CcUC09G183910 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G183910
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr09: 35230596 .. 35232203 (-)
RNA-Seq Expression	CcUC09G183910
Synteny	CcUC09G183910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATGTGGGACCAATACATATGATATAGGATAGGATTTTGATTTCACATAATTAGAAGTTGCATTCTTAAGTTAATTGTTACATCGAGGGATAATAATTCATTCATGCTGATGATCATGATAGAACAACGTTTGTAAGGTGCAGAAGCCATGATTTACTATCGTACATGACAAACCAACATACAACGGGAAGCGGGAAACACCACTCTACAAAGATACATTATTACATTCCACTATTGATAGTAGTATTCGACCTATATACTTCTAGAGTTAATTGTGTGTCTTCGTCTGAAATGTAGAAACCACAGTTTAGAAGAAAGCTCTGCTTCCATAGAACACTCGTGCATTACCATTCGAGGATGGTGTTTTCTGATCGGAGCTTGAATTTCCTGAACTGGTTGGTTCATTATCAACATCGAGAGGAAGTTTCATCTTTGCTAATGACTCAGTAAATTGCTGCATGCTTTTCATATACATATCAACGATGTCCTGCTGCACTACATTTTGTTCTGGCTCTATGTTCACAGTGATAGCAGGCTTTGAGAATGAATCACTTGGTACCTCAACAGGGGAATCAGCCTTGCCATTCTTAACGTCCACGTGCTTCTCCTCTACAATCGGTTCTTGAGTTTGAGGTTTTGAAGCTTCTGAAGCATCAGATGATTCTGAGCTTGTTTGTGCAGGAGGCGAGGATGCTCCATTAGTTGACAAGCTGCTAGGTGGAGAATCGAGCTTTGAAAGCTGCACAGATTCGACAGAAGCTGTTGAGAAGCTTTCCACAATCTGCGCACCTACTTCTGAACTCAGATGATCTTCTGTACCAGAAGTGGCTAGGCTCTCGGAGTCCTCAGACTCCGGATTAGAGCCTGGGATACAGAAATACTCAGACACCATCATCTCATCTTCATTTACGATCTTAGGATCTGGAAACTCTATCTTATCCAAATCACTAGCTAATGACTCGGATATTTCAGAATCCTTCAATGCTGCATTTGATGATTCCAAGACAGCTTTAGGAACAGCCATCACATCAGGTGAGGTTCCATTGTATACAAGAGATAGTTGAACAAACCCAGCAGGAGAATGAAACAAATCAGTAGAAGAAAGAGAAAACTCTTTCTCTAATTTTCCATCGTTAACAAGAACTTCAGTCAATGGCACCAAGGTAAACCCCAACAACTGGTCTTCCAGATAATTCCTCACTCTGCTCAACATCCATATCTCACATTTAAGGGAGGCATCGACACTCTGAACATTGAAACGAAGATTCTCATTGAAGACCGGGTTCCTCCCAGCTCCATTAATGATTTTGGTGGAGAGAGAATCTTCAGGATCAGTAGTCAGACAAAGTTTAGCATAAACATCCTGCTTATGGTATATGCAGATATTATGAATGTCTCTAGCCTGATGAATGCATACATCAAGTGCACCAATAACTTCCTCCAAGTTATACATCACCGCTTCTTTTCGGTTGACCTCAATTCCCTTTGTTGGAGGACCAGAGATCGGAACAAAGAAATTGGGTTTCTGCTTCTCAGGCTCAGCAATGGCAGAGTTCTTCAATGGAGAAACAACAGATTGAGGGGAGTCCATGATAAGACTTAG

mRNA sequence

ATGTCAATAAGCCATGATTTACTATCGTACATGACAAACCAACATACAACGGGAAGCGGGAAACACCACTCTACAAAGATACATTATTACATTCCACTATTGATAGTAGTATTCGACCTATATACTTCTAGAGTGGAGAATCGAGCTTTGAAAGCTGCACAGATTCGACAGAAGCTGTTGAGAAGCTTTCCACAATCTGCGCACCTACTTCTGAACTCAGATGATCTTCTGTACCAGAAGCTCTCGGAGTCCTCAGACTCCGGATTAGAGCCTGGGATACAGAAATACTCAGACACCATCATCTCATCTTCATTTACGATCTTAGGATCTGGAAACTCTATCTTATCCAAATCACTAGCTAATGACTCGGATATTTCAGAATCCTTCAATGCTGCATTTGATGATTCCAAGACAGCTTTAGGAACAGCCATCACATCAGGTGAGAACTTCAGTCAATGGCACCAAGGTAAACCCCAACAACTGGTCTTCCAGATAATTCCTCACTCTGCTCAACATCCATATCTCACATTTAAGGGAGGCATCGACACTCTGAACATTGAAACGAAGATTCTCATTGAAGACCGGGTTCCTCCCAGCTCCATTAATGATTTTGGTGGAGAGAGAATCTTCAGGATCAGTAGTCAGACAAAGTTTAGCATAAACATCCTGCTTATGGTATATGCAGATATTATGAATGTCTCTAGCCTGATGAATGCATACATCAAGTGCACCAATAACTTCCTCCAAGTTATACATCACCGCTTCTTTTCGGTTGACCTCAATTCCCTTTGTTGGAGGACCAGAGATCGGAACAAAGAAATTGGGTTTCTGCTTCTCAGGCTCAGCAATGGCAGAGTTCTTCAATGGAGAAACAACAGATTGAGGGGAGTCCATGATAAGACTTAG

Coding sequence (CDS)

