWQRRNSRRECPCLPKKLRKEARVLLNFF 120

Query: 138 ----KKMEGKNLGGKKR--QKQYIKKEFHVHCRTLNLFIENKWIEEEDKAFKDLSCDRTV 167
                K +G+    ++R  + + +K+  HVHCRTLNL+IENKWIEEEDKAFKD SCDRTV
Sbjct: 121 GSNCTKKDGRRESWRQRRDRNRILKRGGHVHCRTLNLYIENKWIEEEDKAFKDPSCDRTV 180

[Close]

BLAST of CcUC10G186340 vs. NCBI nr
Match: XP_038903247.1 (uncharacterized protein LOC120089891 isoform X2 [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 9.6e-51
Identity = 116/182 (63.74%), Postives = 129/182 (70.88%), Query Frame = 0


Query: 18  MNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAYKSSSLNRPLQIDLEVEGNEFSNGFNL 77
           MNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAY+SSS NRPLQIDLEVEG+EFSNGFNL
Sbjct: 1   MNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAYRSSSPNRPLQIDLEVEGDEFSNGFNL 60

Query: 78  LSCSSILRVVGWDLED--------------------TSRRQGCCL-ISLDQIAR------ 137
           LSCSSILRVVGWDLE                      SRR+  CL   L + AR      
Sbjct: 61  LSCSSILRVVGWDLEGKLRGRRHQALVSMNAGWQRRNSRRECPCLPKKLRKEARVLLNFF 120

Query: 138 ----KKMEGKNLGGKKR--QKQYIKKEFHVHCRTLNLFIENKWIEEEDKAFKDLSCDRTV 167
                K +G+    ++R  + + +K+  HVHCRTLNL+IENKWIEEEDKAFKD SCDRTV
Sbjct: 121 GSNCTKKDGRRESWRQRRDRNRILKRGGHVHCRTLNLYIENKWIEEEDKAFKDPSCDRTV 180

[Close]

BLAST of CcUC10G186340 vs. ExPASy TrEMBL
Match: A0A0A0L1K1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002440 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.2e-35
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 10  LSEVSKSFMNPSTNSSTHFRFWCLDKSCLVDAIWRSSSMEAYKSSSLNRPLQIDLEVEGN 69
           L  VSKSFMNPST+SSTHFRFWCLDK+CLVDAIWRSSSMEAYKSSS N+PLQIDLEVEG+
Sbjct: 51  LELVSKSFMNPSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGD 110

Query: 70  EFSNGFNLLSCSSILRVVGWDLE 93
           EFSNGFNLLSCSSILRVVGWDLE
Sbjct: 111 EFSNGFNLLSCSSILRVVGWDLE 133

The following BLAST results are available for this feature:

BLAST of CcUC10G186340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903246.1	9.6e-51	63.74	uncharacterized protein LOC120089891 isoform X1 [Benincasa hispida]	[more]
XP_038903247.1	9.6e-51	63.74	uncharacterized protein LOC120089891 isoform X2 [Benincasa hispida]	[more]

BLAST of CcUC10G186340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G186340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1K1	1.2e-35	91.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002440 PE=4 SV=1	[more]

BLAST of CcUC10G186340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G186340.1	CcUC10G186340.1	mRNA