ATGTCAATAAGCCATGATTTACTATCGTACATGACAAACCAACATACAACGGGAAGCGGGAAACACCACTCTACAAAGATACATTATTACATTCCACTATTGATAGTAGTATTCGACCTATATACTTCTAGAGTGGAGAATCGAGCTTTGAAAGCTGCACAGATTCGACAGAAGCTGTTGAGAAGCTTTCCACAATCTGCGCACCTACTTCTGAACTCAGATGATCTTCTGTACCAGAAGCTCTCGGAGTCCTCAGACTCCGGATTAGAGCCTGGGATACAGAAATACTCAGACACCATCATCTCATCTTCATTTACGATCTTAGGATCTGGAAACTCTATCTTATCCAAATCACTAGCTAATGACTCGGATATTTCAGAATCCTTCAATGCTGCATTTGATGATTCCAAGACAGCTTTAGGAACAGCCATCACATCAGGTGAGAACTTCAGTCAATGGCACCAAGGTAAACCCCAACAACTGGTCTTCCAGATAATTCCTCACTCTGCTCAACATCCATATCTCACATTTAAGGGAGGCATCGACACTCTGAACATTGAAACGAAGATTCTCATTGAAGACCGGGTTCCTCCCAGCTCCATTAATGATTTTGGTGGAGAGAGAATCTTCAGGATCAGTAGTCAGACAAAGTTTAGCATAAACATCCTGCTTATGGTATATGCAGATATTATGAATGTCTCTAGCCTGATGAATGCATACATCAAGTGCACCAATAACTTCCTCCAAGTTATACATCACCGCTTCTTTTCGGTTGACCTCAATTCCCTTTGTTGGAGGACCAGAGATCGGAACAAAGAAATTGGGTTTCTGCTTCTCAGGCTCAGCAATGGCAGAGTTCTTCAATGGAGAAACAACAGATTGAGGGGAGTCCATGATAAGACTTAG

Protein sequence

MSISHDLLSYMTNQHTTGSGKHHSTKIHYYIPLLIVVFDLYTSRVENRALKAAQIRQKLLRSFPQSAHLLLNSDDLLYQKLSESSDSGLEPGIQKYSDTIISSSFTILGSGNSILSKSLANDSDISESFNAAFDDSKTALGTAITSGENFSQWHQGKPQQLVFQIIPHSAQHPYLTFKGGIDTLNIETKILIEDRVPPSSINDFGGERIFRISSQTKFSINILLMVYADIMNVSSLMNAYIKCTNNFLQVIHHRFFSVDLNSLCWRTRDRNKEIGFLLLRLSNGRVLQWRNNRLRGVHDKT

Homology

[Close]

BLAST of CcUC09G183910 vs. NCBI nr
Match: GER32862.1 (hypothetical protein STAS_08954, partial [Striga asiatica])

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-06
Identity = 32/130 (24.62%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 173 PYLTFKGGIDTLNIETKILIEDRVPPSSINDFGGERIFRISSQTKFSINILLMVYADIMN 232
           PY   +GG+   + + + LIED V  ++++DFGG+ +F ++ + +  +++LL+V AD+++
Sbjct: 320 PYFALEGGVGGSDRKAEALIEDGVVTAAVDDFGGDGVFWVAREAELGVHVLLLVDADVVD 379

Query: 233 VSSLMNAYIKCTN--NFLQVIHHRFFSVDLNSLCWRTRDRNKEIGFLLLRLSNGRV-LQW 292
           V+ +++ +++       L ++    F+++++                 L + +GR+ L+W
Sbjct: 380 VAGMVDVHVEGRQLAVVLVLVGPNVFALEID-----------------LHILSGRMGLEW 432

Query: 293 RNNRLRGVHD 300
            ++RLRG+H+
Sbjct: 440 GHDRLRGIHE 432

[Close]

BLAST of CcUC09G183910 vs. ExPASy TrEMBL
Match: A0A5A7PJR9 (Uncharacterized protein (Fragment) OS=Striga asiatica OX=4170 GN=STAS_08954 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 32/130 (24.62%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 173 PYLTFKGGIDTLNIETKILIEDRVPPSSINDFGGERIFRISSQTKFSINILLMVYADIMN 232
           PY   +GG+   + + + LIED V  ++++DFGG+ +F ++ + +  +++LL+V AD+++
Sbjct: 320 PYFALEGGVGGSDRKAEALIEDGVVTAAVDDFGGDGVFWVAREAELGVHVLLLVDADVVD 379

Query: 233 VSSLMNAYIKCTN--NFLQVIHHRFFSVDLNSLCWRTRDRNKEIGFLLLRLSNGRV-LQW 292
           V+ +++ +++       L ++    F+++++                 L + +GR+ L+W
Sbjct: 380 VAGMVDVHVEGRQLAVVLVLVGPNVFALEID-----------------LHILSGRMGLEW 432

Query: 293 RNNRLRGVHD 300
            ++RLRG+H+
Sbjct: 440 GHDRLRGIHE 432

The following BLAST results are available for this feature:

BLAST of CcUC09G183910 vs. NCBI nr


Match Name	E-value	Identity	Description
GER32862.1	4.5e-06	24.62	hypothetical protein STAS_08954, partial [Striga asiatica]	[more]

BLAST of CcUC09G183910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G183910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7PJR9	2.2e-06	24.62	Uncharacterized protein (Fragment) OS=Striga asiatica OX=4170 GN=STAS_08954 PE=4...	[more]

BLAST of CcUC09G183910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G183910.1	CcUC09G183910.1	mRNA